FC920842

Overview
NameFC920842
Unique NameFC920842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920842_ssr180 microsatellite FC920842_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:67..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_HALRO (Superoxide dismutase [Cu-Zn] OS=Halocynthia roretzi PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 8.637e-31
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  342 NVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            +V+G +   Q+  G  TV   V+GL PG HGFH+HEYGD TNGC S+G HFNP    HGAP+D++RH GDLGNI A+++GVA   I D  ISL G ++++GRA VVH
Sbjct:   12 SVKGTLNFKQDAIGSCTVTGEVSGLIPGKHGFHIHEYGDLTNGCTSSGGHFNPFKQIHGAPEDDIRHVGDLGNITADSSGVATVNITDRMISLTGEHSIIGRAVVVH 118          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODE_ONCVO (Extracellular superoxide dismutase [Cu-Zn] OS=Onchocerca volvulus GN=sod-4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.128e-30
Identity = 62/113 (54.87%), Postives = 77/113 (68.14%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGP-TTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L+G + V G++   Q  GG  TT++  V+GLTPG HGFH+H+YGD TNGC S G H+NP   THG P D ++H GDLGNIVA ANGVAE  I    I L GP +V+G + VVH
Sbjct:   51 LRGDAGVSGIIYFQQGSGGSITTISGSVSGLTPGLHGFHVHQYGDQTNGCTSAGDHYNPFGKTHGGPNDRIKHIGDLGNIVAGANGVAEVYINSYDIKLRGPLSVIGHSLVVH 163          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CAEEL (Superoxide dismutase [Cu-Zn] OS=Caenorhabditis elegans GN=sod-1 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.473e-30
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 3
Query:  345 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            V G + +TQ+ +     +   + GLTPG HGFH+H+YGD+TNGCIS G HFNP   THG PK E+RH GDLGN+ A A+GVA+  + D  ++L GPNTVVGR+ VVH
Sbjct:   36 VTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAGPHFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVH 142          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC1_XENLA (Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis GN=sod1-A PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.473e-30
Identity = 61/113 (53.98%), Postives = 76/113 (67.26%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            L G+ +V+GVV   Q+D G  TV  ++ GLT G HGFH+H +GD TNGC+S G HFNP N  HG+PKD  RH GDLGN+ A   GVA+    D QISL G  +++GR  VVHE
Sbjct:    8 LAGSGDVKGVVRFEQQDDGDVTVEGKIEGLTDGNHGFHIHVFGDNTNGCLSAGPHFNPQNKNHGSPKDADRHVGDLGNVTAE-GGVAQFKFTDPQISLKGERSIIGRTAVVHE 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_RAT (Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus GN=Sod1 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 5.598e-30
Identity = 59/114 (51.75%), Postives = 77/114 (67.54%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   V+GV+   Q+  G P  V+ ++TGLT G HGFH+H+YGD T GC + G HFNP++  HG P DE RH GDLGN+ A  +GVA  +I D  ISL G ++++GR  VVHE
Sbjct:    9 LKGDGPVQGVIHFEQKASGEPVVVSGQITGLTEGEHGFHVHQYGDNTQGCTTAGPHFNPHSKKHGGPADEERHVGDLGNVAAGKDGVANVSIEDRVISLSGEHSIIGRTMVVHE 122          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_HORSE (Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 7.312e-30
Identity = 59/114 (51.75%), Postives = 77/114 (67.54%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   V GV+   Q+ +GGP  +   + GLT G HGFH+HE+GD T GC + GAHFNP +  HG PKDE RH GDLGN+ A+ NG A+  + D+ ISL G ++++GR  VVHE
Sbjct:    9 LKGDGPVHGVIHFEQQQEGGPVVLKGFIEGLTKGDHGFHVHEFGDNTQGCTTAGAHFNPLSKKHGGPKDEERHVGDLGNVTADENGKADVDMKDSVISLSGKHSIIGRTMVVHE 122          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC1_DICDI (Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium discoideum GN=sodA PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.312e-30
