FC920849

Overview
NameFC920849
Unique NameFC920849
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920849_ssr245 microsatellite FC920849_ssr245:245..256. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15047 contig Ccv1_Contig15047:1..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71DC_CATRO (Tabersonine 16-hydroxylase (Fragment) OS=Catharanthus roseus GN=CYP71D12 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.860e-14
Identity = 45/154 (29.22%), Postives = 78/154 (50.65%), Query Frame = 1
Query:  184 QVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNV-VFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDD 642
            Q+     H  L DLAKKYG ++ L++G+ + +V SSP  A+E+  T  + F  R  N+  F I +    DMV + YG +WR++R+I  +   + K VQ  R   E+E    ++ +        N   L + + L++Y    R  F  + ++ ++
Sbjct:   41 QLSGGHTHHILRDLAKKYGPLMHLKIGEVSTIVASSPQIAEEIFRTHDILFADRPSNLESFKIVSYDFSDMVVSPYGNYWRQLRKISMMELLSQKSVQSFRSIREEEVLNFIKSIGSKEGTRIN---LSKEISLLIYGITTRAAFGEKNKNTEE 191          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71A2_SOLME (Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71A2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.288e-13
Identity = 44/155 (28.39%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  175 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQD 639
            N  Q+G  L HR+L  L++KYG V+LL  G + ++V SS D A++++ T  V + SR ++ + D  +   +D+ F+ +GE+WR+ + I  +   +N  VQ  R    +E A ++  +++  +++   I L   L  +  N + R+   R ++ ++
Sbjct:   49 NLHQLGS-LPHRSLHKLSQKYGPVMLLHFGSKPVIVASSVDAARDIMKTHDVVWASRPKSSIVDRLSYGSKDVGFSPFGEYWRRAKSITVLHLLSNTRVQSYRNVRAEETANMIGKIRQGCDSSV--INLGEHLCSLTNNIISRVALGRTYDEKE 200          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71D9_SOYBN (Cytochrome P450 71D9 OS=Glycine max GN=CYP71D9 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 37/96 (38.54%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  187 VGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQ 474
            VG  L H  L DL+ KYG ++ L++G+ + +VVSSP++AKEV+ T    F SR   +  +I     + + FT YG++WR++R+I  +   ++K VQ
Sbjct:   52 VGSPLPHHRLRDLSAKYGSLMHLKLGEVSTIVVSSPEYAKEVMKTHDHIFASRPYVLAAEIMDYDFKGVAFTPYGDYWRQLRKIFALELLSSKRVQ 147          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71BL_ARATH (Cytochrome P450 71B21 OS=Arabidopsis thaliana GN=CYP71B21 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 49/155 (31.61%), Postives = 86/155 (55.48%), Query Frame = 1
Query:  175 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQD 639
            N  Q+G  L HR+   L+++YG V+ LR G   +VV S+ + A+EVL T  +E  +R +     +FT   +D+ F  YGE WR+MR++  +  F++K ++  R+  E+E+  +V+ V +  +  T  + LR+ L     + + R+ F + F   D
Sbjct:   40 NLHQLGKSL-HRSFYKLSQEYGPVMFLRFGVVPVVVFSTKEAAEEVLKTHDLETCTRPKLSATGLFTYNFKDIGFAQYGEDWREMRKLAMLELFSSKKLKAFRYIREEESELLVKKVTESAQTQTL-VDLRKALFSYTASIVCRLAFGQNFHECD 192          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71B8_ARATH (Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CYP71B8 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.682e-13
