FC920847

Overview
NameFC920847
Unique NameFC920847
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10260 contig Ccv1_Contig10260:1..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: THS2_ARAHY (Putative stilbene synthase 2 (Fragment) OS=Arachis hypogaea PE=5 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 7.612e-55
Identity = 85/104 (81.73%), Postives = 95/104 (91.35%), Query Frame = 1
Query:  289 LKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            LKENPNMCAY APSLDAR+D+++ EVP++GKEAATKAIKEWGQP SKITHLIFCTTSGV +PG DY+L  L+GL PSVKR+MMY QGCFAGGTVLRLAKDLAEN
Sbjct:    1 LKENPNMCAYKAPSLDAREDMMIREVPRVGKEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFAGGTVLRLAKDLAEN 104          

HSP 2 Score: 53.9138 bits (128), Expect = 7.612e-55
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQA 698
            +K ARVL+VCSE TAVTFRGP++T +DSLVGQA
Sbjct:  105 NKDARVLIVCSENTAVTFRGPSETDMDSLVGQA 137          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: CHS6_MEDSA (Chalcone synthase 6-4 (Fragment) OS=Medicago sativa GN=CHS6-4 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.334e-49
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 1
Query:  373 LGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            LGKEAA KAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAEN
Sbjct:    1 LGKEAAVKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAEN 76          

HSP 2 Score: 65.0846 bits (157), Expect = 3.334e-49
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQA 698
            +KGARVLVVCSE+TAVTFRGP+DTHLDSLVGQA
Sbjct:   77 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQA 109          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: CHS7_MEDSA (Chalcone synthase (Fragment) OS=Medicago sativa GN=CHSII PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.598e-35
Identity = 52/57 (91.23%), Postives = 54/57 (94.74%), Query Frame = 1
Query:  430 ITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAEN 600
            ITHLI CTTS VDMPGADYQLTKL+GLRP VKR+MMYQQGCFAGGTVLRLAKDLAEN
Sbjct:    1 ITHLIVCTTS-VDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAEN 56          

HSP 2 Score: 65.0846 bits (157), Expect = 1.598e-35
Identity = 30/33 (90.91%), Postives = 33/33 (100.00%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQA 698
            +KGARVLVVCSE+TAVTFRGP+DTHLDSLVGQA
Sbjct:   57 NKGARVLVVCSEVTAVTFRGPSDTHLDSLVGQA 89          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: CHSY_MALDO (Chalcone synthase (Fragment) OS=Malus domestica GN=CHS PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 2.255e-19
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 3
Query:  600 HKGARVLVVCSEITAVTFRGPADTHLDSLVGQA 698
            +KGARVLVVCSEITAVTFRGP+DTHLDSLVGQA
Sbjct:   24 NKGARVLVVCSEITAVTFRGPSDTHLDSLVGQA 56          

HSP 2 Score: 50.8322 bits (120), Expect = 2.255e-19
Identity = 23/23 (100.00%), Postives = 23/23 (100.00%), Query Frame = 1
Query:  532 MMYQQGCFAGGTVLRLAKDLAEN 600
            MMYQQGCFAGGTVLRLAKDLAEN
Sbjct:    1 MMYQQGCFAGGTVLRLAKDLAEN 23          
BLAST of FC920847 vs. ExPASy Swiss-Prot
Match: PKS1_DICDI (Probable polyketide synthase 1 OS=Dictyostelium discoideum GN=stlA PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.590e-16
Identity = 58/199 (29.15%), Postives = 98/199 (49.25%), Query Frame = 1
Query:   28 PPTYSLRV-QLEMATVQEIRNAQ--------RADGPATVLAIGTATPAHSVNQADYPDYYFRITKSEHMTELKEKFKRMCDKSMIKKRYMYLTEEILKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLIFCTTSGVDMPGADYQLTKLIGLRPSVKRFMMYQQGCFAGGTVLRLAKDLAE 597
            PP  S++  Q +   VQ I+  Q        +++  + VL IG + P   ++Q    D        +   E  EK KR+ ++S IK R++ + +    EN     ++    D       V VP L ++A  +A+K+WG  K  ITH++  T++G+ +P  +++L  L+GL   V+R  +   GC AG + LR A  LA+
Sbjct: 2751 PPIQSVQQHQKQQQKVQVIQQQQQPLSRLSYKSNNNSFVLGIGISVPGEPISQQSLKDSISNDFSDK--AETNEKVKRIFEQSQIKTRHL-VRDYTKPENSIKFRHLETITDVNNQFKKV-VPDLAQQACLRALKDWGGDKGDITHIVSVTSTGIIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAK 2945          

HSP 2 Score: 21.1718 bits (43), Expect = 5.590e-16
Identity = 7/14 (50.00%), Postives = 12/14 (85.71%), Query Frame = 3
Query:  612 RVLVVCSEITAVTF 653
            R+LVVC+E+ ++ F
Sbjct: 2951 RILVVCTEVCSLHF 2964          
The following BLAST results are available for this feature:
BLAST of FC920847 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
THS2_ARAHY7.612e-5581.73Putative stilbene synthase 2 (Fragment) OS=Arachis... [more]
CHS6_MEDSA3.334e-4994.74Chalcone synthase 6-4 (Fragment) OS=Medicago sativ... [more]
CHS7_MEDSA1.598e-3591.23Chalcone synthase (Fragment) OS=Medicago sativa GN... [more]
CHSY_MALDO2.255e-1993.94Chalcone synthase (Fragment) OS=Malus domestica GN... [more]
PKS1_DICDI5.590e-1629.15Probable polyketide synthase 1 OS=Dictyostelium di... [more]

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Properties
Property NameValue
Genbank descriptionC32013G05EF RVDevelop1 Citrus clementina cDNA clone C32013G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920847 ID=FC920847; Name=FC920847; organism=Citrus clementina; type=EST; length=698bp
TCGCCGGGGGAACTCACCAAGCACGAGCCACCAACATATTCATTAAGGGT
TCAACTTGAAATGGCAACCGTTCAAGAGATCAGAAACGCTCAGCGTGCCG
ACGGCCCGGCCACCGTCCTCGCCATCGGTACGGCCACGCCTGCCCACAGT
GTCAACCAGGCTGATTATCCCGACTATTACTTCAGGATCACAAAGAGCGA
GCATATGACGGAGCTTAAAGAGAAGTTCAAGCGCATGTGTGACAAGTCGA
TGATTAAGAAGCGTTACATGTACTTAACGGAAGAGATTTTGAAGGAAAAC
CCCAACATGTGCGCTTACATGGCTCCATCACTCGACGCACGTCAAGACAT
TGTGGTGGTCGAAGTGCCGAAGCTCGGGAAAGAAGCTGCTACAAAGGCCA
TCAAAGAATGGGGCCAGCCCAAGTCTAAGATCACCCACCTCATCTTCTGC
ACCACCTCCGGCGTCGACATGCCCGGCGCCGACTACCAGCTCACCAAACT
GATCGGCCTGCGCCCCTCCGTCAAGCGCTTCATGATGTACCAACAAGGAT
GTTTCGCCGGTGGCACTGTTCTTCGCCTCGCTAAAGACTTGGCTGAGAAC
ACAAGGGCGCTCGCGTTCTTGTTGTCTGTTCGGAGATCACGGCGGTCACT
TTCCGCGGCCCTGCCGATACTCATCTTGATTCTCTTGTGGGNCAGGCT
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