FC920842

Overview
NameFC920842
Unique NameFC920842
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length666
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920842_ssr180 microsatellite FC920842_ssr180:180..191. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig5182 contig Ccv1_Contig5182:67..735. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_PIG (Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.366e-26
Identity = 52/113 (46.02%), Postives = 69/113 (61.06%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQEDGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVHE 665
            LKG   V+G +    +      V   + GL  G HGFH+H++GD T GC S G HFNP +  HG PKD+ RH GDLGN+ A  +GVA   I D+ I+L G ++++GR  VVHE
Sbjct:    9 LKGDGPVQGTIYFELKGEKTVLVTGTIKGLAEGDHGFHVHQFGDNTQGCTSAGPHFNPESKKHGGPKDQERHVGDLGNVTAGKDGVATVYIEDSVIALSGDHSIIGRTMVVHE 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.093e-25
Identity = 56/108 (51.85%), Postives = 69/108 (63.89%), Query Frame = 3
Query:  342 NVEGVVTLTQE-DGGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            + +G V   QE +  P  V   VTGL  G HGFH+HE+GD TNGC+S+G HFNP    HGAP DE RH GDLGNI A  +G     I D +I+L G N+++GR  VVH
Sbjct:    4 DAKGTVFFEQESEKCPVKVTGEVTGLAKGLHGFHVHEFGDNTNGCMSSGPHFNPQGKEHGAPTDENRHLGDLGNITATGDGPTAVDICDCKITLFGANSIIGRTVVVH 111          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_YARLI (Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytica GN=SOD1 PE=3 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.427e-25
Identity = 54/114 (47.37%), Postives = 70/114 (61.40%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L+G S V G VT  Q+ + GP TV   + G  P    GFH+HE+GD TNGC S G HFNP    HG P D  RH GDLGN+  ++ GVA+  + D+ + L G N++VGR  V+H
Sbjct:    8 LRGDSKVSGTVTFEQDSESGPVTVTYDIKGNDPNAERGFHVHEFGDNTNGCTSAGPHFNPFKKNHGGPTDSERHVGDLGNVKTDSEGVAKGVLKDSLLKLTGDNSIVGRTVVIH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_KLULA (Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lactis GN=SOD1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25
Identity = 56/114 (49.12%), Postives = 73/114 (64.04%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            LKG S+V G+V   QE +   T ++  +TG       GFH+H +GD TNGC S G HFNP N  HGAP+DE RH GDLGNI  +A G+++ ++ D  I L GP ++VGR  VVH
Sbjct:    8 LKGDSSVSGIVRFEQESEDQQTKISWEITGNDANALRGFHIHTFGDNTNGCTSAGPHFNPFNKNHGAPEDEERHVGDLGNIPTDAQGISKGSLTDKHIKLLGPLSIVGRTVVVH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_EMENI (Superoxide dismutase [Cu-Zn] OS=Emericella nidulans GN=sodA PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25
Identity = 58/114 (50.88%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L+G S V G VT  Q D    TTV+  +TG  P    GFH+H++GD TNGC S G HFNP   THGAP+DEVRH GDLGN   +A G ++ +  D  I L G  +V+GR  VVH
Sbjct:    8 LRGDSKVSGTVTFEQADENSNTTVSWNITGNDPNAERGFHIHQFGDNTNGCTSAGPHFNPFGKTHGAPEDEVRHVGDLGNFKTDAEGNSKGSKTDKLIKLIGAESVLGRTLVVH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.864e-25
Identity = 56/108 (51.85%), Postives = 68/108 (62.96%), Query Frame = 3
Query:  342 NVEGVVTLTQEDG-GPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            +V+G V   Q+D   P  V   V GL  G HGFH+HE+GD TNGC S G HFNP   +HGAP D  RH GDLGNI A+ +G  +  I D  I+L G N++VGR  VVH
Sbjct:   12 DVKGTVHFEQQDAKSPVLVTGEVNGLAKGLHGFHVHEFGDNTNGCTSAGPHFNPYGNSHGAPSDLNRHLGDLGNIEASGDGATKVEISDKLITLFGENSIVGRTIVVH 119          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODE_DIRIM (Extracellular superoxide dismutase [Cu-Zn] OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 52/110 (47.27%), Postives = 69/110 (62.73%), Query Frame = 3
Query:  336 TSNVEGVVTLTQED-GGPTTVNVRVTGLTPGPHGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            +  V G++   Q +    TT+   + GLTPG HGFH+H+YG   NGC S  AH+NP   THG P + ++H GDL NI A A+GVA   I+ N I L GP +V+GR+ VVH
