FC920849

Overview
NameFC920849
Unique NameFC920849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920849_ssr245 microsatellite FC920849_ssr245:245..256. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15047 contig Ccv1_Contig15047:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_ARATH (Trans-cinnamate 4-monooxygenase OS=Arabidopsis thaliana GN=CYP73A5 PE=2 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 1.885e-81
Identity = 151/188 (80.32%), Postives = 161/188 (85.64%), Query Frame = 1
Query:  109 VSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            +SKLRGK+              NWLQVGDDLNHRNL D AKK+GD+ LLRMGQRNLVVVSSPD  KEVL TQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R  WE EAA VVEDVKK+P++AT GIVLR+RLQLMMYNNM+RIMFDRRFES+DDPLF RLKALN
Sbjct:   23 ISKLRGKKLKLPPGPIPIPIFGNWLQVGDDLNHRNLVDYAKKFGDLFLLRMGQRNLVVVSSPDLTKEVLLTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQNREGWEFEAASVVEDVKKNPDSATKGIVLRKRLQLMMYNNMFRIMFDRRFESEDDPLFLRLKALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_PEA (Trans-cinnamate 4-monooxygenase OS=Pisum sativum GN=CYP73A9 PE=2 SV=2)

HSP 1 Score: 299.286 bits (765), Expect = 1.222e-80
Identity = 147/190 (77.37%), Postives = 164/190 (86.32%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            IT+SKLRGK               NWLQVGDDLNHRNL+DLAK++ ++LLLRM QRNLVV+SSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQD+VFTVYGEHWRKMRRIMTVPFFTNKVVQQ RF WE EAA VV+DVKK+ +A+ NGIV+RRRLQLMMYN MYRIMFDRRFES++DPLF +LKALN
Sbjct:   21 ITISKLRGKPFKLPPGPFPVPVFGNWLQVGDDLNHRNLTDLAKRFAEILLLRMEQRNLVVISSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDIVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVDDVKKNSKASVNGIVIRRRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_MEDSA (Trans-cinnamate 4-monooxygenase OS=Medicago sativa GN=CYP73A3 PE=2 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.327e-78
Identity = 143/190 (75.26%), Postives = 159/190 (83.68%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            +T+SKLRGKR               WLQVGDDLNHRNL+D AK++G++ LLRMGQRNLVVVSSP+ AKEVLHTQ VEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQ R+ WE EA  VV DVK + EA+  GIV+R+RLQLMMYN MYRIMFDRRFES++DPLF +LKALN
Sbjct:   21 VTISKLRGKRFKLPPGPIPVPIFGYWLQVGDDLNHRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQCVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRYGWESEAESVVNDVKNNAEASVGGIVIRKRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALN 210          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: TCMO_CICAR (Trans-cinnamate 4-monooxygenase OS=Cicer arietinum GN=CYP73A19 PE=2 SV=2)

HSP 1 Score: 290.812 bits (743), Expect = 4.345e-78
Identity = 148/190 (77.89%), Postives = 162/190 (85.26%), Query Frame = 1
Query:  103 ITVSKLRGKRXXXXXXXXXXXXXXNWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKALN 672
            IT+SKLRGKR              NWLQVGDDLNHRNL+DLAK++GD+ LLRMGQRNLVVVSSP+ AKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYG    +MRRIMTVPFFTNKVVQQ RF WE EA  VV+DVKK+PEA ++GIVLRRRLQLMMYN MYRIMFDRRFES++DPLF +LKALN
