FC920841

Overview
NameFC920841
Unique NameFC920841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: FGFR4_RAT (Fibroblast growth factor receptor 4 OS=Rattus norvegicus GN=Fgfr4 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 59/190 (31.05%), Postives = 91/190 (47.89%), Query Frame = 3
Query:  177 VAVKQYKLASSQGD-QEFCSEVEVLSC-AQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGR--------------DRDPLEWSARRKIAVGAARGLRYLH-EECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVET-RVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            VAVK  K  +S  D  +  SE+E++    +H+N++ L+G C ++G   ++ EY   G+L   L  R                 PL + A    A   ARG++YL   +C     +HRD+   N+LVT D    + DFGLAR     D   +T        ++APE       T ++DV+S G++L E+ T
Sbjct:  498 VAVKMLKDNASDKDLADLISEMEMMKLIGRHKNIINLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDLSPDGPRSSEGPLSFPALVSCAYQVARGMQYLESRKC-----IHRDLAARNVLVTEDDVMKIADFGLARGVHHIDYYKKTSNGRLPVKWMAPEALFDRVYTHQSDVWSFGILLWEIFT 682          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: FGFR3_PLEWA (Fibroblast growth factor receptor 3 OS=Pleurodeles waltlii GN=FGFR3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 70/242 (28.93%), Postives = 111/242 (45.87%), Query Frame = 3
Query:   57 PRWFTYAELELATNRFSEANFLAEGGF--------VSVHRGVLPDGQVVAVKQYKLASSQGD-QEFCSEVEVLSC-AQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARR--------------KIAVGAARGLRYL-HEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFG-----YLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            P+W      EL+ +R +    L EG F        V + +        VAVK  K  ++  D  +  SE+E++    +H+N++ L+G C +DG   ++ EY   G+L  +L  R    +++S                   A   ARG+ YL  ++C     +HRD+   N+LVT D    + DFGLAR   + D   +T    T G     ++APE       T ++DV+S GV+L E+ T
Sbjct:  448 PKW------ELSRSRLTLGKPLGEGCFGQVVMADAVGIEKDKPNKATSVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKC-----IHRDLAARNVLVTDDNVMKIADFGLARDVHNIDYYKKT----TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFT 674          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: FGFR1_RAT (Basic fibroblast growth factor receptor 1 OS=Rattus norvegicus GN=Fgfr1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 77/262 (29.39%), Postives = 118/262 (45.04%), Query Frame = 3
Query:    6 PPLCSTCQHKAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDG-----------QVVAVKQYKLASSQGD-QEFCSEVEVLSC-AQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHL-----------YGRDRDPLEWSARRKI---AVGAARGLRYL-HEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFG-----YLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            P L    +++ P     PRW      EL  +R      L EG F  V   VL +              VAVK  K  +++ D  +  SE+E++    +H+N++ L+G C +DG   ++ EY   G+L  +L           Y    +P E  + + +   A   ARG+ YL  ++C     +HRD+   N+LVT D    + DFGLAR     D   +T    T G     ++APE       T ++DV+S GV+L E+ T
Sbjct:  455 PMLAGVSEYELP---EDPRW------ELPRDRLVLGKPLGEGCFGQV---VLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT----TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 695          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: FGFR1_MOUSE (Basic fibroblast growth factor receptor 1 OS=Mus musculus GN=Fgfr1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 77/262 (29.39%), Postives = 118/262 (45.04%), Query Frame = 3
Query:    6 PPLCSTCQHKAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDG-----------QVVAVKQYKLASSQGD-QEFCSEVEVLSC-AQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHL-----------YGRDRDPLEWSARRKI---AVGAARGLRYL-HEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFG-----YLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            P L    +++ P     PRW      EL  +R      L EG F  V   VL +              VAVK  K  +++ D  +  SE+E++    +H+N++ L+G C +DG   ++ EY   G+L  +L           Y    +P E  + + +   A   ARG+ YL  ++C     +HRD+   N+LVT D    + DFGLAR     D   +T    T G     ++APE       T ++DV+S GV+L E+ T
