FC920847

Overview
NameFC920847
Unique NameFC920847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: CHSB_PETHY (Chalcone synthase B OS=Petunia hybrida GN=CHSB PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.621e-79
Identity = 126/171 (73.68%), Postives = 150/171 (87.72%), Query Frame = 1
Query:   88 AQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            AQRA+GPA +LAIGTATP H V+Q  YPDYYFR+T S+H+ +LKEKF+R+C K+MIKKR+M+LTEE+L++NP +C++  PSLD RQDI+V E+PKLGKEAA KAI EWGQPKS ITHL+FCT SGVDMPGAD QL KL+GL PSV+R MMYQQGCFAGGT+LRLAKDLAEN
Sbjct:   13 AQRAEGPAKILAIGTATPFHWVDQNSYPDYYFRVTNSQHLVDLKEKFRRICSKTMIKKRHMFLTEELLRKNPTLCSHNEPSLDIRQDILVSEIPKLGKEAALKAIGEWGQPKSTITHLVFCTRSGVDMPGADCQLVKLLGLSPSVQRLMMYQQGCFAGGTMLRLAKDLAEN 183          

HSP 2 Score: 46.2098 bits (108), Expect = 1.621e-79
Identity = 19/33 (57.58%), Postives = 29/33 (87.88%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQA 698
            +KGARVLVVC+E +A+ FRGP++ ++D+L+ QA
Sbjct:  184 NKGARVLVVCAESSAIGFRGPSEANVDNLIAQA 216          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: DPS1_PINST (Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.620e-76
Identity = 118/178 (66.29%), Postives = 151/178 (84.83%), Query Frame = 1
Query:   70 VQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYM-APSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            ++  R +QRADG A++LAIGTA P + V+Q+ YPDYYFR+T +E  T+LK+KFKR+C++S IKKR+MYLTEEILK+NP +CA++  PSLD RQ ++  EVP+LGKEAA KAI+EWGQPKS+ITHLIFCTT+  D+PGAD+++ KL+GL PSVKR  ++Q GCFAGGTVLRLAKDLAEN
Sbjct:    9 LEAFRKSQRADGFASILAIGTANPPNVVDQSTYPDYYFRVTNNEDNTDLKDKFKRICERSAIKKRHMYLTEEILKKNPELCAFLEVPSLDTRQAMLAAEVPRLGKEAAEKAIEEWGQPKSRITHLIFCTTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRLAKDLAEN 186          

HSP 2 Score: 55.8398 bits (133), Expect = 1.620e-76
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQA 698
            ++GARVLVVCSE TAVTFRGP++THLD LVG A
Sbjct:  187 NRGARVLVVCSENTAVTFRGPSETHLDGLVGLA 219          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: DPSS_PINSY (Dihydropinosylvin synthase OS=Pinus sylvestris PE=1 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 2.113e-76
Identity = 117/174 (67.24%), Postives = 150/174 (86.21%), Query Frame = 1
Query:   82 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYM-APSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            R  QRADG A++LAIGTA P ++V+Q+ YPD+YFRIT +EH TELK+KFKR+C++S IK+RYMYLTEEILK+NP++CA++  PSLDARQ ++ +EVP+L KEAA KAI+EWGQ KS ITHLIFC+T+  D+PGAD+++ KL+GL PSVKR  ++Q GCFAGGTVLR+AKDLAEN
Sbjct:   10 RKLQRADGFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDARQAMLAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAEN 183          

HSP 2 Score: 60.4622 bits (145), Expect = 2.113e-76
Identity = 27/33 (81.82%), Postives = 32/33 (96.97%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQA 698
            ++GARVLV+CSE TAVTFRGP++THLDSLVGQA
Sbjct:  184 NRGARVLVICSETTAVTFRGPSETHLDSLVGQA 216          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: DPS2_PINST (Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 2.755e-76
Identity = 119/178 (66.85%), Postives = 151/178 (84.83%), Query Frame = 1
Query:   70 VQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYM-APSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            ++  R +QRADG A++LAIGTA P + V+Q+ YPDYYFR T +E  T+LK+KFKR+C++S IKKR+MYLTEEILK+NP +CA++  PSLD RQ ++ VEVP+LGKEAA KAI+EWGQPKS+ITHLIFCTT+  D+PGAD+++ KL+GL PSVKR  ++Q GCFAGGTVLRLAKDLAEN
Sbjct:    9 LEAFRKSQRADGFASILAIGTANPPNVVDQSTYPDYYFRNTNNEDNTDLKDKFKRICERSAIKKRHMYLTEEILKKNPELCAFLEVPSLDTRQAMLAVEVPRLGKEAAEKAIEEWGQPKSRITHLIFCTTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRLAKDLAEN 186          

