FC920841

Overview
NameFC920841
Unique NameFC920841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: NTRK2_MOUSE (BDNF/NT-3 growth factors receptor OS=Mus musculus GN=Ntrk2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 74/247 (29.96%), Postives = 107/247 (43.32%), Query Frame = 3
Query:   33 KAPVFGNPPRWFTYAELELATNRFSE---------ANFLAEGGFVSVHRGVL------PDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRD-----------PLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGD-MGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            K PV  NP ++F     +L  + F +            L EG F  V            D  +VAVK  K AS    ++F  E E+L+  QH ++V   G CVE    ++V+EY+ +G L+  L     D            L  S    IA   A G+ YL  +      VHRD+   N LV  +    +GDFG++R     D   V    +    ++ PE     + T ++DV+SLGVVL E+ T
Sbjct:  506 KIPVIENP-QYFGITNSQLKPDTFVQHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ----HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFT 747          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: NTRK2_HUMAN (BDNF/NT-3 growth factors receptor OS=Homo sapiens GN=NTRK2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 74/247 (29.96%), Postives = 107/247 (43.32%), Query Frame = 3
Query:   33 KAPVFGNPPRWFTYAELELATNRFSE---------ANFLAEGGFVSVHRGVL------PDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRD-----------PLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGD-MGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            K PV  NP ++F     +L  + F +            L EG F  V            D  +VAVK  K AS    ++F  E E+L+  QH ++V   G CVE    ++V+EY+ +G L+  L     D            L  S    IA   A G+ YL  +      VHRD+   N LV  +    +GDFG++R     D   V    +    ++ PE     + T ++DV+SLGVVL E+ T
Sbjct:  507 KIPVIENP-QYFGITNSQLKPDTFVQHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ----HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFT 748          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: NTRK2_CHICK (BDNF/NT-3 growth factors receptor OS=Gallus gallus GN=NTRK2 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 74/247 (29.96%), Postives = 107/247 (43.32%), Query Frame = 3
Query:   33 KAPVFGNPPRWFTYAELELATNRFSE---------ANFLAEGGFVSVHRGVL------PDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRD-----------PLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGD-MGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            K PV  NP ++F     +L  + F +            L EG F  V            D  +VAVK  K AS    ++F  E E+L+  QH ++V   G CVE    ++V+EY+ +G L+  L     D            L  S    IA   A G+ YL  +      VHRD+   N LV  +    +GDFG++R     D   V    +    ++ PE     + T ++DV+SLGVVL E+ T
Sbjct:  503 KIPVIENP-QYFGITNSQLKPDTFVQHIKRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQ----HFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFT 744          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: NTRK1_CHICK (High affinity nerve growth factor receptor (Fragment) OS=Gallus gallus GN=NTRK1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 72/246 (29.27%), Postives = 107/246 (43.50%), Query Frame = 3
Query:    3 PPPLCSTCQHKAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQ--VVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHL-------------YGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGD-MGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            P   C+ C H         +W      EL    F +  FLAE   +      LP+ +  +VAVK  K  +     +F  E E+L+  QH ++V   G C E    ++V+EY+ +G L+  L              G+    L  S   +IA   A G+ YL         VHRD+   N LV HD    +GDFG++R     D   V  R +    ++ PE     + T ++D++S GVVL E+ T
