FC920841

Overview
NameFC920841
Unique NameFC920841
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: SRK2_SPOLA (Tyrosine-protein kinase SRK2 (Fragment) OS=Spongilla lacustris GN=SRK2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 56/203 (27.59%), Postives = 94/203 (46.31%), Query Frame = 3
Query:   84 ELATNRFSEANFLAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            E++ +  +    L  G F  V++G+  +   VAVK  K  + Q    F +E +++   +H  ++ L   C +     ++ E +  GSL  +L G +   L+      +A   A G+ YL     +   +HRD+   NILV  +    V DFGLAR     D            + APE A   + + K+DV+S G+++ EL+T
Sbjct:   89 EISRDSITLIRKLGAGQFGEVYQGLWNNSTPVAVKTLKAGTMQ-PAAFLAEAQIMKKLRHPKLIQLYAVCTQGEPVYIITELMSKGSLLDYLQG-EAGALKLPQLIDMAAQVAAGMAYLE----LHNYIHRDLAARNILVGDNNICKVADFGLARLIVSDDYNATEGAKFPIKWTAPEAALFNRFSIKSDVWSFGILITELVT 285          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: SRC_HUMAN (Proto-oncogene tyrosine-protein kinase Src OS=Homo sapiens GN=SRC PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 61/191 (31.94%), Postives = 84/191 (43.98%), Query Frame = 3
Query:  120 LAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            L +G F  V  G       VA+K  K   +   + F  E +V+   +H  +V L     E+    +V EY+  GSL   L G     L       +A   A G+ Y+         VHRD+R  NILV  +    V DFGLAR   D +            + APE A  G+ T K+DV+S G++L EL T
Sbjct:  276 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMN----YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 460          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: SRC1_XENLA (Tyrosine-protein kinase Src-1 OS=Xenopus laevis GN=src-A PE=2 SV=4)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 62/191 (32.46%), Postives = 84/191 (43.98%), Query Frame = 3
Query:  120 LAEGGFVSVHRGVLPDGQVVAVKQYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            L +G F  V  G       VA+K  K   +   + F  E +V+   +H  +V L     E+    +V EYI  GSL   L G     L       +A   A G+ Y+         VHRD+R  NILV  +    V DFGLAR   D +            + APE A  G+ T K+DV+S G++L EL T
Sbjct:  272 LGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLVQLYAVVSEEPI-YIVTEYISKGSLLDFLKGEMGRYLRLPQLVDMAAQIASGMAYVERMN----YVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTT 456          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: PLK3_MOUSE (Serine/threonine-protein kinase PLK3 OS=Mus musculus GN=Plk3 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 60/208 (28.85%), Postives = 99/208 (47.60%), Query Frame = 3
Query:   87 LATNRFSEANFLAEGGFVSVHRGV-LPDGQVVAVK---QYKLASSQGDQEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGL-ARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITG 695
            L+   +++   L +GGF   +       G   AVK   Q ++A     ++  +E+E+    QHR++V       ED   + ++  +C+    +H++      LE   R  +      GL+YLH+      I+HRD++  N  +T + E  VGDFGL AR +P      +  + GT  Y+APE         +ADV+SLG V+  L+ G
Sbjct:   58 LSGRTYTKGRLLGKGGFARCYEATDTESGIAYAVKVIPQSRVAKPHQREKILNEIELHRDLQHRHIVRF-SHHFEDADNIYIFLELCSRKSLAHIWKARHTLLEPEVRYYLRQ-ILSGLKYLHQRG----ILHRDLKLGNFFITDNMELKVGDFGLAARLEPPEQR--KKTICGTPNYVAPEVLLRQGHGPEADVWSLGCVMYTLLCG 257          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: NEK10_HUMAN (Serine/threonine-protein kinase Nek10 OS=Homo sapiens GN=NEK10 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 51/146 (34.93%), Postives = 74/146 (50.68%), Query Frame = 3