HSP 2 Score: 55.8398 bits (133), Expect = 2.755e-76
Identity = 26/33 (78.79%), Postives = 30/33 (90.91%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQA 698
            ++GARVLVVCSE TAVTFRGP++THLD LVG A
Sbjct:  187 NRGARVLVVCSENTAVTFRGPSETHLDGLVGLA 219          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: CHSY_PERAE (Chalcone synthase OS=Persea americana GN=CHS PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 7.288e-74
Identity = 120/181 (66.30%), Postives = 136/181 (75.14%), Query Frame = 1
Query:   61 MATVQEIRNAQRADGPATVLAIGTATPAHSVNQADYPDYY-FRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            M  V+ IR  QRA+GPAT++AIGT+TP ++V+Q++YPDYY F    +      +  FKRMC+KSMIKKRYMYLTE   K            L ARQD+VVVEVPKLGKE   KAIK  GQPKSKI  L+FCTTSGVDMPGADYQLTK+ GL PSVKR MMYQQGCFAGGTVLRLAKDLAEN
Sbjct:    1 MVNVEAIRKVQRAEGPATIMAIGTSTPPNAVDQSEYPDYYYFGSPTASTRPSSRRSFKRMCEKSMIKKRYMYLTETYWKRIQMFVPTWLLPLKARQDMVVVEVPKLGKEVQPKAIKGMGQPKSKINPLVFCTTSGVDMPGADYQLTKVFGLPPSVKRLMMYQQGCFAGGTVLRLAKDLAEN 181          

HSP 2 Score: 65.4698 bits (158), Expect = 7.288e-74
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQA 698
            +KGARVLVVCSEITAVTFRGP+DTHLDSLVGQA
Sbjct:  182 NKGARVLVVCSEITAVTFRGPSDTHLDSLVGQA 214          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPL (Chalcone synthase A (Fragment) OS=Ipomoea platensis GN=CHSA PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.766e-72
Identity = 121/173 (69.94%), Postives = 146/173 (84.39%), Query Frame = 1
Query:   82 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            R A+R +G A +LA+GTATPA+ V+Q  YPD+YFRIT SEH+ E KEKF+R+C+KS I+KR++ LTEE+LK+NPN+C Y   SL+ RQD +V EVPKLGKEAA KAIKEWG+P S+ITHL+FCTTSGVDMPGAD+QLTKL+GL  SVKR MMYQQGC AG  +LRLAKDLAEN
Sbjct:   12 RRAKRFEGHAKILAVGTATPANWVDQTTYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHLVLTEELLKKNPNLCTYNETSLNTRQDTLVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNISVKRLMMYQQGCNAGAAMLRLAKDLAEN 184          

HSP 2 Score: 40.817 bits (94), Expect = 1.766e-72
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQ 695
            +KGARVLVVCSE+T   FRGP+    D+L+ Q
Sbjct:  185 NKGARVLVVCSEVTLSVFRGPSLQQEDNLLAQ 216          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: CHSB_IPOPU (Chalcone synthase B OS=Ipomoea purpurea GN=CHSB PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.926e-71
Identity = 121/173 (69.94%), Postives = 146/173 (84.39%), Query Frame = 1
Query:   82 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            R A+R +G A +LAIGTATPA  V+Q  YPD+YFRIT S+H+ E KEKF+R+C+KS I+KR++ LTEE+LK+NPN+C Y   SL+ RQDI+V EVPKLGKEAA KAIKEWG+P S+ITHL+FCTTSGVDMPGAD+QLTKL+GL  SVKR MMYQQGC AG  +LRLAKDLAE+
Sbjct:   14 RRAKRLEGDAKILAIGTATPASWVDQTTYPDFYFRITNSQHLLEHKEKFRRICNKSKIRKRHLVLTEELLKKNPNLCTYNETSLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLAKDLAES 186          

HSP 2 Score: 37.3502 bits (85), Expect = 1.926e-71
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQ 695
            +KG RVLVVC+EIT   FRGP+    D+L+ Q
Sbjct:  187 NKGGRVLVVCAEITINIFRGPSLEQDDNLLAQ 218          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: CHSA_IPOTF (Chalcone synthase A (Fragment) OS=Ipomoea trifida GN=CHSA PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 1.927e-71
Identity = 124/180 (68.89%), Postives = 150/180 (83.33%), Query Frame = 1
Query:   64 ATVQEIRN-AQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            ATVQ   + A+R +G A +LAIGTATP + V+QA YPD+YFRIT SEH+ E KEKF+R+C+KS I+KR++ LT+E+LK+NPN+C Y   SL+ RQDI+V EVPKLGKEAA KAIKEWG+P S+ITHL+FCTTSGVDMPGAD+QLTKL+GL  SVKR MMYQQGC AG  +LRL KDLAEN
Sbjct:    5 ATVQLTDDTAKRFEGHAKLLAIGTATPTNWVDQATYPDFYFRITNSEHLLEHKEKFRRICNKSKIRKRHLVLTKELLKKNPNLCTYNDASLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLVKDLAEN 184          