Sbjct:  455 PMLAGVSEYELP---EDPRW------ELPRDRLVLGKPLGEGCFGQV---VLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT----TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 695          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: FGFR1_HUMAN (Basic fibroblast growth factor receptor 1 OS=Homo sapiens GN=FGFR1 PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 77/262 (29.39%), Postives = 118/262 (45.04%), Query Frame = 3
Query:    6 PPLCSTCQHKAPVFGNPPRWFTYAELELATNRFSEANFLAEGGFVSVHRGVLPDG-----------QVVAVKQYKLASSQGD-QEFCSEVEVLSC-AQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHL-----------YGRDRDPLEWSARRKI---AVGAARGLRYL-HEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFG-----YLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            P L    +++ P     PRW      EL  +R      L EG F  V   VL +              VAVK  K  +++ D  +  SE+E++    +H+N++ L+G C +DG   ++ EY   G+L  +L           Y    +P E  + + +   A   ARG+ YL  ++C     +HRD+   N+LVT D    + DFGLAR     D   +T    T G     ++APE       T ++DV+S GV+L E+ T
Sbjct:  455 PMLAGVSEYELP---EDPRW------ELPRDRLVLGKPLGEGCFGQV---VLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKC-----IHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKT----TNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFT 695          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: EPHB5_CHICK (Ephrin type-B receptor 5 OS=Gallus gallus GN=EPHB5 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.381e-13
Identity = 58/179 (32.40%), Postives = 94/179 (52.51%), Query Frame = 3
Query:  177 VAVKQYKLA-SSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAV--GAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARW-QPDGDMGVETRVLG---TFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            VA+K  K   + +  +EF SE  ++   +H NV+ L G   +    ++V E++ NGSLDS L  ++    ++S  + + +  G A G+RYL +       VHRD+   NILV  +    V DFGL+R+ + D      T  LG      + APE  Q  + T  +DV+S G+V+ E+++
Sbjct:  666 VAIKTLKSGYTDEQRREFLSEASIMGQFEHPNVIHLEGVVTKSRPVMIVTEFMENGSLDSFLRQKEG---QFSVLQLVGMLRGIAAGMRYLSDM----NYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDASNPTYTGALGCKIPIRWTAPEAVQYRKFTSSSDVWSYGIVMWEVMS 837          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: Y9847_DICDI (Probable serine/threonine-protein kinase DDB_G0267686 OS=Dictyostelium discoideum GN=DDB_G0267686 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 63/191 (32.98%), Postives = 92/191 (48.17%), Query Frame = 3
Query:  114 NFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVEL 686
            N L EG    V+R    + +V          SQ   +F  E+E++S  +  +VV   G  V D +  ++ EY  N +L  HL     +   W    K A+   RG+  LH    V  IVHRD++  N+LV+ ++   V DFGL+R+         T   GTF Y APE    G  T K D++S+G++L EL
Sbjct: 1953 NKLGEGTSAKVYRATWRNQEVAVKVLRSEPESQKLLDFLKELEIMSSLRSPHVVYFYGM-VLDPKICMIMEYCSNQTL-YHLMHLQMN-FTWDWVFKFAIEMVRGVNCLHSWKPV--IVHRDLKSLNLLVSDNWTIKVADFGLSRFATAKSASNRT-TRGTFAYCAPEVFY-GIHTTKGDIFSIGIILWEL 2136          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: RIPK2_HUMAN (Receptor-interacting serine/threonine-protein kinase 2 OS=Homo sapiens GN=RIPK2 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 59/211 (27.96%), Postives = 102/211 (48.34%), Query Frame = 3
Query:   96 NRFSEANFLAEGGFVSVHRGVLPDGQV-VAVKQYKLASSQGDQE---FCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDP-LEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQ----PDGDMGVETRVLGTFGYLAPEYAQSGQITE---KADVYSLGVVLVELIT 692
            ++ ++  +L+ G   +V      D +V VAVK   + +   D E      E E+L  A+   ++ ++G C E     +V EY+ NGSL+  L+ +   P + W  R +I    A G+ YLH       ++H D++  NIL+ ++F   + DFGL++W+                GT  Y+ PE  + GQ +    K D+YS  V+  E+++