Query:  261 HRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARR--KIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            H N+V      +E+ R  +V E I    L  H          ++  R  KI +     LRYLH+E R   IVHRD+ PNNI++    +  V DFGLA+ + +      T V+GT  Y  PE  +S    EKADV+++G +L ++ T
Sbjct:  584 HPNIVRYYKTFLENDRLYIVMELIEGAPLGEHFSSLKEKHHHFTEERLWKIFIQLCLALRYLHKEKR---IVHRDLTPNNIMLGDKDKVTVADFGLAKQKQENSK--LTSVVGTILYSCPEVLKSEPYGEKADVWAVGCILYQMAT 724          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: MP2K2_RAT (Dual specificity mitogen-activated protein kinase kinase 2 OS=Rattus norvegicus GN=Map2k2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 63/207 (30.43%), Postives = 99/207 (47.83%), Query Frame = 3
Query:   84 ELATNRFSEANFLAEG-GFVSVHRGVLPDGQVVAVKQYKLASSQGDQ-EFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            EL  + F   + L  G G V       P G ++A K   L      + +   E++VL       +V   G    DG   +  E++  GSLD  L    R P +     K+++   RGL YL E+ +   I+HRD++P+NILV    E  + DFG++    D    +    +GT  Y++PE  Q    + ++D++S+G+ LVEL  GR
Sbjct:   66 ELKDDDFERISELGAGNGGVVTKARHRPSGLIMARKLIHLEIKPAVRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEDILG--KVSIAVLRGLAYLREKHQ---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGR 264          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: MP2K2_CHICK (Dual specificity mitogen-activated protein kinase kinase 2 OS=Gallus gallus GN=MAP2K2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 57/180 (31.67%), Postives = 90/180 (50.00%), Query Frame = 3
Query:  162 PDGQVVAVKQYKLASSQGDQ-EFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            P G ++A K   L      + +   E++VL       +V   G    DG   +  E++  GSLD  L    R P E     K+++   RGL YL E+ +   I+HRD++P+NILV    E  + DFG++    D    +    +GT  Y++PE  Q    + ++D++S+G+ LVEL  GR
Sbjct:   91 PSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILG--KVSIAVLRGLAYLREKHQ---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELSIGR 262          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: MP2K2_CANFA (Dual specificity mitogen-activated protein kinase kinase 2 OS=Canis familiaris GN=MAP2K2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 57/180 (31.67%), Postives = 90/180 (50.00%), Query Frame = 3
Query:  162 PDGQVVAVKQYKLASSQGDQ-EFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            P G ++A K   L      + +   E++VL       +V   G    DG   +  E++  GSLD  L    R P E     K+++   RGL YL E+ +   I+HRD++P+NILV    E  + DFG++    D    +    +GT  Y++PE  Q    + ++D++S+G+ LVEL  GR
Sbjct:   93 PSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKEAKRIPEEILG--KVSIAVLRGLAYLREKHQ---IMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS---MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELSIGR 264          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: M2K2_ARATH (Mitogen-activated protein kinase kinase 2 OS=Arabidopsis thaliana GN=MKK2 PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 51/178 (28.65%), Postives = 92/178 (51.69%), Query Frame = 3
Query:  168 GQVVAVKQYKLASSQGDQE-FCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGRDRDPLEWSARRKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFGYLAPEYAQSGQITEKADVYSLGVVLVELITGR 698
