FC920841

Overview
NameFC920841
Unique NameFC920841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: FGFR1_PLEWA (Fibroblast growth factor receptor 1 OS=Pleurodeles waltlii GN=FGFR1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 76/259 (29.34%), Postives = 116/259 (44.79%), Query Frame = 3
Query:    6 PPLCSTCQHKAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFVSVHRGVL-------PDGQV-VAVKQYKLASSQGD-QEFCSEVEVLSC-AQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGR--------------DRDPLEWSARRKIAVGAARGLRYL-HEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFG-----YLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            P L    +++ P     PRW      E + +R      L EG F  V  G         P+    VAVK  K  +++ D  +  SE+E++    +H+N++ L+G C +DG   ++ EY   G+L  +L  R               +D L +      A   ARG+ YL  ++C     +HRD+   N+LVT D    + DFGLAR     D   +T    T G     ++APE       T ++DV+S GV+L E+ T
Sbjct:  451 PMLTGVSEYELP---EDPRW------EFSRDRLILGKPLGEGCFGQVVMGEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPIHVSKDMLSFKDLVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTEDSVMKIADFGLARDIHHIDYYKKT----TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 691          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: FER_HUMAN (Proto-oncogene tyrosine-protein kinase Fer OS=Homo sapiens GN=FER PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14
Identity = 58/189 (30.69%), Postives = 91/189 (48.15%), Query Frame = 3
Query:  120 LAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQ-EFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVE 683
            L +G F  V++G L D   VAVK  K    Q  + +F  E ++L    H N+V LIG C +     ++ E +  G   + L  R +D L+     K ++ AA G+ YL  +    CI HRD+   N LV  +    + DFG++R +  G             + APE    G+ + ++DV+S G++L E
Sbjct:  569 LGKGNFGEVYKGTLKDKTSVAVKTCKEDLPQELKIKFLQEAKILKQYDHPNIVKLIGVCTQRQPVYIIMELVSGGDFLTFL-RRKKDELKLKQLVKFSLDAAAGMLYLESK---NCI-HRDLAARNCLVGENNVLKISDFGMSRQEDGGVYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSFGILLWE 752          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: SRK1_SPOLA (Tyrosine-protein kinase isoform SRK1 OS=Spongilla lacustris GN=SRK1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 63/205 (30.73%), Postives = 91/205 (44.39%), Query Frame = 3
Query:   78 ELELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            E E+   +      L  G F  V  G+      VAVK  K   +   +EF  E  ++   +H  ++ L   C ++    +V E +  GSL  +L G D   L+      +A   A G+ YL ++      +HRD+   NILV       V DFGLAR   +      T       + APE A   + T K+DV+S GVVL E+IT
Sbjct:  232 EWEIEKTQIKLLRRLGAGQFGEVWEGLWNGTTSVAVKTLK-PGTMSVEEFLQEASIMKRLRHPKLIQLYAVCTKEEPIYIVTELMKYGSLLEYLRGED-GVLKIEQLVDVAAQVASGMSYLEQQN----YIHRDLAARNILVGEHGICKVADFGLARVIDEEIYEAHTGAKFPIKWTAPEAAMYNRFTIKSDVWSFGVVLYEIIT 430          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: ROCO9_DICDI (Probable serine/threonine-protein kinase roco9 OS=Dictyostelium discoideum GN=roco9 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 63/204 (30.88%), Postives = 104/204 (50.98%), Query Frame = 3
Query:  108 EANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGD-----QEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHD----FEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            + N + EGG  +V++G      V A+K  K      D      E+  E+  LS   H N++ L GFC+E     ++ E+   G+L  +++   ++PL+W  R KIA G A  L+ LH+      +VHRD++  NIL++       E  + DF L+ +       V  R +    +LAPE   +   ++K+DVY+ GV+L EL++
