FC920842

Overview
NameFC920842
Unique NameFC920842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920842_ssr180 microsatellite FC920842_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:67..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: CCS_RAT (Copper chaperone for superoxide dismutase OS=Rattus norvegicus GN=Ccs PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 49/113 (43.36%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            ++G+  V+GVV   Q       +   + GL PG HG H+H+YGD T  C S G HFNP+  +HG P+D  RH GDLGN+ A A+G A   I D Q+ +     V+GR+ VV E
Sbjct:   93 MEGSGTVQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTKDCSSCGDHFNPDGASHGGPQDTDRHRGDLGNVHAEASGRATFRIEDKQLKV---WDVIGRSLVVDE 202          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: CCS_MOUSE (Copper chaperone for superoxide dismutase OS=Mus musculus GN=Ccs PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 48/113 (42.48%), Postives = 65/113 (57.52%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            L+G  +++GVV   Q       +   + GL PG HG H+H+YGD T  C S G HFNP+  +HG P+D  RH GDLGN+ A A G A   I D Q+ +     V+GR+ V+ E
Sbjct:   93 LEGCGSIQGVVRFLQLSSELCLIEGTIDGLEPGLHGLHVHQYGDLTRDCNSCGDHFNPDGASHGGPQDTDRHRGDLGNVRAEAGGRATFRIEDKQLKV---WDVIGRSLVIDE 202          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: CCS_HUMAN (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 48/113 (42.48%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            L G   V+GVV   Q       +   + GL PG HG H+H+YGD TN C S G HFNP+  +HG P+D  RH GDLGN+ A+A+G A   + D Q+ +     V+GR+ ++ E
Sbjct:   93 LGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKV---WDVIGRSLIIDE 202          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_NPVOP (Putative superoxide dismutase [Cu-Zn] OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=SOD PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.607e-19
Identity = 44/94 (46.81%), Postives = 58/94 (61.70%), Query Frame = 3
Query:  384 PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNI-VANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            P ++   +  L  G HGFH+HE+GDT+NGC S G HFNP    HGAP    RH GDLGN+  A    +    + DN I+L GP +++GR+ VVH
Sbjct:   25 PVSITGYLLNLPRGLHGFHVHEFGDTSNGCTSAGEHFNPTRQRHGAPDAAERHVGDLGNVRSAGCTALTAIHMSDNVITLFGPLSILGRSLVVH 118          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: CCS_PIG (Copper chaperone for superoxide dismutase OS=Sus scrofa GN=CCS PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 47/113 (41.59%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            L G+  V+GVV   Q       +   + GL PG HG H+H++GD T  C S G HFNP+ M+HG P+D  RH GDLGN+ A+A+G A   + D  + +     V+GR+ V+ E
Sbjct:   93 LGGSGPVQGVVRFLQLTPERCLIEGTIDGLKPGLHGLHVHQFGDLTRNCNSCGDHFNPDGMSHGGPQDSDRHRGDLGNVCADADGRAVFRMEDELLKV---WDVIGRSLVIDE 202          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_LAMCR (Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampanyctus crocodilus GN=sod1 PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 47/115 (40.87%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  327 LKGTSN-VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKGT+  V G V   QE D  P  +  ++ GL PG HGFH+H +GD TN              TH  P D+ RH GDLGN       VA+  I D  ++L+GP +++GR  V+HE
Sbjct:    8 LKGTTGEVTGTVYFEQESDSAPVKLTGQIIGLAPGLHGFHVHAFGDNTNXXXXXXXXXXXXXXTHAGPTDKDRHVGDLGN-------VAKIDITDKMLTLNGPLSIIGRTMVIHE 115          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODE_SCHMA (Extracellular superoxide dismutase [Cu-Zn] OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.061e-12
Identity = 45/105 (42.86%), Postives = 51/105 (48.57%), Query Frame = 3
Query:  351 GVVTLTQEDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            G V  TQ  G    VN  V GL PG   G H+H YG   N C+  G HFNP N  HG      RHAGDLGNI     GVA+         L   +  +GRA V+H
Sbjct:   47 GAVWFTQH-GDYMYVNGSVAGLPPGKLLGTHVHRYGGLGNMCLEAGPHFNPFNQRHGPRHGYPRHAGDLGNIRVGRGGVAKFDFYVTIKGLGPFDGFIGRALVIH 150          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODCP_POPTM (Superoxide dismutase [Cu-Zn], chloroplastic OS=Populus tremuloides GN=SODCP PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 69/197 (35.03%), Postives = 86/197 (43.65%), Query Frame = 3
Query:   87 MAHVLLVAAPPSSSHTLLATLPNPXXXXXXXXXXXXXXXXXXAFHGVSLKFPSRLNLSLAAVASKKPLTXXXXXXXXXXXLKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTT--NGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDG--PNTVVGRAFVVHE 665
            MA   LV+  P SS +LL T                      +F GVS+K   +   S  A ++ KPLT           LKG S VEG  TL Q++     + V +        GF +  Y         +S   H     +     +DE+RHAGDLGNIVANA GVAE      QI      PN+VVGRA VVHE
Sbjct:    1 MASQTLVSPSPLSSPSLLRT----------------------SFSGVSVKLAPQF--STLATSNFKPLTVVAAAKKAVAVLKGQSRVEGSSTLHQDERQQQLMFVSLAYT----QGFMVFTYMSMVIPQMGVSQQDHILIQQVDTWCSEDEIRHAGDLGNIVANAEGVAECR-QSWQIRYHSLRPNSVVGRALVVHE 168          
The following BLAST results are available for this feature:
BLAST of FC920842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
CCS_RAT3.079e-2043.36Copper chaperone for superoxide dismutase OS=Rattu... [more]
CCS_MOUSE6.860e-2042.48Copper chaperone for superoxide dismutase OS=Mus m... [more]
CCS_HUMAN8.959e-2042.48Copper chaperone for superoxide dismutase OS=Homo ... [more]
SODC_NPVOP2.607e-1946.81Putative superoxide dismutase [Cu-Zn] OS=Orgyia ps... [more]
CCS_PIG5.807e-1941.59Copper chaperone for superoxide dismutase OS=Sus s... [more]
SODC_LAMCR4.162e-1740.87Superoxide dismutase [Cu-Zn] (Fragment) OS=Lampany... [more]
SODE_SCHMA1.061e-1242.86Extracellular superoxide dismutase [Cu-Zn] OS=Schi... [more]
SODCP_POPTM2.363e-1235.03Superoxide dismutase [Cu-Zn], chloroplastic OS=Pop... [more]

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Properties
Property NameValue
Genbank descriptionC32013F11EF RVDevelop1 Citrus clementina cDNA clone C32013F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920842 ID=FC920842; Name=FC920842; organism=Citrus clementina; type=EST; length=666bp
GGGGACCCAGAAACACAAAATCCCATTATCAATTAACATCATCCACCCGC
TCACCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCT
CCTCGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGC
CAAATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCC
TCGCTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCT
CAACTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTG
CTGCCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAA
GGAGTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGT
TCGTGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAAT
ATGGTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCT
AATAACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGA
CCTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTG
TGGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCC
TTTGTGGTTCATGAGC
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