FC920842

Overview
NameFC920842
Unique NameFC920842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920842_ssr180 microsatellite FC920842_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:67..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 58/108 (53.70%), Postives = 74/108 (68.52%), Query Frame = 3
Query:  342 NVEGVVTLTQEDGG-PTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            + +G V   QED G P  V   VTGL  G HGFH+HE+GD TNGC+S+G HFNP++  HGAP DE RH GDLGNI A+ +G     I D++I+L G N+++GR  VVH
Sbjct:   12 DAKGTVFFEQEDNGAPVKVTGEVTGLGKGLHGFHVHEFGDNTNGCMSSGPHFNPHSKEHGAPGDENRHLGDLGNIEASGSGPTAVNITDSKITLVGANSIIGRTVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CAPHI (Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SOD1 PE=2 SV=3)

HSP 1 Score: 124.02 bits (310), Expect = 6.844e-28
Identity = 59/113 (52.21%), Postives = 72/113 (63.72%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   V+G +   +  G    V   +TGLT G HGFH+H++GD T GC S G HFNP +  HG PKDE RH GDLGN+ A+ NGVA   IVD  ISL G  +++GR  VVHE
Sbjct:    9 LKGDGPVQGTIHF-EAKGDKVVVTGSITGLTEGDHGFHVHQFGDNTQGCTSAGPHFNPLSKKHGGPKDEERHVGDLGNVKADKNGVAIVDIVDPLISLSGEYSIIGRTMVVHE 120          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_PAETN (Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenuipes GN=SOD1 PE=3 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 1.167e-27
Identity = 58/114 (50.88%), Postives = 75/114 (65.79%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L+G + V G VT  QE +  PTT+   +TG  P    GFH+H +GD TNGC S G HFNP+  THGAP D  RH GDLGN+  +A G A+ +I D+Q+ L GP++V+GR  VVH
Sbjct:    8 LRGDAKVGGTVTFEQESESAPTTITYDLTGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNVKTDAQGNAKGSIQDSQVKLIGPHSVIGRTVVVH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.167e-27
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  342 NVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            + +G V   QE +G P  V   VTGL  G HGFH+HE+GD TNGC+S+G HFNP    HGAP DE RH GDLGNI+AN +G     I D +I+L G N+++GR  VVH
Sbjct:   12 DAKGTVFFEQEGEGCPVKVTGEVTGLAKGQHGFHVHEFGDNTNGCMSSGPHFNPYQKEHGAPTDENRHLGDLGNIIANGDGPTPVNICDCKITLLGANSIIGRTVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC5_DICDI (Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium discoideum GN=sodE PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.396e-27
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            +KG   V+G++   Q D   P  ++  ++GL  G HGFH+HE+GDTTNGC+S GAHFNP    HG+P DE RH GDLGNI +N +  +   I DN I+L G N+++GR+ VVH+
Sbjct:    7 IKG-DGVDGIINFKQNDNKSPVIISGVISGLKEGKHGFHVHEFGDTTNGCLSAGAHFNPFKKEHGSPNDENRHVGDLGNIESNKDKKSIINITDNIITLFGQNSIIGRSIVVHD 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 5.794e-27
Identity = 58/108 (53.70%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  342 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            + +G V   QED   P  V   +TGL  G HGFH+HE+GD TNGC+S+G HFNP N  HGAP DE RH GDLGNI A  +G  +  I D++I+L G N++VGR  VVH
Sbjct:   12 DAKGTVYFEQEDACAPVKVCGEITGLNKGQHGFHVHEFGDNTNGCMSSGPHFNPLNKEHGAPTDENRHLGDLGNIEAPGDGPTKVCINDSKITLFGENSIVGRTVVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CORMI (Superoxide dismutase [Cu-Zn] OS=Cordyceps militaris GN=SOD1 PE=2 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 7.567e-27
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L+G + V G VT  QE +  PTT+   +TG  P    GFH+H +GD TNGC S G HFNP+  THGAP D  RH GDLGNI  +  G A+ ++ D+ + L GP++VVGR  VVH
Sbjct:    8 LRGDAKVAGTVTFEQESESAPTTITWDITGNDPNAERGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDAARHVGDLGNIKTDGQGNAKGSVQDSHVKLIGPHSVVGRTVVVH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_NEUCR (Superoxide dismutase [Cu-Zn] OS=Neurospora crassa GN=sod-1 PE=1 SV=3)