Sbjct:  477 PQYFCNACVHHVQRRDIVLKW------ELGEGAFGKV-FLAECSHL------LPEQEKTLVAVKALKEVTENARLDFQREAELLTVLQHEHIVKFYGVCTEGDPLIMVFEYMKHGDLNRFLRSHGPDAKILDQGQGQPCGQLTLSHMLQIATQIASGMVYLASL----HFVHRDLATRNCLVGHDLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDIWSFGVVLWEIFT 705          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: LRRK2_HUMAN (Leucine-rich repeat serine/threonine-protein kinase 2 OS=Homo sapiens GN=LRRK2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 65/197 (32.99%), Postives = 109/197 (55.33%), Query Frame = 3
Query:  120 LAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFE-----PLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQI-TEKADVYSLGVVLVELIT 692
            L +G F SV+R    +G+ VAVK +   +S   +    E+ VL    H +++ L+   +    R+LV E    GSLD  L  +D+  L  + + +IA+  A GLRYLH       I++RD++P+N+L+   +        + D+G+A++     MG++T   GT G+ APE A+   I  ++ADVYS G++L +++T
Sbjct: 1885 LGDGSFGSVYRAAY-EGEEVAVKIFNKHTSL--RLLRQELVVLCHLHHPSLISLLAAGIRP--RMLVMELASKGSLD-RLLQQDKASLTRTLQHRIALHVADGLRYLHS----AMIIYRDLKPHNVLLFTLYPNAAIIAKIADYGIAQY--CCRMGIKTSE-GTPGFRAPEVARGNVIYNQQADVYSFGLLLYDILT 2068          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: LCK_AOTNA (Proto-oncogene tyrosine-protein kinase LCK OS=Aotus nancymaae GN=LCK PE=2 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 68/227 (29.96%), Postives = 98/227 (43.17%), Query Frame = 3
Query:   12 LCSTCQHKAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            L   CQ + P     P W    E+   T +  E   L  G F  V  G   D   VAVK  K  S   D  F +E  ++   QH+ +V L     ++   ++  EY+ NGSL   L       L  +    +A   A G+ ++ E       +HRD+R  NILV+      + DFGLAR   D +            + APE    G  T K+DV+S G++L E++T
Sbjct:  220 LSRPCQTQKP---QKPWWEDEWEVPRETLKLVER--LGAGQFGEVWMGYYNDHTKVAVKSLKQGSMSPDA-FLAEANLMKQLQHQRLVRLYAVVTQEPIYIIT-EYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERN----YIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVT 435          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: ITK_MOUSE (Tyrosine-protein kinase ITK/TSK OS=Mus musculus GN=Itk PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15
Identity = 60/228 (26.32%), Postives = 102/228 (44.74%), Query Frame = 3
Query:    9 PLCSTCQHKAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            P+CS  Q KAPV         Y +  +  +  +    +  G F  VH G   +   VA+K  +   +  +++F  E EV+    H  +V L G C+E     LV+E++ +G L  +L  + R          + +    G+ YL +     C++HRD+   N LV  +    V DFG+ R+  D      T       + +PE     + + K+DV+S GV++ E+ +
Sbjct:  342 PVCSWRQ-KAPVTAG----LRYGKWVIQPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIQ-EGAMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRSQ-RGLFAAETLLGMCLDVCEGMAYLEK----ACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFS 558          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: Y4251_DICDI (Probable serine/threonine-protein kinase DDB_G0284251 OS=Dictyostelium discoideum GN=DDB_G0284251 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 60/197 (30.46%), Postives = 100/197 (50.76%), Query Frame = 3
Query:  120 LAEGGFVSVHRGVL-PDGQVVAVKQYKLASSQGD----QEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITG 695
            +  G F  V +G+    G+ VA+KQ  + S++ D    Q    EVE+L   +H N+V ++G      +   + EY+ NGSL   +      PL             +GL YLH       ++HRD++ +NIL+T +    + DFG+A  Q D +  +   V+GT  ++APE  +    +  +D++SLG  ++EL+TG
Sbjct:   42 IGRGAFGQVFKGLNGKTGEFVAIKQ--IDSNKIDESSLQSVKGEVEILHKLRHNNIVKVLGVVEVQAQLNFILEYVENGSLRDVI--EKFGPLSEELCIIYLYQMLQGLAYLHSNK----VIHRDIKASNILITKEGVIKLADFGVAS-QIDSESQLRFSVVGTPYWMAPESIEISGCSSASDIWSLGSTMIELLTG 229          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: PKN2_CLOAB (Probable serine/threonine-protein kinase CA_C1728 OS=Clostridium acetobutylicum GN=CA_C1728 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14
