FC920842

Overview
NameFC920842
Unique NameFC920842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920842_ssr180 microsatellite FC920842_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:67..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_DANRE (Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod1 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.580e-32
Identity = 62/114 (54.39%), Postives = 79/114 (69.30%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKGT  V G V   QE +  P  V   +TGLTPG HGFH+H +GD TNGCIS G HFNP++ THG P D VRH GDLGN+ A+A+GVA+  I D  ++L G ++++GR  V+HE
Sbjct:    9 LKGTGEVTGTVYFNQEGEKKPVKVTGEITGLTPGKHGFHVHAFGDNTNGCISAGPHFNPHDKTHGGPTDSVRHVGDLGNVTADASGVAKIEIEDAMLTLSGQHSIIGRTMVIHE 122          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_SOLCS (Superoxide dismutase [Cu-Zn] OS=Solidago canadensis var. scabra GN=SODCC PE=2 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 63/113 (55.75%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G +  +QE +G PTTV   ++GL PGPHGFH+H  GDTTNGC+STG H+NP+   HGAP DE RHAGDLGN+    +G A+ TIVD QI L G  +++GRA VVH
Sbjct:    8 LSSSEGVSGTIFFSQEAEGAPTTVTGDLSGLKPGPHGFHVHALGDTTNGCMSTGPHYNPHGKDHGAPDDEHRHAGDLGNVTVGEDGTAKFTIVDKQIPLIGAQSIIGRAVVVH 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CARCR (Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 5.981e-32
Identity = 59/107 (55.14%), Postives = 75/107 (70.09%), Query Frame = 3
Query:  345 VEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            V+G++   Q+  GP T++  +TGLT G HGFH+HE+GD TNGC S GAHFNP    HG P+D  RH GDLGN++AN  GVAE  I D+ ISL G  +++GR  VVHE
Sbjct:   28 VKGIIYFEQQGNGPVTLSGSITGLTEGKHGFHVHEFGDNTNGCTSAGAHFNPPGKNHGGPQDNERHVGDLGNVIANKEGVAEVCIKDSLISLTGSQSIIGRTMVVHE 134          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.020e-31
Identity = 63/112 (56.25%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L G+  V+G V   QE  GPTT+   ++GL PG HGFH+H  GDTTNGC+STG HFNP    HGAP+D  RHAGDLGN+    +G    T+ D+QI L G N+VVGRA VVH
Sbjct:    8 LTGSEGVQGTVFFAQEGEGPTTITGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDGNRHAGDLGNVTVGEDGTVNFTVTDSQIPLTGLNSVVGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_HYLLA (Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=SOD1 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.740e-31
Identity = 62/114 (54.39%), Postives = 80/114 (70.18%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG S V+G++   Q E  GP  V  R+TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA+ +I D+ ISL G ++++GR  VVHE
Sbjct:    9 LKGDSPVQGIINFEQKESNGPVKVYGRITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVAKVSIEDSVISLSGDHSIIGRTLVVHE 122          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CHICK (Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.740e-31
Identity = 62/112 (55.36%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            +KG + VEGV+   Q+  GP  V  ++TGL+ G HGFH+HE+GD TNGC S GAHFNP    HG PKD  RH GDLGN+ A   GVAE  I D+ ISL GP+ ++GR  VVH
Sbjct:   10 MKGDAPVEGVIHFQQQGSGPVKVTGKITGLSDGDHGFHVHEFGDNTNGCTSAGAHFNPEGKQHGGPKDADRHVGDLGNVTAK-GGVAEVEIEDSVISLTGPHCIIGRTMVVH 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 135.191 bits (339), Expect = 2.969e-31
Identity = 64/112 (57.14%), Postives = 76/112 (67.86%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V+G +   QE  G TTV   V+GL PG HGFH+H  GDTTNG +STG HFNP+   HGAP+D  RHAGDLGNI+   +G A  TI D QI L GPN++VGRA VVH
Sbjct:    8 LNSSEGVKGTIFFAQEGEGKTTVTGTVSGLKPGLHGFHVHALGDTTNGSMSTGPHFNPDGKQHGAPEDANRHAGDLGNIIVGDDGTATFTITDCQIPLSGPNSIVGRAVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.877e-31
Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L  +  V G +  +Q+   PTTV   V+GL PG HGFH+H  GDTTNGC+STG H+NP    HGAP+DE RHAGDLGNI    +G A  TI D QI L GP +++GR  VVH
Sbjct:    8 LSSSECVSGTILFSQDGDAPTTVTGNVSGLKPGLHGFHVHALGDTTNGCMSTGPHYNPAGKEHGAPEDENRHAGDLGNITVGEDGTASFTITDEQIPLTGPQSIIGRGVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC2_XENLA (Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis GN=sod1-B PE=1 SV=3)

