FC920843

Overview
NameFC920843
Unique NameFC920843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15172 contig Ccv1_Contig15172:211..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_RICBR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia bellii (strain RML369-C) GN=pdhB PE=3 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 4.159e-68
Identity = 122/182 (67.03%), Postives = 154/182 (84.62%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVS 556
            Q+ VREAL  A+ EEM  D KVF+MGEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA+DHI+NSAAK++YMS GQ+  PIVFR PNGAA+ V AQHSQ YAA Y+ +PGLKV++PYS+ED +GL+  AIRD +PV+FL NE+LYG SF +S
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAMDHIVNSAAKTHYMSGGQVRCPIVFRGPNGAASRVAAQHSQNYAACYSYIPGLKVVAPYSAEDHKGLMITAIRDDNPVIFLENEILYGHSFDIS 183          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_RICFE (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia felis GN=pdhB PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.521e-67
Identity = 122/181 (67.40%), Postives = 150/181 (82.87%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPV 553
            Q+ VREAL  A+ EEM  D KVF+MGEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA DHI+NSAAK++YMS GQ   PIVFR PNGAA+ V AQHSQ Y A Y+ VPGLKV++PYS+ED +GL+  AIRD +PV+FL NE+LYG SF V
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVMGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQAKCPIVFRGPNGAASRVAAQHSQNYTACYSHVPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDV 182          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_RICCN (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia conorii GN=pdhB PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.521e-67
Identity = 121/181 (66.85%), Postives = 151/181 (83.43%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPV 553
            Q+ VREAL  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++GP+RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA DHI+NSAAK++YMS GQ+  PIVFR PNGAA+ V AQHSQ Y A Y+ +PGLKV++PYS+ED +GL+  AIRD +PVVFL NE+LYG SF V
Sbjct:    2 QITVREALRDAMQEEMIRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGPKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVVFLENEILYGHSFDV 182          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 3.521e-67
Identity = 123/194 (63.40%), Postives = 151/194 (77.84%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPPI 592
            Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFR PNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV L NEL+YG  F    E     F  PI
Sbjct:   32 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPI 225          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_HUMAN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Homo sapiens GN=PDHB PE=1 SV=3)

HSP 1 Score: 254.218 bits (648), Expect = 3.521e-67
Identity = 123/194 (63.40%), Postives = 151/194 (77.84%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPPI 592
            Q+ VR+A+N  +DEE+  D KVFL+GEEV +Y GAYK+S+GL +KYG +R++DTPI+E GF GI VGAA  GL+P+ EFMTFNFSMQAID +INSAAK+ YMS G   VPIVFR PNGA+AGV AQHSQC+AAWY   PGLKV+SP++SEDA+GL+K+AIRD +PVV L NEL+YG  F    E     F  PI
Sbjct:   32 QVTVRDAINQGMDEELERDEKVFLLGEEVAQYDGAYKVSRGLWKKYGDKRIIDTPISEMGFAGIAVGAAMAGLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFRGPNGASAGVAAQHSQCFAAWYGHCPGLKVVSPWNSEDAKGLIKSAIRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPI 225          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_ZYMMO (Pyruvate dehydrogenase E1 component subunit beta OS=Zymomonas mobilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 250.751 bits (639), Expect = 3.893e-66
Identity = 124/185 (67.03%), Postives = 150/185 (81.08%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAED 565
            Q  +REAL  A+ EEM  D +VF+MGEEV EYQGAYK+++GLL+++G  RV+DTPI+E GF+GIGVGAA  GL+PV+EFMT NFSMQAIDHIINSAAK++YMS GQ+  PIVFR PNGAA  VGAQH+Q +  WYA+VPGL VL+PY + DA+GLLKAAIR  DPVVFL  ELLYG++F V   D
Sbjct:  138 QQTLREALRDAMAEEMRRDDRVFVMGEEVAEYQGAYKVTQGLLQEFGARRVVDTPISEYGFSGIGVGAAMEGLRPVIEFMTMNFSMQAIDHIINSAAKTHYMSGGQVRCPIVFRGPNGAAPRVGAQHTQNFGPWYAAVPGLVVLAPYDAIDAKGLLKAAIRSDDPVVFLECELLYGKTFDVPKMD 322          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_RICTY (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia typhi GN=pdhB PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 3.893e-66