Identity = 48/157 (30.57%), Postives = 85/157 (54.14%), Query Frame = 1
Query:  199 LNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQDDPLFNRLKAL 669
            L H +   L+ ++G V+LLR G   +VV+SS + AK+VL ++ +E  SR + V   +FT   +D+ F  YGE WR+M++++ +  F  K  +  R+  E+E   +V+ + K  +  T  + LR+         ++R+ F + F   D    +RL+ L
Sbjct:   49 LLHSSFHKLSLEHGPVMLLRFGVVPMVVISSKEAAKQVLKSRDLETCSRPKLVANGLFTRNFKDIAFAQYGEDWREMKKLVGLELFNPKKHKFFRYIREEEGDLLVKKLSKSSQTQTL-VDLRKAFFSFTAGIIFRVSFGQNFRECDFIDMDRLEEL 204          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71AC_ARATH (Cytochrome P450 71A12 OS=Arabidopsis thaliana GN=CYP71A12 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.197e-13
Identity = 38/116 (32.76%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  205 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATN 552
            HR+L  L+ +YG ++LL  G+  ++VVSS + A+EVL T  ++F +R R+         G+D+VF  YGE+WR+M+ +  +   TNK+V       E+E   +++ ++K   ++++
Sbjct:   54 HRSLHSLSLRYGPLMLLHFGRVPILVVSSGEAAQEVLKTHDLKFANRPRSKAVHGLMNGGRDVVFGPYGEYWRQMKSVCILNLLTNKMVASFEKIREEELNEMIKKLEKASSSSSS 169          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71BM_ARATH (Cytochrome P450 71B22 OS=Arabidopsis thaliana GN=CYP71B22 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.869e-13
Identity = 48/155 (30.97%), Postives = 84/155 (54.19%), Query Frame = 1
Query:  175 NWLQVGDDLNHRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDRRFESQD 639
            N  Q+G  L HR+   L++ YG V+ L  G   +VVVS+ + A+EVL T  +E  +R +     +F+   +D+ F  YG+ WR+MR++  +  F++K ++  R+  E+E+  +V  + K  E  T  + LR+ L     + + R+ F + F   D
Sbjct:   40 NLHQLGKSL-HRSFHKLSQNYGPVMFLHFGVVPVVVVSTREAAEEVLKTHDLETCTRPKLTATKLFSYNYKDIGFAQYGDDWREMRKLAMLELFSSKKLKAFRYIREEESEVLVNKLSKSAETRTM-VDLRKALFSYTASIVCRLAFGQNFHECD 192          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71C4_MAIZE (Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.894e-13
Identity = 55/166 (33.13%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  181 LQVGDDLNHRNLSDLAKKYG-DVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATNGIVLRRRLQLMMYNNMYRIMFDR-RFESQDDPLFNRLKALN 672
            L +  D+ + +L+ LA +YG D++LLR+G    VVVSSP  A+ VL T    F SR R++V DI      D  F  YG+H+RK R+++TV       V+ QR   E+E    ++ V++   AA   + +   L   + N + R +  +   E   + LF  L  +N
Sbjct:   81 LHLMGDIPYVSLAALATRYGPDLMLLRLGAVPTVVVSSPRVAEAVLRTYDHVFSSRPRSLVSDIIMYGATDSCFAPYGDHFRKARKLVTVHLLNASKVRSQRPAREEEVRGALDRVRR-AAAAREPVDMSELLHSFVNNLVCRAVSGKFSMEEGRNRLFRELTDIN 245          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C98A2_SOYBN (Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 44/147 (29.93%), Postives = 80/147 (54.42%), Query Frame = 1
Query:  208 RNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKKDPEAATN---GIVLRRRLQLMMYNNMYRIMFDRRFESQD 639