HSP 1 Score: 134.42 bits (337), Expect = 5.064e-31
Identity = 62/113 (54.87%), Postives = 79/113 (69.91%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            L G+ +V+GVV   Q+D G  +V  ++ GLT G HGFH+H +GD TNGC+S G+HFNP N  HGAP D  RH GDLGN+ A   GVA+  I D+ ISL GPN+++GR  VVHE
Sbjct:    8 LAGSGDVKGVVHFEQQDEGAVSVEGKIEGLTDGLHGFHIHVFGDNTNGCMSAGSHFNPENKNHGAPGDTDRHVGDLGNVTAE-GGVAQFKITDSLISLKGPNSIIGRTAVVHE 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_HAECO (Superoxide dismutase [Cu-Zn] OS=Haemonchus contortus GN=SOD PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.613e-31
Identity = 61/113 (53.98%), Postives = 78/113 (69.03%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L+G   V G V  +Q+ +  P  +   + GLTPG HGFH+H+YGD+TNGC S G HFNP N THG PKD+VRH GDLGN+ A A+GVA   I D+ + + G +TVVGR+ VVH
Sbjct:    9 LRGDPGVTGTVWFSQDKESDPCVIKGEIKGLTPGLHGFHVHQYGDSTNGCTSAGPHFNPFNKTHGGPKDDVRHVGDLGNVEAGADGVAHFEIKDHLVKIHGEHTVVGRSLVVH 121          
The following BLAST results are available for this feature:
BLAST of FC920842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODC_DANRE4.580e-3254.39Superoxide dismutase [Cu-Zn] OS=Danio rerio GN=sod... [more]
SODC_SOLCS5.981e-3255.75Superoxide dismutase [Cu-Zn] OS=Solidago canadensi... [more]
SODC_CARCR5.981e-3255.14Superoxide dismutase [Cu-Zn] OS=Caretta caretta PE... [more]
SODC_ZANAE1.020e-3156.25Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_HYLLA1.740e-3154.39Superoxide dismutase [Cu-Zn] OS=Hylobates lar GN=S... [more]
SODC_CHICK1.740e-3155.36Superoxide dismutase [Cu-Zn] OS=Gallus gallus GN=S... [more]
SODC2_BRAJU2.969e-3157.14Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]
SODC_CAPAN3.877e-3154.46Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC2_XENLA5.064e-3154.87Superoxide dismutase [Cu-Zn] B OS=Xenopus laevis G... [more]
SODC_HAECO6.613e-3153.98Superoxide dismutase [Cu-Zn] OS=Haemonchus contort... [more]

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Properties
Property NameValue
Genbank descriptionC32013F11EF RVDevelop1 Citrus clementina cDNA clone C32013F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920842 ID=FC920842; Name=FC920842; organism=Citrus clementina; type=EST; length=666bp
GGGGACCCAGAAACACAAAATCCCATTATCAATTAACATCATCCACCCGC
TCACCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCT
CCTCGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGC
CAAATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCC
TCGCTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCT
CAACTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTG
CTGCCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAA
GGAGTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGT
TCGTGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAAT
ATGGTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCT
AATAACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGA
CCTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTG
TGGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCC
TTTGTGGTTCATGAGC
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