FC920843

Overview
NameFC920843
Unique NameFC920843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15172 contig Ccv1_Contig15172:211..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_CYACA (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidium caldarium GN=pdhB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 4.485e-38
Identity = 77/177 (43.50%), Postives = 116/177 (65.54%), Query Frame = 2
Query:    5 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            +  M + EAL +A+DEEM  D  VF++GE+VG Y G+YK++K L  KYG  RVLD PI E  FTG+ +GAA  GL+P+VE M   F + A + I N+ +   Y S G  ++P+V R P G    + A+HSQ   + + S+PGL++++  ++ +A+GLLK+AI +  P++FL + LLY
Sbjct:    1 MSMMFLYEALRAAIDEEMGKDSNVFIVGEDVGHYGGSYKVTKDLHVKYGDLRVLDAPIAENSFTGMAIGAAMTGLRPIVEGMNMGFMLLAFNQISNNLSMLQYTSGGNFNIPVVIRGPGGIGKQLAAEHSQRLESCFQSIPGLQIVACSTAYNAKGLLKSAIIEKKPILFLEHVLLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.105e-36
Identity = 81/189 (42.86%), Postives = 116/189 (61.38%), Query Frame = 2
Query:   26 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESFPVSAEDLDSSFCPPI 592
            EALN A+DEEM+ + KV L+GE++G Y G+YK+++ L  KYG  RV+DTPI E  F G  +GAA  GL  VVE M   F + A   I N+    +  S G   +PIV R P G    +GA+HSQ    ++ SVPGL++++  +  +A+GLLK+AIR  +P+ FL + LLY     + AE  D+ +  P+
Sbjct:    8 EALNMAIDEEMARNDKVALLGEDIGHYGGSYKVTQNLYAKYGEHRVIDTPIAENSFVGAAIGAAMTGLVTVVEGMNMGFILLAFSQISNNMGMLSATSGGHYHIPIVLRGPGGVGKQLGAEHSQRLECYFQSVPGLQIVACSTPYNAKGLLKSAIRSKNPIFFLEHVLLYN----LKAEVPDNDYVLPL 192          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.160e-36
Identity = 77/170 (45.29%), Postives = 109/170 (64.12%), Query Frame = 2
Query:   26 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            EAL  A+DEEM  + +V L+GE++G Y G+YK+++GL  KYG  RV+DTPI E  F G  VGAA  GL PVVE M   F + A   I N+       S G   VP+V R P G    +GA+HSQ   +++ SVPGL++++  +  +A+GLLK+AIR  +P++F+ + LLY
Sbjct:    8 EALQKAIDEEMEREKRVVLIGEDIGHYGGSYKVTQGLYGKYGKHRVIDTPIAEYSFVGAAVGAAATGLIPVVEGMNMAFILLAYSQISNNMGMLCATSGGHFQVPMVLRGPGGIGKQLGAEHSQRLESYFQSVPGLQIVTCSTPYNAKGLLKSAIRSKNPILFIEHVLLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ACOB_RALEH (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=acoB PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 3.326e-33
Identity = 74/187 (39.57%), Postives = 112/187 (59.89%), Query Frame = 2
Query:    8 KQMMVREALNSALDEEMSADPKVFLMGEEV-------GE---YQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYG 538
            +++ ++ A+N A+D+EM+ DP V ++GE++       GE   + G   ++KGL  K+G +R+LDTP++E+ + G  +GAA  G++P+ E M  +F     D I N AAK  YM  G+   P+V R   GA     AQHSQ     +  +PGLKV+ P +  D +GLL  AIRD DPV+F  ++ LYG
Sbjct:    3 RKLSIKLAINEAIDQEMTRDPSVIMLGEDIVGGAGADGEKDAWGGVLGVTKGLYAKHG-DRLLDTPLSESAYVGAAIGAAACGMRPIAELMFIDFMGVCFDQIFNQAAKFRYMFGGKAETPVVIRAMVGAGFRAAAQHSQMLTPLFTHIPGLKVVCPSTPYDTKGLLIQAIRDNDPVIFCEHKNLYG 188          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_ACHLA (Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 9.677e-33
Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 2
Query:   26 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            EA+N A+D+ M  D  + + GE+ G   G ++++ GL +KYG  RV DTPI E+   G  VG A  GLKP+ E     F       ++  AA+    S GQ +VP+V R P+G        HS+     + S+PGLKV++P +  DA+GLL AAI DPDPVVFL  + +Y
Sbjct:    8 EAINQAIDQAMEKDESIVVFGEDAGFEGGVFRVTAGLQKKYGETRVFDTPIAESAIVGSAVGMAINGLKPIAEIQFDGFIFPGYTDLVTHAARMRNRSRGQFTVPMVLRLPHGGGIRALEHHSEALEVLFGSIPGLKVVTPSTPYDAKGLLLAAINDPDPVVFLEPKRIY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_MYCPN (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma pneumoniae GN=pdhB PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.113e-31
Identity = 73/170 (42.94%), Postives = 94/170 (55.29%), Query Frame = 2
Query:   26 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            EAL +A+D  +  DP V L G++ G   G ++ +KGL +KYG ERV D PI EA   GIGVGAA  GLKP+VE     FS  A+  I   AA+    S G  + PI+ R P G        HS+   A Y  + GLK + P +  D +GL  AA+  PDPVVF   + LY
Sbjct:   11 EALGNAMDLALERDPNVVLYGQDAGFEGGVFRATKGLQKKYGEERVWDCPIAEAAMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFTHAARIRNRSRGVYTCPIIVRMPMGGGIKALEHHSETLEAIYGQIAGLKTVMPSNPYDTKGLFLAAVESPDPVVFFEPKKLY 180          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODBB_PSEAE (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa GN=bkdA2 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.066e-31
