FC920844

Overview
NameFC920844
Unique NameFC920844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length674
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15182 contig Ccv1_Contig15182:159..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 4.860e-37
Identity = 80/204 (39.22%), Postives = 122/204 (59.80%), Query Frame = 3
Query:   30 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 635
            IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T TG ++D+  L++ L
Sbjct:   25 IPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKL 226          
BLAST of FC920844 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 1.563e-35
Identity = 78/204 (38.24%), Postives = 122/204 (59.80%), Query Frame = 3
Query:   30 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGEFEDVKLLHDLL 635
            +P  +M   S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE ++++  ++ KN +D  EYP T +L++ CVNM+A L+N  V + +  +G  TVGSSEA ML G+A K +W+    + G      KP++V  +  QVCWEKF  Y+            +  +N    ++ VDE TI +  ILG T TG+F+D+  L+DL+
Sbjct:   23 LPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLNDLV 224          
The following BLAST results are available for this feature:
BLAST of FC920844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISMO4.860e-3739.22Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO1.563e-3538.24Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionC32013G01EF RVDevelop1 Citrus clementina cDNA clone C32013G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920844 ID=FC920844; Name=FC920844; organism=Citrus clementina; type=EST; length=674bp
CATTTGCTTCAAGATATGTCCGTCCTGCTATTCCCAGATTCAAGATGCCA
GATAATTCAATGCCAAAGGAGGCAGCCTATCAGGTAATAAATGATGAGCT
GATGTTAGATGGAAATCCAAGGCTGAACTTGGCATCTTTTGTGACCACTT
GGATGGAGCCCGAGTGTGATAAGCTTGTCATGGCTTCGATTAATAAAAAC
TATGTTGACATGGATGAATACCCTGTAACCACAGAGCTCCAGAATCGGTG
TGTGAATATGATTGCCCACCTATTTAATACTCCAGTTGCGGATGACAAGA
CTGCAGTGGGCGTGGGGACTGTAGGTTCATCAGAGGCAATAATGCTTGCT
GGCTTGGCTTTTAAAAGGAAGTGGCAGCAGAAGAGAAAAGAGCAAGGCAA
ACCCTATGATAAGCCCAATATAGTCACTGGAGCTAATGTGCAGGTATGCT
GGGAGAAATTTGCGAGGTACTTTGAGGTTGAGCTGAAGGAGGTGAAACTG
GAAGAGGGATATTATGTGATGAATCCTGTGAAAGCTGTTGAGTTGGTAGA
TGAGAACACCATTTGTGTTGCAGCCATTCTGGGATCAACCTTGACGGGAG
AATTTGAGGATGTTAAGCTTCTTCATGACCTCCTCCCAAAAAGAATGAGG
AGACCGGTTGGGACACCCCATTCA
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