FC920842

Overview
NameFC920842
Unique NameFC920842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920842_ssr180 microsatellite FC920842_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:67..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC5_MAIZE (Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.869e-34
Identity = 65/112 (58.04%), Postives = 81/112 (72.32%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V+G +  TQE  GPT V   V+GL PG HGFH+H  GDTTNGC+STG H+NP +  HGAP+DE RHAGDLGN+ A A+GVA   + D+QI L GPN+++GRA VVH
Sbjct:    8 LGSSDGVKGTIFFTQEGDGPTAVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPASKEHGAPEDENRHAGDLGNVTAGADGVANINVTDSQIPLTGPNSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 6.391e-34
Identity = 64/112 (57.14%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G +  TQ+   PTTVN  ++GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DEVRHAGDLGNI    +G A  TI D QI L GP +++GRA VVH
Sbjct:    8 LNSSEGVSGTILFTQDGAAPTTVNGNISGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDEVRHAGDLGNITVGEDGTASFTITDKQIPLTGPQSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSJ (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 6.391e-34
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  345 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            V+G +   QE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DE RHAGDLGN+ A  +GVA   +VD+QI L GPN+++GRA VVH
Sbjct:   14 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC1_ORYSI (Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 6.391e-34
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 3
Query:  345 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            V+G +   QE  GPTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DE RHAGDLGN+ A  +GVA   +VD+QI L GPN+++GRA VVH
Sbjct:   14 VKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGPHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_PEA (Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=SODCC PE=2 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.346e-34
Identity = 65/112 (58.04%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  ++ V G +  +QE  GPTTV   + GL PG HGFH+H  GDTTNGCISTG HFNPN   HGAP+DE RHAGDLGNI    +G    TI DN I L G N+++GRA VVH
Sbjct:    8 LSNSNEVSGTINFSQEGNGPTTVTGTLAGLKPGLHGFHIHALGDTTNGCISTGPHFNPNGKEHGAPEDETRHAGDLGNINVGDDGTVSFTITDNHIPLTGTNSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_PRIGL (Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN=sod1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.859e-33
Identity = 64/113 (56.64%), Postives = 75/113 (66.37%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKGT  V G V   Q   GP T+   +TGLTPG HGFH+H +GD TNGCIS G H+NP +  HG P DE RH GDLGN+ AN NGVAE  I D Q+ L G  +++GR  VVHE
Sbjct:    7 LKGTGEVTGTVLFEQAADGPVTLKGSITGLTPGKHGFHVHAFGDNTNGCISAGPHYNPFSKNHGGPDDEERHVGDLGNVEANGNGVAEFEIKDRQLHLSGERSIIGRTLVVHE 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.428e-33
Identity = 65/112 (58.04%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V+G +  T E  G TTV   V+GL PG HGFH+H  GD TNGC+STG HFNP+  THGAP+D  RHAGDLGNI+   +G A  TI D+QI L GPN++VGRA VVH
Sbjct:    8 LNSSEGVKGTIFFTHEGNGATTVTGTVSGLRPGLHGFHVHALGDNTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNIIVGDDGTATFTITDSQIPLSGPNSIVGRAIVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.142e-33
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G +  TQE  G TTV+  V+GL PG HGFH+H  GDTTNGC+STG HFNP+  THGAP+D  RHAGDLGNI    +G A  TI D QI L GPN++VGRA VVH
Sbjct:    8 LNSSEGVTGTIFFTQEGDGVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPDGKTHGAPEDANRHAGDLGNITVGDDGTATFTITDCQIPLTGPNSIVGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_ANACO (Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.142e-33
Identity = 63/112 (56.25%), Postives = 77/112 (68.75%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V+G +  TQE  GPTTV   ++GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+DE RHAGDLGN+    +G     IVD+QI L G N+++GRA VVH
Sbjct:    8 LGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC2_ORYSJ (Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.410e-33
Identity = 64/112 (57.14%), Postives = 80/112 (71.43%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V+G +  +QE  GPT+V   V+GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+DE RHAGDLGNI A A+GVA   + D+QI L G ++++GRA VVH
Sbjct:    8 LASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVH 119          
The following BLAST results are available for this feature:
BLAST of FC920842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODC5_MAIZE2.869e-3458.04Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SO... [more]
SODC2_SOLLC6.391e-3457.14Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC1_ORYSJ6.391e-3460.38Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC1_ORYSI6.391e-3460.38Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa sub... [more]
SODC_PEA8.346e-3458.04Superoxide dismutase [Cu-Zn] OS=Pisum sativum GN=S... [more]
SODC_PRIGL1.859e-3356.64Superoxide dismutase [Cu-Zn] OS=Prionace glauca GN... [more]
SODC_BRAOC2.428e-3358.04Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_ARATH4.142e-3359.82Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC_ANACO4.142e-3356.25Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=... [more]
SODC2_ORYSJ5.410e-3357.14Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionC32013F11EF RVDevelop1 Citrus clementina cDNA clone C32013F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920842 ID=FC920842; Name=FC920842; organism=Citrus clementina; type=EST; length=666bp
GGGGACCCAGAAACACAAAATCCCATTATCAATTAACATCATCCACCCGC
TCACCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCT
CCTCGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGC
CAAATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCC
TCGCTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCT
CAACTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTG
CTGCCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAA
GGAGTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGT
TCGTGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAAT
ATGGTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCT
AATAACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGA
CCTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTG
TGGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCC
TTTGTGGTTCATGAGC
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