Sbjct:   48 SDTVNGIIYFQQNNRASATTIYGTINGLTPGLHGFHIHQYGIKANGCTSAAAHYNPFEKTHGRPTNNIKHIGDLRNIKAGADGVANVNIISNHIQLSGPLSVIGRSLVVH 157          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_CLAPU (Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea GN=SOD1 PE=3 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L+G + V G V   QE +  PTT+   +TG       GFH+H +GD TNGC S G HFNP+  THGAP DE RH GDLGN+  +  G A+ ++ D  + L GP++V+GR  V+H
Sbjct:    8 LRGDAKVGGTVVFEQESESAPTTITWDITGNDANAKRGFHIHTFGDNTNGCTSAGPHFNPHGKTHGAPTDEARHVGDLGNLETDGQGNAKGSVKDEHVKLIGPHSVIGRTVVIH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_COLGL (Superoxide dismutase [Cu-Zn] OS=Colletotrichum gloeosporioides GN=SOD1 PE=3 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 3.179e-25
Identity = 53/114 (46.49%), Postives = 72/114 (63.16%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQE-DGGPTTVNVRVTGLTPGP-HGFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            ++G S V G +   QE +  PT +   ++G       G H+H +GD TNGC S G HFNP+N THGAP+D  RH GDLGNI  +ANG ++ T+ D+ + L GP +V+GR  VVH
Sbjct:    8 VRGDSKVTGSIVFEQESESAPTKITWDISGNDANAKRGMHIHTFGDNTNGCTSAGPHFNPHNKTHGAPEDSNRHVGDLGNIETDANGNSKGTVTDSHVKLIGPESVIGRTIVVH 121          
BLAST of FC920842 vs. ExPASy Swiss-Prot
Match: SODC_HUMLT (Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.152e-25
Identity = 55/114 (48.25%), Postives = 71/114 (62.28%), Query Frame = 3
Query:  327 LKGTSNVEGVVTLTQ-EDGGPTTVNVRVTGLTPGPH-GFHLHEYGDTTNGCISTGAHFNPNNMTHGAPKDEVRHAGDLGNIVANANGVAEATIVDNQISLDGPNTVVGRAFVVH 662
            L+G S + G VT  Q  +  PTTV+  +TG  P    G H+H++GD TNGC S G H+NP   THGAP DEVRH GDLGNI  +A G A  ++ D  I + G  +++GR  VVH
Sbjct:    8 LRGDSKITGTVTFEQANESAPTTVSWNITGHDPNAERGMHIHQFGDNTNGCTSAGPHYNPFKKTHGAPTDEVRHVGDLGNIKTDAEGNAVGSVQDKLIKVIGAESILGRTIVVH 121          
The following BLAST results are available for this feature:
BLAST of FC920842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
SODC_PIG8.366e-2646.02Superoxide dismutase [Cu-Zn] OS=Sus scrofa GN=SOD1... [more]
SODC_DROBS1.093e-2551.85Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_YARLI1.427e-2547.37Superoxide dismutase [Cu-Zn] OS=Yarrowia lipolytic... [more]
SODC_KLULA1.864e-2549.12Superoxide dismutase [Cu-Zn] OS=Kluyveromyces lact... [more]
SODC_EMENI1.864e-2550.88Superoxide dismutase [Cu-Zn] OS=Emericella nidulan... [more]
SODC_CERCA1.864e-2551.85Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODE_DIRIM2.434e-2547.27Extracellular superoxide dismutase [Cu-Zn] OS=Diro... [more]
SODC_CLAPU2.434e-2546.49Superoxide dismutase [Cu-Zn] OS=Claviceps purpurea... [more]
SODC_COLGL3.179e-2546.49Superoxide dismutase [Cu-Zn] OS=Colletotrichum glo... [more]
SODC_HUMLT4.152e-2548.25Superoxide dismutase [Cu-Zn] OS=Humicola lutea PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32013F11EF RVDevelop1 Citrus clementina cDNA clone C32013F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920842 ID=FC920842; Name=FC920842; organism=Citrus clementina; type=EST; length=666bp
GGGGACCCAGAAACACAAAATCCCATTATCAATTAACATCATCCACCCGC
TCACCCTCACGCTCAATGCAAGCCGCAATAGCAGCCATGGCTCACGTTCT
CCTCGTAGCAGCACCGCCCTCTTCATCTCACACACTCCTTGCCACATTGC
CAAATCCTAGCAGTGTCACGCGCTCTTCCTCTTCTTCTTCTCATTCTCCC
TCGCTTCACTCTGCATTCCACGGCGTCTCCCTCAAATTCCCCTCTCGTCT
CAACTTATCTCTCGCCGCCGTGGCCTCCAAGAAGCCGTTGACTGTCGTTG
CTGCCGCCAAGAAAGCGGTGGCTGTTCTTAAAGGCACTTCCAATGTTGAA
GGAGTTGTTACGTTGACCCAAGAAGATGGCGGTCCTACGACTGTCAATGT
TCGTGTCACTGGTCTTACTCCTGGGCCTCACGGGTTCCACCTACACGAAT
ATGGTGATACGACAAATGGGTGTATATCAACAGGAGCACATTTCAATCCT
AATAACATGACACACGGTGCTCCTAAAGATGAAGTGCGACACGCGGGTGA
CCTGGGAAACATAGTTGCTAACGCCAATGGTGTGGCAGAAGCAACAATTG
TGGACAACCAGATATCACTGGATGGTCCAAACACAGTAGTTGGAAGAGCC
TTTGTGGTTCATGAGC
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