FC920843

Overview
NameFC920843
Unique NameFC920843
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length594
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15172 contig Ccv1_Contig15172:211..804. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_STAAC (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus aureus (strain COL) GN=pdhB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.599e-27
Identity = 63/175 (36.00%), Postives = 97/175 (55.43%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D I    A++ + S G  + P+  R P G        H+       A  PGLKV+ P    DA+GLL ++IR  DPVV+L +  LY
Sbjct:    3 QMTMVQAINDALKTELKNDQDVLIFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLAMGLAVEGFRPVMEVQFLGFVFEVFDAIAGQIARTRFRSGGTKTAPVTIRGPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIRSNDPVVYLEHMKLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_STAES (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 12228) GN=pdhB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.562e-27
Identity = 61/175 (34.86%), Postives = 96/175 (54.86%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D +    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL ++I+  DPVV+L +  LY
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODPB_STAEQ (Pyruvate dehydrogenase E1 component subunit beta OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=pdhB PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.562e-27
Identity = 61/175 (34.86%), Postives = 96/175 (54.86%), Query Frame = 2
Query:   11 QMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISVPIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            QM + +A+N AL  E+  D  V + GE+VG   G +++++GL +++G +RV DTP+ E+G  G+ +G A  G +PV+E     F  +  D +    A++ + S G    P+  R P G        H+       A  PGLKV+ P    DA+GLL ++I+  DPVV+L +  LY
Sbjct:    3 QMTMVQAINDALKSELKRDEDVLVFGEDVGVNGGVFRVTEGLQKEFGEDRVFDTPLAESGIGGLALGLAVTGFRPVMEIQFLGFVYEVFDEVAGQIARTRFRSGGTKPAPVTIRTPFGGGVHTPELHADNLEGILAQSPGLKVVIPSGPYDAKGLLISSIQSNDPVVYLEHMKLY 177          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODBB_BOVIN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 4.354e-25
Identity = 62/177 (35.03%), Postives = 96/177 (54.24%), Query Frame = 2
Query:    8 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISV-PIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            ++M + +A+ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  R P G        HSQ   A++A  PG+KV+ P S   A+GLL + I D +P +F   ++LY
Sbjct:   69 QKMNLFQAVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVVPRSPFQAKGLLLSCIEDKNPCIFFEPKILY 244          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODBB_RAT (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 7.427e-25
Identity = 61/177 (34.46%), Postives = 96/177 (54.24%), Query Frame = 2
Query:    8 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISV-PIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  R P G        HSQ   A++A  PG+KV+ P S   A+GLL + I D +P +F   ++LY
Sbjct:   67 QKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILY 242          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODBB_MOUSE (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 7.427e-25
Identity = 61/177 (34.46%), Postives = 96/177 (54.24%), Query Frame = 2
Query:    8 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISV-PIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY 535
            ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  R P G        HSQ   A++A  PG+KV+ P S   A+GLL + I D +P +F   ++LY
Sbjct:   67 QKMNLFQSITSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRAPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILY 242          
BLAST of FC920843 vs. ExPASy Swiss-Prot
Match: ODBB_HUMAN (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 7.427e-25
Identity = 64/194 (32.99%), Postives = 102/194 (52.58%), Query Frame = 2
Query:    8 KQMMVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSPGQISV-PIVFRRPNGAAAGVGAQHSQCYAAWYASVPGLKVLSPYSSEDARGLLKAAIRDPDPVVFL*NELLY---GESFPVSAEDLDSS 577
            ++M + +++ SALD  ++ DP   + GE+V  + G ++ + GL +KYG +RV +TP+ E G  G G+G A  G   + E    ++   A D I+N AAK  Y S    +   +  R P G        HSQ   A++A  PG+KV+ P S   A+GLL + I D +P +F   ++LY    E  P+   ++  S
Sbjct:   69 QKMNLFQSVTSALDNSLAKDPTAVIFGEDVA-FGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLS 261          
The following BLAST results are available for this feature:
BLAST of FC920843 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAAC1.599e-2736.00Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAES3.562e-2734.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_STAEQ3.562e-2734.86Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODBB_BOVIN4.354e-2535.032-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_RAT7.427e-2534.462-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_MOUSE7.427e-2534.462-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
ODBB_HUMAN7.427e-2532.992-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]

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Properties
Property NameValue
Genbank descriptionC32013F12EF RVDevelop1 Citrus clementina cDNA clone C32013F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920843 ID=FC920843; Name=FC920843; organism=Citrus clementina; type=EST; length=594bp
CCCAGTTAAACAGATGATGGTGAGAGAGGCTTTAAACTCTGCTCTTGATG
AGGAGATGTCTGCTGATCCTAAAGTTTTCTTGATGGGAGAAGAGGTTGGG
GAATATCAGGGTGCTTACAAGATATCCAAAGGGCTATTGGAGAAATATGG
CCCTGAGAGAGTTCTTGATACCCCGATCACTGAGGCTGGTTTTACTGGGA
TTGGAGTTGGTGCTGCATACTATGGTTTGAAGCCTGTTGTGGAATTCATG
ACATTTAACTTCTCTATGCAGGCAATTGATCACATCATTAATTCTGCTGC
AAAATCAAATTACATGTCTCCTGGCCAAATATCGGTTCCTATCGTCTTCA
GAAGGCCTAATGGTGCTGCTGCCGGAGTGGGTGCCCAACACTCTCAATGT
TATGCAGCATGGTATGCCTCAGTCCCTGGGTTGAAAGTACTGAGCCCATA
CAGTTCTGAAGATGCTCGTGGACTGCTAAAAGCTGCTATAAGGGATCCGG
ATCCTGTTGTTTTTCTTTGAAATGAGCTGTTATATGGTGAGTCATTCCCG
GTATCAGCTGAAGATCTTGATTCCAGTTTTTGCCCTCCAATTGG
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