            R  ++ A+ YG ++ +  G    V+VS+ + AKEVL         R R+     F+  G+D+++  YG H+ K+R++ T+  F+ K ++  R   EDE   +V+ V     +  N   GI+LR+ L ++ +NN+ R+ F +RF + +
Sbjct:   50 RCFAEWAQSYGPIISVWFGSTLNVIVSNSELAKEVLKEHDQLLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFSPKRLEALRPIREDEVTSMVDSVYNHCTSTENLGKGILLRKHLGVVAFNNITRLAFGKRFVNSE 196          
BLAST of FC920849 vs. ExPASy Swiss-Prot
Match: C71AI_ARATH (Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=CYP71A18 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.391e-13
Identity = 37/109 (33.94%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  205 HRNLSDLAKKYGDVLLLRMGQRNLVVVSSPDHAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQQRFNWEDEAARVVEDVKK 531
            HR+L  L+ +YG ++LL  G+  ++VVSS + A E+L T  ++F +R ++         G+D+VF  YGE+WR+M+ +  +   TNK+V       E+E   ++E ++K
Sbjct:   54 HRSLHSLSLRYGPLMLLHFGRVPILVVSSSEAAHEILKTHDLKFANRPKSKAVHGLMNGGRDVVFGPYGEYWRQMKSVCILNLLTNKMVASFEKVREEEVNAMMEKLEK 162          
The following BLAST results are available for this feature:
BLAST of FC920849 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
C71DC_CATRO9.860e-1429.22Tabersonine 16-hydroxylase (Fragment) OS=Catharant... [more]
C71A2_SOLME1.288e-1328.39Cytochrome P450 71A2 OS=Solanum melongena GN=CYP71... [more]
C71D9_SOYBN1.682e-1338.54Cytochrome P450 71D9 OS=Glycine max GN=CYP71D9 PE=... [more]
C71BL_ARATH1.682e-1331.61Cytochrome P450 71B21 OS=Arabidopsis thaliana GN=C... [more]
C71B8_ARATH1.682e-1330.57Cytochrome P450 71B8 OS=Arabidopsis thaliana GN=CY... [more]
C71AC_ARATH2.197e-1332.76Cytochrome P450 71A12 OS=Arabidopsis thaliana GN=C... [more]
C71BM_ARATH2.869e-1330.97Cytochrome P450 71B22 OS=Arabidopsis thaliana GN=C... [more]
C71C4_MAIZE4.894e-1333.13Cytochrome P450 71C4 OS=Zea mays GN=CYP71C4 PE=2 S... [more]
C98A2_SOYBN6.391e-1329.93Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=... [more]
C71AI_ARATH6.391e-1333.94Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=C... [more]

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Properties
Property NameValue
Genbank descriptionC32013G08EF RVDevelop1 Citrus clementina cDNA clone C32013G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920849 ID=FC920849; Name=FC920849; organism=Citrus clementina; type=EST; length=673bp
GGACCACTGGAGTCCCTGTATCTCATTACGTTAATCGTAAAGATGGATCT
CCTCTTGCTGGAAAAGACGCTTTTAGCCCTCTTCGCCGCCGTTGTTGTCG
CCATTACCGTCTCTAAACTCCGCGGAAAGCGCTTCAAGCTCCCCCCCGGC
CCCCTCCCCGTCCCCGTATTCGGCAACTGGCTCCAGGTCGGCGATGACTT
GAACCATCGGAACCTCTCCGACTTAGCCAAGAAATATGGAGATGTCCTCC
TCCTCCGCATGGGCCAGCGCAACCTCGTCGTCGTCTCGTCGCCGGACCAC
GCCAAGGAGGTTCTGCACACGCAGGGAGTGGAGTTCGGATCACGAACGAG
GAACGTCGTGTTCGATATCTTCACTGGGAAGGGCCAGGACATGGTGTTCA
CAGTGTACGGCGAGCACTGGCGGAAGATGCGGAGGATCATGACCGTCCCT
TTCTTCACGAACAAAGTGGTTCAGCAGCAGCGGTTTAATTGGGAAGACGA
GGCCGCTAGAGTCGTTGAGGATGTTAAGAAGGACCCCGAGGCGGCGACCA
ATGGGATCGTCTTGAGGAGGCGGCTGCAGCTTATGATGTACAACAACATG
TACAGGATTATGTTTGATAGAAGATTCGAGAGTCAGGATGATCCTTTGTT
TAACAGATTAAAGGCTTTGAATG
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