FC920842

Overview
NameFC920842
Unique NameFC920842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CEBAP (Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SOD1 PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.379e-28
Identity = 58/114 (50.88%), Postives = 75/114 (65.79%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   V+G +   Q E  GP  V   +TGL  G HGFH+H++GD T GC S G HFNP +  HG P+DE RH GDLGN+ A  +GVA+ +I D+ ISL G ++++GR  VVHE
Sbjct:    9 LKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHE 122          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CALJA (Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.379e-28
Identity = 58/114 (50.88%), Postives = 75/114 (65.79%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   V+G +   Q E  GP  V   +TGL  G HGFH+H++GD T GC S G HFNP +  HG P+DE RH GDLGN+ A  +GVA+ +I D+ ISL G ++++GR  VVHE
Sbjct:    9 LKGDGPVQGTINFEQKESNGPVKVWGSITGLAEGLHGFHVHQFGDNTQGCTSAGPHFNPLSRKHGGPEDEERHVGDLGNVTAGKDGVAKVSIEDSVISLSGDHSIIGRTLVVHE 122          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_BOSMU (Superoxide dismutase [Cu-Zn] OS=Bos mutus grunniens GN=SOD1 PE=2 SV=3)

HSP 1 Score: 126.331 bits (316), Expect = 1.379e-28
Identity = 59/113 (52.21%), Postives = 73/113 (64.60%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   V+G +   +  G    V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD+ ISL G  +++GR  VVHE
Sbjct:    9 LKGDGPVQGTIHF-EAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAVVDIVDSLISLSGEYSIIGRTMVVHE 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CRYGA (Superoxide dismutase [Cu-Zn] OS=Cryptococcus gattii GN=SOD1 PE=2 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 3.072e-28
Identity = 60/114 (52.63%), Postives = 73/114 (64.04%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            LKG S V GV+T TQE +G P TV+  +  L      GFH+HE+GD TNGC S G HFNP+   HGAP D  RH GDLGN+  + NGVA   I D  +SL GP +++GR  VVH
Sbjct:    8 LKGDSPVTGVITFTQEKEGAPVTVSGDIKNLDANAERGFHVHEFGDNTNGCTSAGPHFNPHGKNHGAPSDSERHVGDLGNVKTDGNGVASVNISDKSLSLFGPYSIIGRTIVVH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC6_DICDI (Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyostelium discoideum GN=sodF PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.072e-28
Identity = 61/107 (57.01%), Postives = 77/107 (71.96%), Query Frame = 3
Query:  345 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            VEG VTL+QE +G P  +N  V+GLTPG HG H+HE+GDT+NGCIS G H+NP +  HG+P D  RH GDLGNI A +NGVA  +I D  +SL G  +V+GR  V+H
Sbjct:   13 VEGKVTLSQECEGSPIYINGTVSGLTPGQHGMHVHEFGDTSNGCISAGDHYNPLHREHGSPLDVERHIGDLGNIKALSNGVATISIRDTIMSLFGDISVMGRTMVIH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_BOVIN (Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   V+G +   +  G    V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD  ISL G  +++GR  VVHE
Sbjct:    9 LKGDGPVQGTIHF-EAKGDTVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVTADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHE 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28
Identity = 60/109 (55.05%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  342 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVA-NANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            +V G V   Q+D   P  V+  V GLT G HGFH+HE+GD TNGC S GAHFNP    HG P   VRH GDLGNI A   +GV + +I D+QISL GPN+++GR  VVH
Sbjct:   12 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVH 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_XIPGL (Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN=sod1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.240e-28
Identity = 61/115 (53.04%), Postives = 75/115 (65.22%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVN--VRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            L+G     G V   QE G    V   + + GLTPG HGFH+H +GD TNGCIS G HFNP +  H  PKDE RH GDLGN+ A+ANGVA+  I D +ISL GP +++GR  V+HE
Sbjct:    9 LRGAGETTGTVYFEQE-GNANAVGKGIILKGLTPGEHGFHVHGFGDNTNGCISAGPHFNPASKKHAGPKDEDRHVGDLGNVTADANGVAKIDITD-KISLTGPYSIIGRTMVIHE 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_SHEEP (Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 5.240e-28
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   V+G +   +  G    V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD  ISL G  +++GR  VVHE
Sbjct:    9 LKGDGPVQGTIRF-EAKGDKVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHE 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_PONPY (Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 60/115 (52.17%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  327 LKG-TSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG  S V+G++   Q++  GP  V   + GLT G HGFH+HE+GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ +GVA  +I D+ ISL G + ++GR  VVHE
Sbjct:    9 LKGDNSPVKGIINFEQKERNGPVKVWGSIEGLTEGLHGFHVHEFGDNTVGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVASVSIEDSVISLSGDHCIIGRTLVVHE 123          
The following BLAST results are available for this feature:
BLAST of FC920842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODC_CEBAP1.379e-2850.88Superoxide dismutase [Cu-Zn] OS=Cebus apella GN=SO... [more]
SODC_CALJA1.379e-2850.88Superoxide dismutase [Cu-Zn] OS=Callithrix jacchus... [more]
SODC_BOSMU1.379e-2852.21Superoxide dismutase [Cu-Zn] OS=Bos mutus grunnien... [more]
SODC_CRYGA3.072e-2852.63Superoxide dismutase [Cu-Zn] OS=Cryptococcus gatti... [more]
SODC6_DICDI3.072e-2857.01Probable superoxide dismutase [Cu-Zn] 6 OS=Dictyos... [more]
SODC_BOVIN4.012e-2852.21Superoxide dismutase [Cu-Zn] OS=Bos taurus GN=SOD1... [more]
SODC_BOMMO4.012e-2855.05Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODC_XIPGL5.240e-2853.04Superoxide dismutase [Cu-Zn] OS=Xiphias gladius GN... [more]
SODC_SHEEP5.240e-2852.21Superoxide dismutase [Cu-Zn] OS=Ovis aries GN=SOD1... [more]
SODC_PONPY6.844e-2852.17Superoxide dismutase [Cu-Zn] OS=Pongo pygmaeus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC32013F11EF RVDevelop1 Citrus clementina cDNA clone C32013F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920842 ID=FC920842; Name=FC920842; organism=Citrus clementina; type=EST; length=666bp
GGGGACCCAGAAACACAAAATCCCATTATCAATTAACATCATCCACCCGC
TCACCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCT
CCTCGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGC
CAAATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCC
TCGCTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCT
CAACTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTG
CTGCCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAA
GGAGTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGT
TCGTGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAAT
ATGGTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCT
AATAACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGA
CCTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTG
TGGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCC
TTTGTGGTTCATGAGC
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