HSP 1 Score: 119.783 bits (299), Expect = 1.291e-26
Identity = 57/114 (50.00%), Postives = 73/114 (64.04%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            ++G SNV+G V   QE +  PTT+   ++G  P    GFH+H +GD TNGC S G HFNP+  THG    EVRH GDLGNI  +A G A+ T+ DN + L GP +V+GR  VVH
Sbjct:    8 VRGDSNVKGTVIFEQESESAPTTITYDISGNDPNAKRGFHIHTFGDNTNGCTSAGPHFNPHGTTHGDRTAEVRHVGDLGNIETDAQGNAKGTVTDNLVKLIGPESVIGRTVVVH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_BOTFU (Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckeliana GN=sod1 PE=3 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 2.875e-26
Identity = 56/114 (49.12%), Postives = 72/114 (63.16%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            ++G S + G VT  Q E+  PTT+   +TG       G H+H++GD TNGC S G HFNP+  THGAP DEVRH GDLGN   +A G A  ++ D+ I L GP +V+GR  VVH
Sbjct:    8 VRGDSKISGTVTFEQSEENSPTTITWNITGNDANAERGMHVHQFGDNTNGCTSAGPHFNPHGQTHGAPTDEVRHVGDLGNFKTDAQGNATGSVQDSHIKLIGPLSVIGRTVVVH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC4_DICDI (Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium discoideum GN=sodD PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.875e-26
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 3
Query:  345 VEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVA-NANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            V G +  +QE +G P  VN  ++GL+ G HGFH+HE+GDT+NGC+S GAHFNP ++ HG P   +RH GDLGNI +  ++ VA   I DN ISL G  +++GR  VVHE
Sbjct:   13 VNGTIIFSQENEGSPVYVNGTISGLSGGLHGFHIHEFGDTSNGCLSAGAHFNPFHVEHGGPNSAIRHVGDLGNITSCPSSKVANVLIQDNVISLFGDLSIIGRTLVVHE 121          
The following BLAST results are available for this feature:
BLAST of FC920842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODC_DROWI6.844e-2853.70Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]
SODC_CAPHI6.844e-2852.21Superoxide dismutase [Cu-Zn] OS=Capra hircus GN=SO... [more]
SODC_PAETN1.167e-2750.88Superoxide dismutase [Cu-Zn] OS=Paecilomyces tenui... [more]
SODC_DROVI1.167e-2753.70Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODC5_DICDI3.396e-2749.12Superoxide dismutase [Cu-Zn] 5 OS=Dictyostelium di... [more]
SODC_CHYAM5.794e-2753.70Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_CORMI7.567e-2750.00Superoxide dismutase [Cu-Zn] OS=Cordyceps militari... [more]
SODC_NEUCR1.291e-2650.00Superoxide dismutase [Cu-Zn] OS=Neurospora crassa ... [more]
SODC_BOTFU2.875e-2649.12Superoxide dismutase [Cu-Zn] OS=Botryotinia fuckel... [more]
SODC4_DICDI2.875e-2651.38Superoxide dismutase [Cu-Zn] 4 OS=Dictyostelium di... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013F11EF RVDevelop1 Citrus clementina cDNA clone C32013F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920842 ID=FC920842; Name=FC920842; organism=Citrus clementina; type=EST; length=666bp
GGGGACCCAGAAACACAAAATCCCATTATCAATTAACATCATCCACCCGC
TCACCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCT
CCTCGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGC
CAAATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCC
TCGCTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCT
CAACTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTG
CTGCCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAA
GGAGTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGT
TCGTGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAAT
ATGGTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCT
AATAACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGA
CCTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTG
TGGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCC
TTTGTGGTTCATGAGC
back to top