Identity = 56/206 (27.18%), Postives = 103/206 (50.00%), Query Frame = 3
Query:   93 TNRFSEANFLAEGGFVSVHRGV-LPDGQVVAVKQYKLASSQGDQ---EFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            +NR+     +  GG   V++ +     + VAVK  K   ++ ++   +F  E    +   + N+V +     +     +V EY+   +L   +  ++   +E++     A   A+ L + H+      IVHRD++P+NI+VT D    V DFG+A+   +  +    +V+G+  YL+PE AQ   +  + D+YS G+VL E+ TG+
Sbjct:    7 SNRYKIEEEIGVGGTAVVYKAMDTLLNRHVAVKVLKHEFTEDEEFVFKFKREASAAARIANANIVNIYDVGADGNVNYIVMEYVAGKTLKKLI--KENGKIEFNKIIDYATQIAKALNFAHKNG----IVHRDIKPHNIMVTDDDIIKVTDFGIAKASNESTITTTNKVVGSAHYLSPEQAQGIPVDCRTDIYSFGIVLYEMATGK 206          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: PKNL_MYCTU (Probable serine/threonine-protein kinase pknL OS=Mycobacterium tuberculosis GN=pknL PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.631e-14
Identity = 68/212 (32.08%), Postives = 109/212 (51.42%), Query Frame = 3
Query:   78 ELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQ--GDQEFCSE--VEVLSCAQHRNVVMLIGFCV-EDGRR-LLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITG 695
            E  L  +R+     +A GG  +V+RG+  D ++      K+  S+  GD++F +   +E  + A+  N  ++  +   +DGR   LV E I  G+L   L   +R P+   A   +      GL   H   R G +VHRD++P NIL++ D +  + DFGL R      +     +LGT  YL+PE  + G    ++DVYS+GV++ EL+TG
Sbjct:   11 ESALLDSRYLVQAKIASGGTSTVYRGL--DVRLDRPVALKVMDSRYAGDEQFLTRFRLEARAVARLNNRALVAVYDQGKDGRHPFLVMELIEGGTLRELLI--ERGPMPPHAVVAVLRPVLGGLAAAH---RAG-LVHRDVKPENILISDDGDVKLADFGLVRAVAAASITSTGVILGTAAYLSPEQVRDGNADPRSDVYSVGVLVYELLTG 214          
The following BLAST results are available for this feature:
BLAST of FC920841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NTRK2_MOUSE9.561e-1529.96BDNF/NT-3 growth factors receptor OS=Mus musculus ... [more]
NTRK2_HUMAN9.561e-1529.96BDNF/NT-3 growth factors receptor OS=Homo sapiens ... [more]
NTRK2_CHICK9.561e-1529.96BDNF/NT-3 growth factors receptor OS=Gallus gallus... [more]
NTRK1_CHICK9.561e-1529.27High affinity nerve growth factor receptor (Fragme... [more]
LRRK2_HUMAN9.561e-1532.99Leucine-rich repeat serine/threonine-protein kinas... [more]
LCK_AOTNA9.561e-1529.96Proto-oncogene tyrosine-protein kinase LCK OS=Aotu... [more]
ITK_MOUSE9.561e-1526.32Tyrosine-protein kinase ITK/TSK OS=Mus musculus GN... [more]
Y4251_DICDI1.249e-1430.46Probable serine/threonine-protein kinase DDB_G0284... [more]
PKN2_CLOAB1.249e-1427.18Probable serine/threonine-protein kinase CA_C1728 ... [more]
PKNL_MYCTU1.631e-1432.08Probable serine/threonine-protein kinase pknL OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC32013F10EF RVDevelop1 Citrus clementina cDNA clone C32013F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920841 ID=FC920841; Name=FC920841; organism=Citrus clementina; type=EST; length=698bp
GTCCTCCTCCATTGTGTTCAACATGTCAGCACAAGGCACCTGTATTTGGT
AATCCTCCGAGGTGGTTCACCTATGCTGAATTGGAGCTTGCTACAAATAG
ATTTTCAGAAGCAAATTTCTTAGCCGAAGGTGGATTTGTGTCTGTTCACC
GAGGTGTTCTACCAGATGGCCAGGTTGTTGCCGTCAAGCAATATAAATTG
GCTAGTTCTCAAGGTGATCAAGAATTTTGCTCAGAAGTTGAGGTTTTAAG
TTGTGCACAACATCGCAATGTTGTGATGTTGATTGGATTCTGTGTGGAGG
ATGGGAGGAGATTGCTGGTTTATGAGTATATTTGCAATGGGTCCTTGGAT
TCCCATCTTTATGGACGTGATCGAGATCCACTGGAATGGTCTGCAAGGCG
AAAAATTGCGGTTGGAGCAGCTCGAGGGTTGCGATACCTTCATGAAGAAT
GTAGAGTGGGTTGTATCGTCCACCGTGATATGCGCCCTAACAACATTCTG
GTCACCCATGATTTTGAGCCACTGGTTGGGGATTTTGGACTAGCAAGATG
GCAACCAGATGGAGATATGGGAGTGGAAACAAGAGTACTCGGAACATTTG
GGTATTTAGCTCCAGAATATGCTCAGAGTGGTCAAATCACAGAAAAAGCT
GACGTCTATTCCCTTGGGGTAGTATTGGTGGAGCTCATTACNGGAAGG
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