            GQ  A+K  +L   +  ++    E+++   +Q  N+V       ++G   L+ EY+  GSL   L      P  + +   I     +GL YLH +     I+HRD++P+N+L+ H  E  + DFG++    +   G+    +GT+ Y++PE     +   K+D++SLG+V++E  TG+
Sbjct:   93 GQFFALKVIQLNIDEAIRKAIAQELKINQSSQCPNLVTSYQSFYDNGAISLILEYMDGGSLADFLKSVKAIPDSYLSA--IFRQVLQGLIYLHHDRH---IIHRDLKPSNLLINHRGEVKITDFGVSTVMTN-TAGLANTFVGTYNYMSPERIVGNKYGNKSDIWSLGLVVLECATGK 264          
BLAST of FC920841 vs. ExPASy Swiss-Prot
Match: FGFR2_DANRE (Fibroblast growth factor receptor 2 OS=Danio rerio GN=fgfr2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.017e-13
Identity = 66/242 (27.27%), Postives = 110/242 (45.45%), Query Frame = 3
Query:   57 PRWFTYAELELATNRFSEANFLAEGGF--------VSVHRGVLPDGQVVAVKQYKLASSQGD-QEFCSEVEVLSC-AQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSHLYGR--------------DRDPLEWSARRKIAVGAARGLRYL-HEECRVGCIVHRDMRPNNILVTHDFEPLVGDFGLARWQPDGDMGVETRVLGTFG-----YLAPEYAQSGQITEKADVYSLGVVLVELIT 692
            PRW      E + ++ +    L EG F        + + +    +   VAVK  K  +++ D  +  SE+E++    +H+N++ L+G C +DG   ++ EY   G+L  +L  R                +PL +          ARG+ YL  ++C     +HRD+   N+LVT      + DFGLAR   + D   +T    T G     ++APE       T ++DV+S GV++ E+ T
Sbjct:  468 PRW------EFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGRHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVSDEPLTFKDLVSCTYQVARGMEYLASQKC-----IHRDLAARNVLVTESNVMKIADFGLARDVHNIDYYKKT----TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 694          
The following BLAST results are available for this feature:
BLAST of FC920841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SRK2_SPOLA4.017e-1327.59Tyrosine-protein kinase SRK2 (Fragment) OS=Spongil... [more]
SRC_HUMAN4.017e-1331.94Proto-oncogene tyrosine-protein kinase Src OS=Homo... [more]
SRC1_XENLA4.017e-1332.46Tyrosine-protein kinase Src-1 OS=Xenopus laevis GN... [more]
PLK3_MOUSE4.017e-1328.85Serine/threonine-protein kinase PLK3 OS=Mus muscul... [more]
NEK10_HUMAN4.017e-1334.93Serine/threonine-protein kinase Nek10 OS=Homo sapi... [more]
MP2K2_RAT4.017e-1330.43Dual specificity mitogen-activated protein kinase ... [more]
MP2K2_CHICK4.017e-1331.67Dual specificity mitogen-activated protein kinase ... [more]
MP2K2_CANFA4.017e-1331.67Dual specificity mitogen-activated protein kinase ... [more]
M2K2_ARATH4.017e-1328.65Mitogen-activated protein kinase kinase 2 OS=Arabi... [more]
FGFR2_DANRE4.017e-1327.27Fibroblast growth factor receptor 2 OS=Danio rerio... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013F10EF RVDevelop1 Citrus clementina cDNA clone C32013F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920841 ID=FC920841; Name=FC920841; organism=Citrus clementina; type=EST; length=698bp
GTCCTCCTCCATTGTGTTCAACATGTCAGCACAAGGCACCTGTATTTGGT
AATCCTCCGAGGTGGTTCACCTATGCTGAATTGGAGCTTGCTACAAATAG
ATTTTCAGAAGCAAATTTCTTAGCCGAAGGTGGATTTGTGTCTGTTCACC
GAGGTGTTCTACCAGATGGCCAGGTTGTTGCCGTCAAGCAATATAAATTG
GCTAGTTCTCAAGGTGATCAAGAATTTTGCTCAGAAGTTGAGGTTTTAAG
TTGTGCACAACATCGCAATGTTGTGATGTTGATTGGATTCTGTGTGGAGG
ATGGGAGGAGATTGCTGGTTTATGAGTATATTTGCAATGGGTCCTTGGAT
TCCCATCTTTATGGACGTGATCGAGATCCACTGGAATGGTCTGCAAGGCG
AAAAATTGCGGTTGGAGCAGCTCGAGGGTTGCGATACCTTCATGAAGAAT
GTAGAGTGGGTTGTATCGTCCACCGTGATATGCGCCCTAACAACATTCTG
GTCACCCATGATTTTGAGCCACTGGTTGGGGATTTTGGACTAGCAAGATG
GCAACCAGATGGAGATATGGGAGTGGAAACAAGAGTACTCGGAACATTTG
GGTATTTAGCTCCAGAATATGCTCAGAGTGGTCAAATCACAGAAAAAGCT
GACGTCTATTCCCTTGGGGTAGTATTGGTGGAGCTCATTACNGGAAGG
back to top