Sbjct:   21 ITISKLRGKRFKLPPGPIPVPVFGNWLQVGDDLNHRNLTDLAKRFGDIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGT-LAEMRRIMTVPFFTNKVVQQYRFGWEFEAQSVVDDVKKNPEACSSGIVLRRRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALN 209          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C75A1_PINTA (Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.599e-18
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 1
Query:  205 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQD 639
            HR L +LA+KYG +L LR G    VVVSS + AK  L T  + F SR    V   F    +D+ F+ YG+HWRKMR+I  +   T+K ++  +   ++E + ++  + ++ E+    + + + +   + N ++RI+  ++F   D
Sbjct:   63 HRTLKNLAEKYGPILFLRFGSVPTVVVSSSEKAKHFLKTHDLIFASRPPTSVGKYFFYNFKDIAFSPYGDHWRKMRKICVLELLTSKRIESFKHVRQEELSAMIHSIWEESESGRIAVNVSKAISTSLANILWRILARKKFSDND 207          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71DB_LOTJA (Cytochrome P450 71D11 (Fragment) OS=Lotus japonicus GN=CYP71D11 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.296e-17
Identity = 47/146 (32.19%), Postives = 83/146 (56.85%), Query Frame = 1
Query:  205 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD 642
            HR L DLAKKYG ++ L++G+   ++VSS ++AKEV+ T  V F SR R++  DI      D+ F+ YG++WR++R+I  V   + K VQ      E+E   +++ +  +  +  N   L + +  +++    R  F +R+  Q++
Sbjct:   41 HRKLRDLAKKYGPLMHLQLGEVIFIIVSSAEYAKEVMKTHDVTFASRPRSLFTDIVFYGSTDIGFSPYGDYWRQVRKICNVELLSMKRVQSLWPIREEEVKNLIQRIASEEGSVVN---LSQAIDSLIFTITSRSAFGKRYMEQEE 183          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C98A3_ARATH (Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CYP98A3 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.529e-17
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 1
Query:  226 AKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKD---PEAATNGIVLRRRLQLMMYNNMYRIMFDRRF 627
            A+ YG ++ + +G    VVVSS + AKEVL     +   R RN   + F+  GQD+++  YG H+ K+R++ T+  FT K ++  R   EDE   +VE V +D   PE    G+ LR+ L  + +NN+ R+ F +RF
Sbjct:   55 AQSYGPIISVWIGSILNVVVSSAELAKEVLKEHDQKLADRHRNRSTEAFSRNGQDLIWADYGPHYVKVRKVCTLELFTPKRLESLRPIREDEVTAMVESVFRDCNLPENRAKGLQLRKYLGAVAFNNITRLAFGKRF 191          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71A3_SOLME (Cytochrome P450 71A3 (Fragment) OS=Solanum melongena GN=CYP71A3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.772e-16
Identity = 41/146 (28.08%), Postives = 85/146 (58.22%), Query Frame = 1
Query:  205 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD 642
            HR+L  L+KKYG V+LL +G + ++V SS +  ++++ T  + + +R ++ + D      +D+ F+ +GE+WR++R I  +   +NK VQ  R   E+E + ++E +K+   ++++   LR     + YN + R+   +++  + D
Sbjct:   46 HRSLHKLSKKYGPVMLLHLGSKPVIVASSVEAVRDIMKTNDLVWSNRPKSKMADRLIYGSKDVSFSPHGEYWRQIRSITVLHLLSNKRVQSYRAAREEETSNMIEKLKQMSNSSSSATDLRDLFCWLAYNIINRVALGKKYNDEID 191          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71AO_ARATH (Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=CYP71A24 PE=2 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 3.621e-16
Identity = 51/157 (32.48%), Postives = 84/157 (53.50%), Query Frame = 1
Query:  205 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD--PLFNRLKAL 669