Sbjct: 3010 DPNPIGEGGTATVYKGKWRQSDV-AIKLLKTDVVGSDFSKVFAEYRREIFCLSSFIHDNILDLKGFCLEP--LAIITEFQSGGNLYDYIHDL-KNPLDWQLRIKIAKGIAASLQTLHDSRP--SVVHRDLKSPNILLSSKDSLTMECHLCDFSLSGFSTT----VANRSVQNPVWLAPEVINNELCSDKSDVYAYGVILFELLS 3203          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: ROC11_DICDI (Probable serine/threonine-protein kinase roco11 OS=Dictyostelium discoideum GN=roco11 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 66/204 (32.35%), Postives = 103/204 (50.49%), Query Frame = 3
Query:  129 GGFVSVHRG--VLPDGQ-VVAVKQYKLASSQGD------QEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILV--THDFEPL---VGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQ-ITEKADVYSLGVVLVELITG 695
            GGF  VH+G  +L D   VVA+K Y + +S         QEF  E+ ++S   H N+V L G      R  +V E+  +G L   L    +  ++WS + ++ +  A+G+ YL  +     IVHRD+R  NI +    +  P+   V DFGL++       G+    LG F ++APE   + +  TEK D YS  ++L  ++TG
Sbjct: 1194 GGFGLVHKGKLILQDKSLVVAIKSYIVGNSSASDIIRKFQEFHHEMYIMSSLNHLNIVKLFGSMQNPPR--MVMEFAPHGDLYHFL--EKKKNIKWSFKVRLMLDIAKGIEYLQNQNPP--IVHRDLRSPNIFLFSLDENAPVCAKVADFGLSQQSLYSVSGL----LGNFQWMAPETIGAEESYTEKIDTYSFSMILFTILTG 1387          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: RMIL_AVII1 (Serine/threonine-protein kinase-transforming protein Rmil OS=Avian retrovirus IC10 GN=V-RMIL PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 59/212 (27.83%), Postives = 99/212 (46.70%), Query Frame = 3
Query:   84 ELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLA----RWQPDGDMGVETRVLGTFGYLAPEYAQ---SGQITEKADVYSLGVVLVELITGR 698
            E+   + +    +  G F +V++G       V +      + Q  Q F +EV VL   +H N+++ +G+  +   +L +    C GS   H         E      IA   A+G+ YLH +     I+HRD++ NNI +  D    +GDFGLA    RW          ++ G+  ++APE  +       + ++DVY+ G+VL EL+TG+
Sbjct:   61 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP--QLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF---EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 263          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: RMIL_AVEVR (Serine/threonine-protein kinase-transforming protein Rmil OS=Avian rous-associated virus type 1 GN=V-RMIL PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 59/212 (27.83%), Postives = 99/212 (46.70%), Query Frame = 3
Query:   84 ELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLA----RWQPDGDMGVETRVLGTFGYLAPEYAQ---SGQITEKADVYSLGVVLVELITGR 698
            E+   + +    +  G F +V++G       V +      + Q  Q F +EV VL   +H N+++ +G+  +   +L +    C GS   H         E      IA   A+G+ YLH +     I+HRD++ NNI +  D    +GDFGLA    RW          ++ G+  ++APE  +       + ++DVY+ G+VL EL+TG+
Sbjct:   77 EIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTKP--QLAIVTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKS----IIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQF---EQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQ 279          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: PKNK_MYCTU (Probable serine/threonine-protein kinase pknK OS=Mycobacterium tuberculosis GN=pknK PE=3 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 72/210 (34.29%), Postives = 97/210 (46.19%), Query Frame = 3
Query:   84 ELATNRFSEANFLAEGGFVSVHRGVLPD-GQVVAVKQYKLASSQGDQE-FCSEVEV---LSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVL-GTFGYLAPEYAQSGQITEKADVYSLGVVLVELITG 695
            EL    F     +  GGF  V+R V P   + VAVK       + + E F  E      LS   H   V+ +G  +  GR  +V  Y    SL++ +  R   PL+W     I V  A  L   H   RVG + HRD++P NIL+T   EP + DFG+AR    G     T V+ G+  + APE  +    T  +DVYSLG  L   +TG
Sbjct:   20 ELLEAGFDNVEEIGRGGFGVVYRCVQPSLDRAVAVKVLSTDLDRDNLERFLREQRAMGRLSGHPHIVTVLQVGV-LAGGRPFIVMPYHAKNSLETLI--RRHGPLDWRETLSIGVKLAGALEAAH---RVGTL-HRDVKPGNILLTDYGEPQLTDFGIARIA--GGFETATGVIAGSPAFTAPEVLEGASPTPASDVYSLGATLFCALTG 220          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: M3K12_RAT (Mitogen-activated protein kinase kinase kinase 12 OS=Rattus norvegicus GN=Map3k12 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 54/180 (30.00%), Postives = 92/180 (51.11%), Query Frame = 3
