FC920843

Overview
NameFC920843
Unique NameFC920843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15172 contig Ccv1_Contig15172:211..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.686e-42
Identity = 79/177 (44.63%), Postives = 121/177 (68.36%), Query Frame = 2
Query:    5 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            + + ++ EALN  + EE+  DPKVF++GE++G Y G+YK++KGL EKYG  R+LDTPI E  FTGI +GAA  GL+P++E M   F + A + I N+A   +Y S G  + P+V R P G    +GA+HSQ   +++ SVPGL++++  +  +A+GL+K+AIR  +P++F  + LLY
Sbjct:    1 MSEKLLYEALNEGIHEEIERDPKVFVIGEDIGHYGGSYKVTKGLFEKYGNLRILDTPIAENSFTGIAIGAAMTGLRPIIEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTTPLVVRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSQNPIIFFEHVLLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 6.686e-42
Identity = 83/175 (47.43%), Postives = 119/175 (68.00%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            ++++ EAL  ALDEEM  DP V +MGE+VG Y G+YK++KG  EKYG  R+LDTPI E  FTG+ +GAA  GL+P+VE M   F + A + I N+A   +Y S G   +PIV R P G    +GA+HSQ   +++ SVPGL++++  +  + +GLLK+AIR+ +PV+F  + LLY
Sbjct:    3 EVLLFEALRDALDEEMQRDPSVLVMGEDVGHYGGSYKVTKGFHEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPIVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFKIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNGKGLLKSAIRNDNPVIFFEHVLLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 7.393e-41
Identity = 83/187 (44.39%), Postives = 124/187 (66.31%), Query Frame = 2
Query:    5 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAED 565
            + ++ + +AL +A DEEM+ DP V ++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  GL+P+VE M  +F + A + I N+A    Y S G  ++P+V R P G    +GA+HSQ   A++ ++PGLK+++  +  +A+GLLK+AIRD +PVVF  + LLY     +  E+
Sbjct:    1 MSKIFMFDALRAATDEEMAKDPTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPQEE 187          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.261e-40
Identity = 81/177 (45.76%), Postives = 118/177 (66.67%), Query Frame = 2
Query:    5 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            + +M++ EAL   L EEM  DPKV +MGE+VG Y G+YK++KG  EKYG  R+LDTPI E  FTG+ +GAA  GL+PVVE M   F + A + I N+A   +Y S    ++PIV R P G    +GA+HSQ   +++ SVPGL++++  +  +A+GL+K++IR  +PV+   + LLY
Sbjct:    1 MSEMLLFEALREGLQEEMDRDPKVLVMGEDVGHYGGSYKVTKGFAEKYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGANFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQLVACSTPINAKGLIKSSIRSENPVILFEHVLLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 1.647e-40
Identity = 80/185 (43.24%), Postives = 122/185 (65.95%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAED 565
            ++++ EAL   L EEM  DP+V +MGE+VG Y G+YK++KG  E+YG  R+LDTPI E  FTG+ +GAA  GL+PVVE M   F + A + I N+A   +Y S G  ++PIV R P G    +GA+HSQ   +++ SVPGL++++  +  +A+GL+K+AIR  +P++   + LLY     ++ E+
Sbjct:    3 EVLLFEALRQGLQEEMDRDPRVMVMGEDVGHYGGSYKVTKGFAERYGDLRLLDTPIAENSFTGMAIGAAMTGLRPVVEGMNMGFLLLAFNQIANNAGMLHYTSGGNFTIPIVIRGPGGVGRQLGAEHSQRLESYFQSVPGLQMVACSTPYNAKGLIKSAIRSDNPIILFEHVLLYNLKEDLAEEE 187          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.647e-40
Identity = 81/175 (46.29%), Postives = 117/175 (66.86%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            ++++ +AL  A DEEM  D  VF++GE+VG Y G+YK++K L  KYG  RVLDTPI E  F G+ +GAA  GL+P+VE M  +F + A + I N+A    Y S G   +PIV R P G    +GA+HSQ   A++ ++PGLK+++  +  +A+GLLK+AIRD +PV+F  + LLY
Sbjct:    3 EVLMFDALREATDEEMQNDSSVFILGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFMGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFQIPIVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVIFFEHVLLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.821e-39
Identity = 81/177 (45.76%), Postives = 119/177 (67.23%), Query Frame = 2
Query:    5 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            + ++ + +AL +A DEEM  D  V ++GE+VG Y G+YK++K L  KYG  RVLDTPI E  FTG+ +GAA  GL+P+VE M  +F + A + I N+A    Y S G  ++P+V R P G    +GA+HSQ   A++ ++PGLK+++  +  +A+GLLK+AIRD +PVVF  + LLY
