FC920844
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46 Identity = 93/213 (43.66%), Postives = 128/213 (60.09%), Query Frame = 3 Query: 3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641 F ++ + + P + M + A+Q+INDEL LDGN R NLA+F TW + KL+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GSSEA ML G+A K +W+++ + GKP DKPN+V G VQ+CW KFARY+ G M+P + +E DENTI V G T TG +E + LHD L K Sbjct: 18 FGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK 229
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2) HSP 1 Score: 182.956 bits (463), Expect = 1.276e-45 Identity = 92/213 (43.19%), Postives = 128/213 (60.09%), Query Frame = 3 Query: 3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641 F ++ + + P + M + A+Q+INDEL LDGN R NLA+F TW + KL+ SINKN++D +EYP + + RCVNM+A L++ P + AVG T+GSSEA ML G+A K +W+++ + GKP +KPN+V G VQ+CW KFARY+ G M+P + +E DENTI V G T TG +E + LHD L K Sbjct: 18 FGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK 229
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 1.842e-44 Identity = 93/213 (43.66%), Postives = 132/213 (61.97%), Query Frame = 3 Query: 3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641 +AS I ++ + + S E +I DEL+LDGN + NLA+F T ++ E L+ I+KN +D DEYP T E+++RCV+++A L+N+P + +G T GSSEA ML G+A K +W++ RK+QGKP+DKPNIVTG VQ+CW KFA YF Y+M P +A++ DENTI V LG T T ++EDVK + + L K Sbjct: 18 YASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSP--ESSETIGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISEALDK 227
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1) HSP 1 Score: 175.637 bits (444), Expect = 2.037e-43 Identity = 92/204 (45.10%), Postives = 126/204 (61.76%), Query Frame = 3 Query: 30 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641 I +FK+ D+ E ++I DEL+LDGN + NLA+F T ++ ++ I+KN +D DEYP + E++NRC++++A L+N P D +G T GSSEA ML GLA K W++ RK+ G PYDKPNIVTG VQ+CW KFA YF G YVMN + ++ VDENTI V LG T T ++EDV + + L K Sbjct: 25 IAKFKLADDPNEPETIKKLIMDELLLDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDVFSISNALDK 225
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2) HSP 1 Score: 172.17 bits (435), Expect = 2.252e-42 Identity = 87/213 (40.85%), Postives = 132/213 (61.97%), Query Frame = 3 Query: 3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 635 F S + +P++K+ S+ AYQ++ DE++ +GN RLNLA+F T+MEPE KL+ ++ KN +D EYP TTE++NRCVNMIA L+N ++ + +G T+GSSEA ML G+A K W+++ ++ G + KPN+V + QVCWEKF Y+ + +N K ++ VDE TI V I+G T TG ++D+K L +L+ Sbjct: 18 FGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLI 228
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 2.941e-42 Identity = 87/213 (40.85%), Postives = 132/213 (61.97%), Query Frame = 3 Query: 3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 635 F S + +P++K+ S+ AYQ++ DE++ +GN RLNLA+F T+MEPE KL+ ++ KN +D EYP TTE++NRCVNMIA L+N ++ + +G T+GSSEA ML G+A K W+++ ++ G + KPN+V + QVCWEKF Y+ + +N K ++ VDE TI V I+G T TG ++D+K L +L+ Sbjct: 18 FGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLI 228
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.614e-40 Identity = 86/211 (40.76%), Postives = 126/211 (59.72%), Query Frame = 3 Query: 3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD 629 F S +IP++ + M AYQ++ D+LM +GN R NLA+F T+ME E + L+ ++ KN +D EYP T EL+NRCVN++A L+N P D + +G TVGSSEA ML GLA K +W+ +++G +PN++ + QVCWEKF Y+ + ++ K +LVDE TI V ILG T TG+F+D++LL + Sbjct: 19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KDMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLDE 227
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 6.133e-40 Identity = 85/211 (40.28%), Postives = 125/211 (59.24%), Query Frame = 3 Query: 3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD 629 F S +IP++ + M AYQ++ D+LM +GN R NLA+F T+ME E + L+ ++ KN +D EYP T EL+NRCVN++A L+N P + + +G TVGSSEA ML GLA K +W+ +++G +PN++ + QVCWEKF Y+ + ++ K ELVDE TI + ILG T TG+F+D+ LL + Sbjct: 19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KEMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDE 227
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1) HSP 1 Score: 163.31 bits (412), Expect = 1.046e-39 Identity = 84/201 (41.79%), Postives = 122/201 (60.70%), Query Frame = 3 Query: 36 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF-XXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 635 ++ +P +P + +YQ+I++EL LDGNP LNLASFV T+ + KL+ ++ KN D DEYP EL RC++M+A L++ D+ +G T GSSEAIML GLA K++W+ + K GK KPNI+ + QV EKF RYF +++++P + VDENTI ILG+T TG E+V+ + D+L Sbjct: 59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWH--ANPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVL 257
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1) HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37 Identity = 80/204 (39.22%), Postives = 122/204 (59.80%), Query Frame = 3 Query: 30 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 635 IP++ + + AY+++ DEL+ +G+ R NLA+F T+ME E KL+ ++ KN +D EYP T EL+NRCVN+IA L++ P D+ +G T+GSSEA ML G+A K W+++ ++ G KPN+V + QVCWEKF Y+ + +N + ++ VDE TI V ILG T TG ++D+ L++ L Sbjct: 25 IPKYTLAKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKL 226 The following BLAST results are available for this feature:
BLAST of FC920844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC920844 ID=FC920844; Name=FC920844; organism=Citrus clementina; type=EST; length=674bpback to top |