Identity = 119/181 (65.75%), Postives = 150/181 (82.87%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPV 553
            Q+ VREAL  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++G +RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA DHI+NSAAK++YMS GQ+  PIVFR PNGAA+ V AQHSQ Y A Y+ +PGLKV++PYS+ED +GL+  AIRD +PV+FL NE+LYG SF V
Sbjct:    2 QITVREALRDAMQEEMLRDDKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDV 182          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_RICPR (Pyruvate dehydrogenase E1 component subunit beta OS=Rickettsia prowazekii GN=pdhB PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 3.893e-66
Identity = 119/181 (65.75%), Postives = 150/181 (82.87%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPV 553
            Q+ VREAL  A+ EEM  D KVF++GEEV EYQGAYK+++GLLE++G +RV+DTPITE GF G+ VGAA+ GL+P+VEFMTFNF+MQA DHI+NSAAK++YMS GQ+  PIVFR PNGAA+ V AQHSQ Y A Y+ +PGLKV++PYS+ED +GL+  AIRD +PV+FL NE+LYG SF V
Sbjct:    2 QITVREALRDAMQEEMLRDEKVFVIGEEVAEYQGAYKVTQGLLEQFGSKRVIDTPITEYGFAGLAVGAAFAGLRPIVEFMTFNFAMQAFDHIVNSAAKTHYMSGGQVKCPIVFRGPNGAASRVAAQHSQNYTACYSHIPGLKVVAPYSAEDHKGLMLTAIRDDNPVIFLENEILYGHSFDV 182          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_ASCSU (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 3.084e-63
Identity = 119/190 (62.63%), Postives = 142/190 (74.74%), Query Frame = 2
Query:   20 VREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPP 589
            VR+ALN+ALDEE+  D +VFL+GEEV +Y GAYKISKGL +KYG  R+ DTPITE    G+ VGAA  GL+P+ EFM+ NFSMQ IDHIINSAAK++YMS G+  VPIVFR  NGAA GV  QHSQ + AW+   PG+KV+ PY  EDARGLLKAA+RD +PV+ L NE+LYG  FPVS E     F  P
Sbjct:   36 VRDALNAALDEEIKRDDRVFLIGEEVAQYDGAYKISKGLWKKYGDGRIWDTPITEMAIAGLSVGAAMNGLRPICEFMSMNFSMQGIDHIINSAAKAHYMSAGRFHVPIVFRGANGAAVGVAQQHSQDFTAWFMHCPGVKVVVPYDCEDARGLLKAAVRDDNPVICLENEILYGMKFPVSPEAQSPDFVLP 225          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.001e-42
Identity = 87/175 (49.71%), Postives = 122/175 (69.71%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            ++ + EAL  A+DEEM+ D +VF++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  GLKPVVE M  +F + A + I N+A   +Y S G  S+P+V R P G    + A+HSQ   A++ +VPGLK+++  +  +A+GLLKAAIRD +PV+FL + LLY
Sbjct:    4 KLFMYEALREAIDEEMARDKRVFVLGEDVGHYGGSYKVTKQLHTKYGDLRVLDTPIAENSFTGMAIGAAMTGLKPVVEGMNLSFLLLAFNQISNNAGMLHYTSGGNWSIPLVIRGPGGIGKQLSAEHSQRIEAYFQAVPGLKIVACSTPYNAKGLLKAAIRDNNPVLFLEHVLLY 178          
The following BLAST results are available for this feature:
BLAST of FC920843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_RICBR4.159e-6867.03Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICFE3.521e-6767.40Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICCN3.521e-6766.85Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PONAB3.521e-6763.40Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_HUMAN3.521e-6763.40Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ZYMMO3.893e-6667.03Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICTY3.893e-6665.75Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_RICPR3.893e-6665.75Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ASCSU3.084e-6362.63Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_CYAME3.001e-4249.71Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC32013F12EF RVDevelop1 Citrus clementina cDNA clone C32013F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920843 ID=FC920843; Name=FC920843; organism=Citrus clementina; type=EST; length=594bp
CCCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATG
AGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGG
GAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGG
CCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGA
TTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCATG
ACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCTGC
AAAATCAAATTACATGTCTCCTGGCCAAATATCGGTTCCTATCGTCTTCA
GAAGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAATGT
TATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCATA
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTTGAAATGAGCTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGATCTTGATTCCAGTTTTTGCCCTCCAATTGG
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