Sbjct:    1 MSKVFMFDALRAATDEEMEKDLTVCVIGEDVGHYGGSYKVTKDLHSKYGDLRVLDTPIAENSFTGMAIGAAITGLRPIVEGMNMSFLLLAFNQISNNAGMLRYTSGGNFTLPLVIRGPGGVGRQLGAEHSQRLEAYFQAIPGLKIVACSTPYNAKGLLKSAIRDNNPVVFFEHVLLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODBB_THET8 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.821e-39
Identity = 80/174 (45.98%), Postives = 114/174 (65.52%), Query Frame = 2
Query:   14 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA   G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G     G  HSQ   A +    GLKV++  +  DA+GLLKAAIRD DPVVFL  + LY
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODBB_THET2 (2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.821e-39
Identity = 80/174 (45.98%), Postives = 114/174 (65.52%), Query Frame = 2
Query:   14 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            M + +ALN ALDEEM+ DP+V ++GE+VG+  G + +++GLL+KYGP+RV+DTP++EA   G  +G A +GL+PV E    ++     D +++  AK  Y S GQ + P+V R P+G     G  HSQ   A +    GLKV++  +  DA+GLLKAAIRD DPVVFL  + LY
Sbjct:    4 MTMVQALNRALDEEMAKDPRVVVLGEDVGKRGGVFLVTEGLLQKYGPDRVMDTPLSEAAIVGAALGMAAHGLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVRMPSGGGVRGGHHHSQSPEAHFVHTAGLKVVAVSTPYDAKGLLKAAIRDEDPVVFLEPKRLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODBB_BACSU (2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis GN=bfmBAB PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.541e-38
Identity = 77/170 (45.29%), Postives = 110/170 (64.71%), Query Frame = 2
Query:   26 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            +A+N A+ EEM  D +VF++GE+VG   G +K + GL E++G ERV+DTP+ E+   G+G+GAA YG++P+ E    +F M A++ II+ AAK  Y S    S PIV R P G        HSQ   A +A+ PGLK++ P +  DA+GLLKAA+RD DPV+F  ++  Y
Sbjct:    8 DAINLAMKEEMERDSRVFVLGEDVGRKGGVFKATAGLYEQFGEERVMDTPLAESAIAGVGIGAAMYGMRPIAEMQFADFIMPAVNQIISEAAKIRYRSNNDWSCPIVVRAPYGGGVHGALYHSQSVEAIFANQPGLKIVMPSTPYDAKGLLKAAVRDEDPVLFFEHKRAY 177          
The following BLAST results are available for this feature:
BLAST of FC920843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CHAVU6.686e-4244.63Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL6.686e-4247.43Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE7.393e-4144.39Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAPU1.261e-4045.76Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR1.647e-4043.24Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL1.647e-4046.29Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU1.821e-3945.76Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_THET81.821e-3945.982-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_THET21.821e-3945.982-oxoisovalerate dehydrogenase subunit beta OS=The... [more]
ODBB_BACSU1.541e-3845.292-oxoisovalerate dehydrogenase subunit beta OS=Bac... [more]

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Properties
Property NameValue
Genbank descriptionC32013F12EF RVDevelop1 Citrus clementina cDNA clone C32013F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920843 ID=FC920843; Name=FC920843; organism=Citrus clementina; type=EST; length=594bp
CCCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATG
AGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGG
GAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGG
CCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGA
TTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCATG
ACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCTGC
AAAATCAAATTACATGTCTCCTGGCCAAATATCGGTTCCTATCGTCTTCA
GAAGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAATGT
TATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCATA
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTTGAAATGAGCTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGATCTTGATTCCAGTTTTTGCCCTCCAATTGG
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