Identity = 72/181 (39.78%), Postives = 102/181 (56.35%), Query Frame = 2
Query:    5 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESF 547
            V  M + +AL SA+D  +  D  V + G++VG + G ++ ++GL +KYG  RV D PI+E+G  G  VG   YGL+PVVE    ++   A D +I+ AA+  Y S G   VP+  R P G     G  HSQ   A +  V GL+ + P +  DA+GLL A I + DPV+FL  + LY   F
Sbjct:   14 VTSMTMIQALRSAMDIMLERDDDVVVFGQDVGYFGGVFRCTEGLQKKYGTSRVFDAPISESGIIGAAVGMGAYGLRPVVEIQFADYVYPASDQLISEAARLRYRSAGDFIVPMTVRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIACIENDDPVIFLEPKRLYNGPF 194          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_MYCGE (Pyruvate dehydrogenase E1 component subunit beta OS=Mycoplasma genitalium GN=pdhB PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.545e-30
Identity = 73/170 (42.94%), Postives = 94/170 (55.29%), Query Frame = 2
Query:   26 EALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            EALN+A+D  +  D  V L G++ G   G ++ +KGL +KYG ERV D PI E    GIGVGAA  GLKP+VE     FS  A+  I   AA+    S G  + P+V R P G        HS+   A YA + GLK + P +  D +GL  AAI  PDPV+F   + LY
Sbjct:   10 EALNNAMDLALERDQNVVLYGQDAGFEGGVFRATKGLQQKYGSERVWDCPIAENSMAGIGVGAAIGGLKPIVEIQFSGFSFPAMFQIFVHAARIRNRSRGVYTAPLVVRMPMGGGIKALEHHSETLEAIYAQIAGLKTVMPSNPYDTKGLFLAAIESPDPVIFFEPKKLY 179          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_BACST (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus stearothermophilus GN=pdhB PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.495e-30
Identity = 68/175 (38.86%), Postives = 98/175 (56.00%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+  AL  E+  DP V + GE+VG   G ++ ++GL  ++G +RV DTP+ E+G  G+ +G A  G +PV E   F F  + +D I    A+  Y + G+  +PI  R P G        HS       A  PGLKV+ P +  DA+GLL +AIRD DPV+FL +  LY
Sbjct:    3 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISAIRDNDPVIFLEHLKLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODBB_PSEPU (2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas putida GN=bkdA2 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.871e-30
Identity = 69/178 (38.76%), Postives = 99/178 (55.62%), Query Frame = 2
Query:   14 MMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLYGESF 547
            M + +AL SA+D  +  D  V + G++VG + G ++ ++GL  KYG  RV D PI+E+G  G  VG   YGL+PVVE    ++   A D I++  A+  Y S G+   P+  R P G     G  HSQ   A +  V GL+ + P +  DA+GLL A+I   DPV+FL  + LY   F
Sbjct:    6 MTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYNGPF 183          
The following BLAST results are available for this feature:
BLAST of FC920843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_CYACA4.485e-3843.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI1.105e-3642.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT7.160e-3645.29Pyruvate dehydrogenase E1 component subunit beta O... [more]
ACOB_RALEH3.326e-3339.57Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_ACHLA9.677e-3341.18Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MYCPN3.113e-3142.94Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEAE4.066e-3139.782-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]
ODPB_MYCGE1.545e-3042.94Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_BACST4.495e-3038.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_PSEPU5.871e-3038.762-oxoisovalerate dehydrogenase subunit beta OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionC32013F12EF RVDevelop1 Citrus clementina cDNA clone C32013F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920843 ID=FC920843; Name=FC920843; organism=Citrus clementina; type=EST; length=594bp
CCCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATG
AGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGG
GAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGG
CCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGA
TTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCATG
ACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCTGC
AAAATCAAATTACATGTCTCCTGGCCAAATATCGGTTCCTATCGTCTTCA
GAAGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAATGT
TATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCATA
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTTGAAATGAGCTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGATCTTGATTCCAGTTTTTGCCCTCCAATTGG
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