Query:  168 GQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLY-GRDRDP---LEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITG 695
            G+ VAVK+ +           ++++ L   +H N++   G C +     ++ E+   G L   L  GR   P   ++WS      +G A G+ YLH    +  I+HRD++  N+L+T+D    + DFG ++     D   +    GT  ++APE  ++  ++EK D++S GVVL EL+TG
Sbjct:  179 GEEVAVKKVRDLKE-------TDIKHLRKLKHPNIITFKGVCTQAPCYCILMEFCAQGQLYEVLRAGRPVTPSLLVDWS------MGIAGGMNYLH----LHKIIHRDLKSPNMLITYDDVVKISDFGTSKEL--SDKSTKMSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTG 339          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: M3K12_MOUSE (Mitogen-activated protein kinase kinase kinase 12 OS=Mus musculus GN=Map3k12 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.197e-14
Identity = 54/180 (30.00%), Postives = 92/180 (51.11%), Query Frame = 3
Query:  168 GQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLY-GRDRDP---LEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITG 695
            G+ VAVK+ +           ++++ L   +H N++   G C +     ++ E+   G L   L  GR   P   ++WS      +G A G+ YLH    +  I+HRD++  N+L+T+D    + DFG ++     D   +    GT  ++APE  ++  ++EK D++S GVVL EL+TG
Sbjct:  179 GEEVAVKKVRDLKE-------TDIKHLRKLKHPNIITFKGVCTQAPCYCILMEFCAQGQLYEVLRAGRPVTPSLLVDWS------MGIAGGMNYLH----LHKIIHRDLKSPNMLITYDDVVKISDFGTSKEL--SDKSTKMSFAGTVAWMAPEVIRNEPVSEKVDIWSFGVVLWELLTG 339          
The following BLAST results are available for this feature:
BLAST of FC920841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FGFR1_PLEWA4.745e-1429.34Fibroblast growth factor receptor 1 OS=Pleurodeles... [more]
FER_HUMAN4.745e-1430.69Proto-oncogene tyrosine-protein kinase Fer OS=Homo... [more]
SRK1_SPOLA6.197e-1430.73Tyrosine-protein kinase isoform SRK1 OS=Spongilla ... [more]
ROCO9_DICDI6.197e-1430.88Probable serine/threonine-protein kinase roco9 OS=... [more]
ROC11_DICDI6.197e-1432.35Probable serine/threonine-protein kinase roco11 OS... [more]
RMIL_AVII16.197e-1427.83Serine/threonine-protein kinase-transforming prote... [more]
RMIL_AVEVR6.197e-1427.83Serine/threonine-protein kinase-transforming prote... [more]
PKNK_MYCTU6.197e-1434.29Probable serine/threonine-protein kinase pknK OS=M... [more]
M3K12_RAT6.197e-1430.00Mitogen-activated protein kinase kinase kinase 12 ... [more]
M3K12_MOUSE6.197e-1430.00Mitogen-activated protein kinase kinase kinase 12 ... [more]

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Properties
Property NameValue
Genbank descriptionC32013F10EF RVDevelop1 Citrus clementina cDNA clone C32013F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920841 ID=FC920841; Name=FC920841; organism=Citrus clementina; type=EST; length=698bp
GTCCTCCTCCATTGTGTTCAACATGTCAGCACAAGGCACCTGTATTTGGT
AATCCTCCGAGGTGGTTCACCTATGCTGAATTGGAGCTTGCTACAAATAG
ATTTTCAGAAGCAAATTTCTTAGCCGAAGGTGGATTTGTGTCTGTTCACC
GAGGTGTTCTACCAGATGGCCAGGTTGTTGCCGTCAAGCAATATAAATTG
GCTAGTTCTCAAGGTGATCAAGAATTTTGCTCAGAAGTTGAGGTTTTAAG
TTGTGCACAACATCGCAATGTTGTGATGTTGATTGGATTCTGTGTGGAGG
ATGGGAGGAGATTGCTGGTTTATGAGTATATTTGCAATGGGTCCTTGGAT
TCCCATCTTTATGGACGTGATCGAGATCCACTGGAATGGTCTGCAAGGCG
AAAAATTGCGGTTGGAGCAGCTCGAGGGTTGCGATACCTTCATGAAGAAT
GTAGAGTGGGTTGTATCGTCCACCGTGATATGCGCCCTAACAACATTCTG
GTCACCCATGATTTTGAGCCACTGGTTGGGGATTTTGGACTAGCAAGATG
GCAACCAGATGGAGATATGGGAGTGGAAACAAGAGTACTCGGAACATTTG
GGTATTTAGCTCCAGAATATGCTCAGAGTGGTCAAATCACAGAAAAAGCT
GACGTCTATTCCCTTGGGGTAGTATTGGTGGAGCTCATTACNGGAAGG
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