FC920844

Overview
NameFC920844
Unique NameFC920844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15182 contig Ccv1_Contig15182:159..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.358e-46
Identity = 93/213 (43.66%), Postives = 128/213 (60.09%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641
            F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K
Sbjct:   18 FGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK 229          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 1.276e-45
Identity = 92/213 (43.19%), Postives = 128/213 (60.09%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641
            F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP +KPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG +E  + LHD L K
Sbjct:   18 FGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK 229          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.842e-44
Identity = 93/213 (43.66%), Postives = 132/213 (61.97%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641
            +AS      I ++ + + S   E    +I DEL+LDGN + NLA+F  T ++ E   L+   I+KN +D DEYP T E+++RCV+++A L+N+P  +    +G  T GSSEA ML G+A K +W++ RK+QGKP+DKPNIVTG  VQ+CW KFA YF             Y+M P +A++  DENTI V   LG T T ++EDVK + + L K
Sbjct:   18 YASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSP--ESSETIGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISEALDK 227          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.037e-43
Identity = 92/204 (45.10%), Postives = 126/204 (61.76%), Query Frame = 3
Query:   30 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLLPK 641
            I +FK+ D+    E   ++I DEL+LDGN + NLA+F  T ++     ++   I+KN +D DEYP + E++NRC++++A L+N P  D    +G  T GSSEA ML GLA K  W++ RK+ G PYDKPNIVTG  VQ+CW KFA YF           G YVMN  + ++ VDENTI V   LG T T ++EDV  + + L K
Sbjct:   25 IAKFKLADDPNEPETIKKLIMDELLLDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDVFSISNALDK 225          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 2.252e-42
Identity = 87/213 (40.85%), Postives = 132/213 (61.97%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 635
            F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y+            +  +N  K ++ VDE TI V  I+G T TG ++D+K L +L+
Sbjct:   18 FGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLI 228          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.941e-42
Identity = 87/213 (40.85%), Postives = 132/213 (61.97%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 635
            F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y+            +  +N  K ++ VDE TI V  I+G T TG ++D+K L +L+
Sbjct:   18 FGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLI 228          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.614e-40
Identity = 86/211 (40.76%), Postives = 126/211 (59.72%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD 629
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   D + +G  TVGSSEA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y+            +  ++  K  +LVDE TI V  ILG T TG+F+D++LL +
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KDMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLDE 227          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.133e-40
Identity = 85/211 (40.28%), Postives = 125/211 (59.24%), Query Frame = 3
Query:    3 FASRYVRPAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHD 629
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   + + +G  TVGSSEA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y+            +  ++  K  ELVDE TI +  ILG T TG+F+D+ LL +
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KEMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDE 227          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.046e-39
Identity = 84/201 (41.79%), Postives = 122/201 (60.70%), Query Frame = 3
Query:   36 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF-XXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 635
            ++ +P   +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+  ++ KN  D DEYP   EL  RC++M+A L++     D+  +G  T GSSEAIML GLA K++W+ + K  GK   KPNI+  +  QV  EKF RYF             +++++P    + VDENTI    ILG+T TG  E+V+ + D+L
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWH--ANPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVL 257          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.181e-37
Identity = 80/204 (39.22%), Postives = 122/204 (59.80%), Query Frame = 3
Query:   30 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 635
            IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T TG ++D+  L++ L
Sbjct:   25 IPKYTLAKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKL 226          
The following BLAST results are available for this feature:
BLAST of FC920844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEA_ECO573.358e-4643.66Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEB_ECOL61.276e-4543.19Glutamate decarboxylase beta OS=Escherichia coli O... [more]
GADA_DICDI1.842e-4443.66Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
GADB_DICDI2.037e-4345.10Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCE_LACLM2.252e-4240.85Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA2.941e-4240.85Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISMO1.614e-4040.76Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEC_LISIN6.133e-4040.28Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCE_YEAST1.046e-3941.79Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
DCEB_LISIN2.181e-3739.22Glutamate decarboxylase beta OS=Listeria innocua G... [more]

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Properties
Property NameValue
Genbank descriptionC32013G01EF RVDevelop1 Citrus clementina cDNA clone C32013G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920844 ID=FC920844; Name=FC920844; organism=Citrus clementina; type=EST; length=674bp
CATTTGCTTCAAGATATGTCCGTCCTGCTATTCCCAGATTCAAGATGCCA
GATAATTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGCT
GATGTTAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACTT
GGATGGAGCCCGAGTGTGATAAGCTTGTCATGGCTTCGATTAATAAAAAC
TATGTTGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGTG
TGTGAATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAGA
CTGCAGTGGGCGTGGGGACTGTAGGTTCATCAGAGGCAATAATGCTTGCT
GGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCAA
ACCCTATGATAAGCCCAATATAGTCACTGGAGCTAATGTGCAGGTATGCT
GGGAGAAATTTGCGAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAACTG
GAAGAGGGATATTATGTGATGAATCCTGTGAAAGCTGTTGAGTTGGTAGA
TGAGAACACCATTTGTGTTGCAGCCATTCTGGGATCAACCTTGACGGGAG
AATTTGAGGATGTTAAGCTTCTTCATGACCTCCTCCCAAAAAGAATGAGG
AGACCGGTTGGGACACCCCATTCA
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