Identity = 65/113 (57.52%), Postives = 75/113 (66.37%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            +KG   V GVV  TQE+   P TVN  +TGL  G HGFH+H +GDTTNGC+S G HFNP    HGAP DE RH GDLGNIVA+     + TI D  ISL G +T+VGR  VVH
Sbjct:    9 IKG-EKVNGVVKFTQENKDSPVTVNYDITGLEKGEHGFHVHAFGDTTNGCVSAGPHFNPFGKNHGAPSDEDRHVGDLGNIVADGESNTKGTISDKIISLFGEHTIVGRTMVVH 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_RABIT (Superoxide dismutase [Cu-Zn] OS=Oryctolagus cuniculus GN=SOD1 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 9.550e-30
Identity = 60/113 (53.10%), Postives = 73/113 (64.60%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   VE  +   Q+  GP  V  R+TGLT G H FH+H++GD   GC S G HFNP +  HG PKDE RH GDLGN+ A +NGVA+  I D+ ISL G  +V+GR  VVHE
Sbjct:    9 LKGDGPVEATIHFEQKGTGPVVVKGRITGLTEGLHEFHVHQFGDNRQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTAGSNGVADVLIEDSVISLSGDMSVIGRTLVVHE 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_MACMU (Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=SOD1 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.247e-29
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG S V+G +   Q E  GP  V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHE 122          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_MACFU (Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fuscata GN=SOD1 PE=2 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.247e-29
Identity = 60/114 (52.63%), Postives = 76/114 (66.67%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG S V+G +   Q E  GP  V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A  +GVA+ +  D+ ISL G ++++GR  VVHE
Sbjct:    9 LKGDSPVQGTINFEQKESNGPVKVWGSITGLTEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRQHGGPKDEERHVGDLGNVTAGKDGVAKVSFEDSVISLSGDHSIIGRTLVVHE 122          
The following BLAST results are available for this feature:
BLAST of FC920842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODC_HALRO8.637e-3155.14Superoxide dismutase [Cu-Zn] OS=Halocynthia roretz... [more]
SODE_ONCVO1.128e-3054.87Extracellular superoxide dismutase [Cu-Zn] OS=Onch... [more]
SODC_CAEEL1.473e-3055.14Superoxide dismutase [Cu-Zn] OS=Caenorhabditis ele... [more]
SODC1_XENLA1.473e-3053.98Superoxide dismutase [Cu-Zn] A OS=Xenopus laevis G... [more]
SODC_RAT5.598e-3051.75Superoxide dismutase [Cu-Zn] OS=Rattus norvegicus ... [more]
SODC_HORSE7.312e-3051.75Superoxide dismutase [Cu-Zn] OS=Equus caballus GN=... [more]
SODC1_DICDI7.312e-3057.52Superoxide dismutase [Cu-Zn] 1 OS=Dictyostelium di... [more]
SODC_RABIT9.550e-3053.10Superoxide dismutase [Cu-Zn] OS=Oryctolagus cunicu... [more]
SODC_MACMU1.247e-2952.63Superoxide dismutase [Cu-Zn] OS=Macaca mulatta GN=... [more]
SODC_MACFU1.247e-2952.63Superoxide dismutase [Cu-Zn] OS=Macaca fuscata fus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013F11EF RVDevelop1 Citrus clementina cDNA clone C32013F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920842 ID=FC920842; Name=FC920842; organism=Citrus clementina; type=EST; length=666bp
GGGGACCCAGAAACACAAAATCCCATTATCAATTAACATCATCCACCCGC
TCACCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCT
CCTCGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGC
CAAATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCC
TCGCTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCT
CAACTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTG
CTGCCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAA
GGAGTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGT
TCGTGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAAT
ATGGTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCT
AATAACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGA
CCTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTG
TGGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCC
TTTGTGGTTCATGAGC
back to top