FC920843

Overview
NameFC920843
Unique NameFC920843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15172 contig Ccv1_Contig15172:211..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ACOB_BACSU (Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta OS=Bacillus subtilis GN=acoB PE=3 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 5.871e-30
Identity = 73/182 (40.11%), Postives = 100/182 (54.95%), Query Frame = 2
Query:   26 EALNSALDEEMSADPKVFLMGEEVG------------EYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            +A+N A+   M  D  V L+GE+V              + G   ++KGL++++G  RVLDTPI+EAG+ G  + AA  GL+P+ E M  +F     D +IN  AK  YM  G+  VPI  R   GA     AQHSQ     + S+PGLK + P +  DA+GLL AAI D DPV F  ++  Y
Sbjct:    9 DAINEAMKLAMRKDENVLLIGEDVAGGAAVDHLQDDEAWGGVLGVTKGLVQEFGRTRVLDTPISEAGYMGAAMAAASTGLRPIAELMFNDFIGTCFDQVINQGAKFRYMFGGKAQVPITVRTTYGAGFRAAAQHSQSLYGLFTSIPGLKTVVPSNPYDAKGLLLAAIEDNDPVFFFEDKTSY 190          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_LEIXX (Pyruvate dehydrogenase E1 component subunit beta OS=Leifsonia xyli subsp. xyli GN=pdhB PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.806e-29
Identity = 61/170 (35.88%), Postives = 98/170 (57.65%), Query Frame = 2
Query:    5 VKQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVF 514
            V+ + + +ALN+ L + + ADPKV ++GE+VG   G +++++GL  ++G  RV+DTP+ EAG  G  +G A  G +PVVE     F     D I    AK      G +S+P+V R P+G   G    H +   A++A   GL++++P +  DA  +++ AI   DPV+F
Sbjct:   14 VQSLPMVKALNAGLRQALVADPKVLILGEDVGPLGGVFRVTEGLQSEFGASRVVDTPLAEAGIVGTAIGLAMRGYRPVVEIQFNGFVFPGFDQITTQLAKMANRHSGAVSMPVVIRIPHGGHIGAVEHHQEAPEAYFAHTAGLRIVAPSTPHDAYWMIQEAIASDDPVIF 183          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODBB_DICDI (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.970e-29
Identity = 67/177 (37.85%), Postives = 101/177 (57.06%), Query Frame = 2
Query:    8 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISV-PIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            ++M + +A+N+ +D  M  D K  + GE+VG + G ++ + GL +KYG  RV +TP+ E G  G  +G A  G  P+ E    ++   A D I+N AAK  Y S GQ     +  R P GA    G  HSQ   +++   PGLKV+ P +  +A+GLL A+IR+ DPV+F   +L+Y
Sbjct:   47 QKMNLFQAINNGMDIAMQKDSKAVVFGEDVG-FGGVFRCTVGLRDKYGASRVFNTPLCEQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSPYGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMY 222          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_BACSU (Pyruvate dehydrogenase E1 component subunit beta OS=Bacillus subtilis GN=pdhB PE=3 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 1.889e-28
Identity = 64/175 (36.57%), Postives = 98/175 (56.00%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+  AL  E+  D  V + GE+VG   G ++ ++GL +++G +RV DTP+ E+G  G+ +G    G +PV+E   F F  + +D +    A+  Y S G+ + P+  R P G        H+       A  PG+KV+ P +  DA+GLL +AIRD DPVVFL +  LY
Sbjct:    3 QMTMIQAITDALRTELKNDENVLVFGEDVGVNGGVFRATEGLQKEFGEDRVFDTPLAESGIGGLALGLGLNGFRPVMEIQFFGFVYEVMDSVSGQMARMRYRSGGRWTSPVTIRSPFGGGVHTPELHADSLEGLVAQQPGIKVVIPSTPYDAKGLLISAIRDNDPVVFLEHMKLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_STAAW (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MW2) GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 63/175 (36.00%), Postives = 97/175 (55.43%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR  DPVV+L +  LY
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_STAAU (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus GN=pdhB PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 63/175 (36.00%), Postives = 97/175 (55.43%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR  DPVV+L +  LY
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_STAAS (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MSSA476) GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 63/175 (36.00%), Postives = 97/175 (55.43%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR  DPVV+L +  LY
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_STAAR (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain MRSA252) GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 63/175 (36.00%), Postives = 97/175 (55.43%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR  DPVV+L +  LY
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_STAAN (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain N315) GN=pdhB PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 63/175 (36.00%), Postives = 97/175 (55.43%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR  DPVV+L +  LY
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_STAAM (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=pdhB PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.224e-27
Identity = 63/175 (36.00%), Postives = 97/175 (55.43%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR  DPVV+L +  LY
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRSPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLY 177          
The following BLAST results are available for this feature:
BLAST of FC920843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ACOB_BACSU5.871e-3040.11Acetoin:2,6-dichlorophenolindophenol oxidoreductas... [more]
ODPB_LEIXX3.806e-2935.88Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_DICDI4.970e-2937.852-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODPB_BACSU1.889e-2836.57Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAW1.224e-2736.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAU1.224e-2736.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAS1.224e-2736.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAR1.224e-2736.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAN1.224e-2736.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAAM1.224e-2736.00Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionC32013F12EF RVDevelop1 Citrus clementina cDNA clone C32013F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920843 ID=FC920843; Name=FC920843; organism=Citrus clementina; type=EST; length=594bp
CCCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATG
AGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGG
GAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGG
CCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGA
TTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCATG
ACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCTGC
AAAATCAAATTACATGTCTCCTGGCCAAATATCGGTTCCTATCGTCTTCA
GAAGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAATGT
TATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCATA
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTTGAAATGAGCTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGATCTTGATTCCAGTTTTTGCCCTCCAATTGG
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