            HR+L  L+ +YG ++LL  G   ++VVSS D AK+VL T    F SR R+ +FD     G+D+    YGE+WR+M+ +  +  F+NK+V+  R   ++E + ++E ++       N   L   L  +  N + R+   R++  + D   L  RL  L
Sbjct:   54 HRSLCSLSHRYGPLMLLHFGSVPVLVVSSADAAKDVLKTHDRVFASRPRSKIFDKIFYNGRDVALAPYGEYWRQMKSVCVLHLFSNKMVRSFRDVRQEEISLMIEKIRISSSLRIN---LSEILVNLTNNVICRVALGRKYGGKTDFKDLMKRLTRL 207          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71B5_ARATH (Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CYP71B5 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.729e-16
Identity = 48/142 (33.80%), Postives = 82/142 (57.75%), Query Frame = 1
Query:  205 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDP-EAATNGIVLRRRLQLMMYNNMYRIMFDRRF 627
            H++L  ++++YG V+LL  G   +++VSS + A+EVL T  +E  SR + V   +FT   +D+ F  YGE+WR+MR+I     F+ K ++  R+  EDE+  +V  V K   E  T+ + LR+ +     + + R+ F + F
Sbjct:   49 HKSLHKISQEYGPVMLLHFGVVPVIIVSSKEGAEEVLKTHDLETCSRPKTVGSGLFTYNFKDIGFAPYGENWREMRKIAVSELFSQKKLKSFRYIREDESQLLVRKVSKSALETPTSSVNLRKVIFTFAASIICRLSFGQNF 190          
The following BLAST results are available for this feature:
BLAST of FC920849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
TCMO_ARATH1.885e-8180.32Trans-cinnamate 4-monooxygenase OS=Arabidopsis tha... [more]
TCMO_PEA1.222e-8077.37Trans-cinnamate 4-monooxygenase OS=Pisum sativum G... [more]
TCMO_MEDSA3.327e-7875.26Trans-cinnamate 4-monooxygenase OS=Medicago sativa... [more]
TCMO_CICAR4.345e-7877.89Trans-cinnamate 4-monooxygenase OS=Cicer arietinum... [more]
C75A1_PINTA6.599e-1831.72Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 P... [more]
C71DB_LOTJA7.296e-1732.19Cytochrome P450 71D11 (Fragment) OS=Lotus japonicu... [more]
C98A3_ARATH9.529e-1736.50Cytochrome P450 98A3 OS=Arabidopsis thaliana GN=CY... [more]
C71A3_SOLME2.772e-1628.08Cytochrome P450 71A3 (Fragment) OS=Solanum melonge... [more]
C71AO_ARATH3.621e-1632.48Cytochrome P450 71A24 OS=Arabidopsis thaliana GN=C... [more]
C71B5_ARATH4.729e-1633.80Cytochrome P450 71B5 OS=Arabidopsis thaliana GN=CY... [more]

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Properties
Property NameValue
Genbank descriptionC32013G08EF RVDevelop1 Citrus clementina cDNA clone C32013G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920849 ID=FC920849; Name=FC920849; organism=Citrus clementina; type=EST; length=673bp
GGACCACTGGAGTCCCTGTATCTCATTACGTTAATCGTAAAGATGGATCT
CCTCTTGCTGGAAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGTTGTCG
CCATTACCGTCTCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGC
CCCCTCCCCGTCCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTT
GAACCATCGGAACCTCTCCGACTTAGCCAAGAAATATGGAGATGTCCTCC
TCCTCCGCATGGGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGGACCAC
GCCAAGGAGGTTCTGCACACGCAGGGAGTGGAGTTCGGATCACGAACGAG
GAACGTCGTGTTCGATATCTTCACTGGGAAGGGCCAGGACATGGTGTTCA
CAGTGTACGGCGAGCACTGGCGGAAGATGCGGAGGATCATGACCGTCCCT
TTCTTCACGAACAAAGTGGTTCAGCAGCAGCGGTTTAATTGGGAAGACGA
GGCCGCTAGAGTCGTTGAGGATGTTAAGAAGGACCCCGAGGCGGCGACCA
ATGGGATCGTCTTGAGGAGGCGGCTGCAGCTTATGATGTACAACAACATG
TACAGGATTATGTTTGATAGAAGATTCGAGAGTCAGGATGATCCTTTGTT
TAACAGATTAAAGGCTTTGAATG
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