FC920842
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20 Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 3 Query: 327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665 ++G+ V+GVV Q + + GL PG HG H+H+YGD T C S G HFNP+ +HG P+D RH GDLGN+ A A+G A I D Q+ + V+GR+ VV E Sbjct: 93 MEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKV---WDVIGRSLVVDE 202
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20 Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 3 Query: 327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665 L+G +++GVV Q + + GL PG HG H+H+YGD T C S G HFNP+ +HG P+D RH GDLGN+ A A G A I D Q+ + V+GR+ V+ E Sbjct: 93 LEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKV---WDVIGRSLVIDE 202
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20 Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 3 Query: 327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665 L G V+GVV Q + + GL PG HG H+H+YGD TN C S G HFNP+ +HG P+D RH GDLGN+ A+A+G A + D Q+ + V+GR+ ++ E Sbjct: 93 LGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDE 202
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.607e-19 Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 3 Query: 384 PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNI-VANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662 P ++ + L G HGFH+HE+GDT+NGC S G HFNP HGAP RH GDLGN+ A + + DN I+L GP +++GR+ VVH Sbjct: 25 PVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNVRSAGCTALTAIHMSDNVITLFGPLSILGRSLVVH 118
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19 Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 3 Query: 327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665 L G+ V+GVV Q + + GL PG HG H+H++GD T C S G HFNP+ M+HG P+D RH GDLGN+ A+A+G A + D + + V+GR+ V+ E Sbjct: 93 LGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKV---WDVIGRSLVIDE 202
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17 Identity = 47/115 (40.87%), Postives = 62/115 (53.91%), Query Frame = 3 Query: 327 LKGTSN-VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665 LKGT+ V G V QE D P + ++ GL PG HGFH+H +GD TN TH P D+ RH GDLGN VA+ I D ++L+GP +++GR V+HE Sbjct: 8 LKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGN-------VAKIDITDKMLTLNGPLSIIGRTMVIHE 115
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.061e-12 Identity = 45/105 (42.86%), Postives = 51/105 (48.57%), Query Frame = 3 Query: 351 GVVTLTQEDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662 G V TQ G VN V GL PG G H+H YG N C+ G HFNP N HG RHAGDLGNI GVA+ L + +GRA V+H Sbjct: 47 GAVWFTQH-GDYMYVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAKFDFYVTIKGLGPFDGFIGRALVIH 150
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12 Identity = 69/197 (35.03%), Postives = 86/197 (43.65%), Query Frame = 3 Query: 87 MAHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXAFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTT--NGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDG--PNTVVGRAFVVHE 665 MA LV+ P SS +LL T +F GVS+K + S A ++ KPLT LKG S VEG TL Q++ + V + GF + Y +S H + +DE+RHAGDLGNIVANA GVAE QI PN+VVGRA VVHE Sbjct: 1 MASQTLVSPSPLSSPSLLRT----------------------SFSGVSVKLAPQF--STLATSNFKPLTVVAAAKKAVAVLKGQSRVEGSSTLHQDERQQQLMFVSLAYT----QGFMVFTYMSMVIPQMGVSQQDHILIQQVDTWCSEDEIRHAGDLGNIVANAEGVAECR-QSWQIRYHSLRPNSVVGRALVVHE 168 The following BLAST results are available for this feature:
BLAST of FC920842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920842 ID=FC920842; Name=FC920842; organism=Citrus clementina; type=EST; length=666bpback to top |