HSP 2 Score: 40.0466 bits (92), Expect = 1.927e-71
Identity = 20/32 (62.50%), Postives = 24/32 (75.00%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQ 695
            +KGARVLVVCSEIT   FRGP+    D+L+ Q
Sbjct:  185 NKGARVLVVCSEITINIFRGPSLEQDDNLLAQ 216          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: CHSB_IPOCO (Chalcone synthase B (Fragment) OS=Ipomoea cordatotriloba GN=CHSB PE=3 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 2.513e-71
Identity = 120/173 (69.36%), Postives = 146/173 (84.39%), Query Frame = 1
Query:   82 RNAQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            R  +R +G A +LAIGTATPA+ V+Q  YPD+YFRIT S+H+ + KEKF+R+C+KS I+KR+M LTEE+LK+NPN+C Y   SL+ RQDI+V EVPKLGKEAA KAIKEWG+P S+ITHL+FCTTSGVDMPGAD+QLTKL+GL  SVKR MMYQQGC AG  +LRLAKD+AEN
Sbjct:   14 RREKRFEGHAKILAIGTATPANWVDQTTYPDFYFRITNSQHLLDHKEKFRRICNKSKIRKRHMILTEELLKKNPNLCTYNDASLNTRQDILVSEVPKLGKEAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLAKDVAEN 186          

HSP 2 Score: 38.5058 bits (88), Expect = 2.513e-71
Identity = 18/32 (56.25%), Postives = 23/32 (71.88%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQ 695
            +KGARVLVVCSE+    FRGP+    D+L+ Q
Sbjct:  187 NKGARVLVVCSEVMLSVFRGPSLQQEDNLLAQ 218          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: CHSA_IPOPU (Chalcone synthase A OS=Ipomoea purpurea GN=CHSA PE=3 SV=2)

HSP 1 Score: 252.292 bits (643), Expect = 5.571e-71
Identity = 120/171 (70.18%), Postives = 145/171 (84.80%), Query Frame = 1
Query:   88 AQRADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            A+R +G A +LAIGTATPA+ V+Q  YPD+YFRIT SEH+ E KEKF+R+C+KS I KR++ +TEE+LK+NPN+C Y   SL+ RQDI+V EVPKLGK+AA KAIKEWG+P S+ITHL+FCTTSGVDMPGAD+QLTKL+GL  SVKR MMYQQGC AG  +LRLAKDLAEN
Sbjct:   16 AKRLEGDAKILAIGTATPANWVDQTTYPDFYFRITNSEHLLEHKEKFRRICNKSKIMKRHLVITEELLKKNPNLCTYNEASLNTRQDILVSEVPKLGKDAAMKAIKEWGRPISEITHLVFCTTSGVDMPGADFQLTKLLGLNSSVKRLMMYQQGCNAGAAMLRLAKDLAEN 186          

HSP 2 Score: 36.965 bits (84), Expect = 5.571e-71
Identity = 17/32 (53.12%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQ 695
            +KG RVLVVCSE+    FRGP+    D+L+ Q
Sbjct:  187 NKGGRVLVVCSEVMLSVFRGPSLQQEDNLLAQ 218          
The following BLAST results are available for this feature:
BLAST of FC920847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
CHSB_PETHY1.621e-7973.68Chalcone synthase B OS=Petunia hybrida GN=CHSB PE=... [more]
DPS1_PINST1.620e-7666.29Pinosylvin synthase 1 OS=Pinus strobus GN=STS1 PE=... [more]
DPSS_PINSY2.113e-7667.24Dihydropinosylvin synthase OS=Pinus sylvestris PE=... [more]
DPS2_PINST2.755e-7666.85Pinosylvin synthase 2 OS=Pinus strobus GN=STS2 PE=... [more]
CHSY_PERAE7.288e-7466.30Chalcone synthase OS=Persea americana GN=CHS PE=2 ... [more]
CHSA_IPOPL1.766e-7269.94Chalcone synthase A (Fragment) OS=Ipomoea platensi... [more]
CHSB_IPOPU1.926e-7169.94Chalcone synthase B OS=Ipomoea purpurea GN=CHSB PE... [more]
CHSA_IPOTF1.927e-7168.89Chalcone synthase A (Fragment) OS=Ipomoea trifida ... [more]
CHSB_IPOCO2.513e-7169.36Chalcone synthase B (Fragment) OS=Ipomoea cordatot... [more]
CHSA_IPOPU5.571e-7170.18Chalcone synthase A OS=Ipomoea purpurea GN=CHSA PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013G05EF RVDevelop1 Citrus clementina cDNA clone C32013G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920847 ID=FC920847; Name=FC920847; organism=Citrus clementina; type=EST; length=698bp
TCGCCGGGGGAACTCACCAAGCACGAGCCACCAACATATTCATTAAGGGT
TCAACTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCG
ACGGCCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGT
GTCAACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGA
GCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGA
TGATTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAAC
CCCAACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACAT
TGTGGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCA
TCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGC
ACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACT
GATCGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGAT
GTTTCGCCGGTGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAAC
ACAAGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCGGTCACT
TTCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGNCAGGCT
back to top