Sbjct:   16 HKLADLRYLSRGASGTVSSARHADWRVQVAVKHLHIHTPLLDSERKDVLREAEILHKARFSYILPILGICNEPEFLGIVTEYMPNGSLNELLHRKTEYPDVAWPLRFRILHEIALGVNYLHN--MTPPLLHHDLKTQNILLDNEFHVKIADFGLSKWRMMSLSQSRSSKSAPEGGTIIYMPPENYEPGQKSRASIKHDIYSYAVITWEVLS 224          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: RAF_MSV36 (Serine/threonine-protein kinase-transforming protein raf OS=Murine sarcoma virus 3611 GN=V-RAF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 3
Query:  120 LAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGS-LDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLA----RWQPDGDMGVETRVLGTFGYLAPEYAQ---SGQITEKADVYSLGVVLVELITG 695
            +  G F +V++G       V + +    + +  Q F +EV VL   +H N+++ +G+  +D   L +    C GS L  HL+ ++    +      IA   A+G+ YLH +     I+HRDM+ NNI +       +GDFGLA    RW   G   VE +  G+  ++APE  +       + ++DVYS G+VL EL+ G
Sbjct:   30 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDN--LAIVTQWCEGSSLYKHLHVQETK-FQMFQLIDIARQTAQGMDYLHAKN----IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW--SGSQQVE-QPTGSVLWMAPEVIRMQDDNPFSFQSDVYSYGIVLYELMAG 219          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: RAF1_MOUSE (RAF proto-oncogene serine/threonine-protein kinase OS=Mus musculus GN=Raf1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 62/200 (31.00%), Postives = 100/200 (50.00%), Query Frame = 3
Query:  120 LAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGS-LDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLA----RWQPDGDMGVETRVLGTFGYLAPEYAQ---SGQITEKADVYSLGVVLVELITG 695
            +  G F +V++G       V + +    + +  Q F +EV VL   +H N+++ +G+  +D   L +    C GS L  HL+ ++    +      IA   A+G+ YLH +     I+HRDM+ NNI +       +GDFGLA    RW   G   VE +  G+  ++APE  +       + ++DVYS G+VL EL+ G
Sbjct:  355 IGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQLQAFRNEVAVLRKTRHVNILLFMGYMTKDN--LAIVTQWCEGSSLYKHLHVQETK-FQMFQLIDIARQTAQGMDYLHAKN----IIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW--SGSQQVE-QPTGSVLWMAPEVIRMQDDNPFSFQSDVYSYGIVLYELMAG 544          
The following BLAST results are available for this feature:
BLAST of FC920841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FGFR4_RAT1.381e-1331.05Fibroblast growth factor receptor 4 OS=Rattus norv... [more]
FGFR3_PLEWA1.381e-1328.93Fibroblast growth factor receptor 3 OS=Pleurodeles... [more]
FGFR1_RAT1.381e-1329.39Basic fibroblast growth factor receptor 1 OS=Rattu... [more]
FGFR1_MOUSE1.381e-1329.39Basic fibroblast growth factor receptor 1 OS=Mus m... [more]
FGFR1_HUMAN1.381e-1329.39Basic fibroblast growth factor receptor 1 OS=Homo ... [more]
EPHB5_CHICK1.381e-1332.40Ephrin type-B receptor 5 OS=Gallus gallus GN=EPHB5... [more]
Y9847_DICDI1.803e-1332.98Probable serine/threonine-protein kinase DDB_G0267... [more]
RIPK2_HUMAN1.803e-1327.96Receptor-interacting serine/threonine-protein kina... [more]
RAF_MSV361.803e-1331.00Serine/threonine-protein kinase-transforming prote... [more]
RAF1_MOUSE1.803e-1331.00RAF proto-oncogene serine/threonine-protein kinase... [more]

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Properties
Property NameValue
Genbank descriptionC32013F10EF RVDevelop1 Citrus clementina cDNA clone C32013F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920841 ID=FC920841; Name=FC920841; organism=Citrus clementina; type=EST; length=698bp
GTCCTCCTCCATTGTGTTCAACATGTCAGCACAAGGCACCTGTATTTGGT
AATCCTCCGAGGTGGTTCACCTATGCTGAATTGGAGCTTGCTACAAATAG
ATTTTCAGAAGCAAATTTCTTAGCCGAAGGTGGATTTGTGTCTGTTCACC
GAGGTGTTCTACCAGATGGCCAGGTTGTTGCCGTCAAGCAATATAAATTG
GCTAGTTCTCAAGGTGATCAAGAATTTTGCTCAGAAGTTGAGGTTTTAAG
TTGTGCACAACATCGCAATGTTGTGATGTTGATTGGATTCTGTGTGGAGG
ATGGGAGGAGATTGCTGGTTTATGAGTATATTTGCAATGGGTCCTTGGAT
TCCCATCTTTATGGACGTGATCGAGATCCACTGGAATGGTCTGCAAGGCG
AAAAATTGCGGTTGGAGCAGCTCGAGGGTTGCGATACCTTCATGAAGAAT
GTAGAGTGGGTTGTATCGTCCACCGTGATATGCGCCCTAACAACATTCTG
GTCACCCATGATTTTGAGCCACTGGTTGGGGATTTTGGACTAGCAAGATG
GCAACCAGATGGAGATATGGGAGTGGAAACAAGAGTACTCGGAACATTTG
GGTATTTAGCTCCAGAATATGCTCAGAGTGGTCAAATCACAGAAAAAGCT
GACGTCTATTCCCTTGGGGTAGTATTGGTGGAGCTCATTACNGGAAGG
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