FC920853

Overview
NameFC920853
Unique NameFC920853
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14338 contig Ccv1_Contig14338:11..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: APTH1_ASHGO (Acyl-protein thioesterase 1 OS=Ashbya gossypii GN=AGL188W PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 40/111 (36.04%), Postives = 58/111 (52.25%), Query Frame = 3
Query:  240 HGLGDNGSSWSQLLETLP----LPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEPTD----IKLGVGGFSMGAATALYSATCFAH 548
            HGLGD+G+ W+ L E L     L + +++ PTAP RP+T     P+TAW DV         DLEG + +   V  L+  +        ++ +GGFS GAA  + +A  F H
Sbjct:   24 HGLGDSGAGWTFLAEYLQRDPALASAQFVFPTAPVRPITANNFAPATAWLDVRSWLSHESVDLEGFNESMKLVPKLIEEQVAQGIPYERIWIGGFSQGAALTMGTALSFPH 134          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: APTH1_DEBHA (Acyl-protein thioesterase 1 OS=Debaryomyces hansenii GN=DEHA2D06534g PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.413e-11
Identity = 43/153 (28.10%), Postives = 74/153 (48.37%), Query Frame = 3
Query:  219 QATVVWLHGLGDNGSSWSQLLETLPLPNI-------KWICPTAPTRPMTIFGGFPSTAWFDVGDL-SEDVPDDLEGLDAAAAHVVNLLSTE------PTDIKLGVGGFSMGAATALYSATCFAHGKYGNGNPYPAKLSAVVGLSGWLPCSKTL 635
            ++ ++++HGLGD+GS WS   +     NI        ++ P AP  P+T  GG+    WFD+ +  + +   D++G   +   + +L+  +      P D K+ +GGFS GAA +L +                 K+  VV LSG+ P  ++L
Sbjct:   18 KSAIIFVHGLGDSGSGWSWFPQLAKQSNIIKNCDSINYVFPNAPLMPITANGGYVMPGWFDIYEFGNPEAKQDIDGFHKSCETLKSLIKEQIDNHDIPAD-KIIIGGFSQGAAVSLATVALL-----------DFKVGGVVALSGFSPIKESL 158          
BLAST of FC920853 vs. ExPASy Swiss-Prot
Match: EST2_PSEFL (Carboxylesterase 2 OS=Pseudomonas fluorescens GN=estB PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 41/128 (32.03%), Postives = 67/128 (52.34%), Query Frame = 3
Query:  195 VVRPKGKHQATVVWLHGLGDNGSSWSQLLETLP--LPNIKWICPTAPTRPMTIFGGFPSTAWFDVGDLSEDVPDDLEGLDAAAAHVVNLLSTEP-TDI---KLGVGGFSMGAATALYSATCFAHGKYG 560
            +++P     A V+WLHGLG +   +  + E L   L   +++ P APTRP+TI GG+   +W+D+  +S      LE L+ +A  V +L+  +  T I   ++ + GFS G A   ++A     G  G
Sbjct:    6 ILQPAKPADACVIWLHGLGADRYDFMPVAEALQESLLTTRFVLPQAPTRPVTINGGYEMPSWYDIKAMSPARSISLEELEVSAKMVTDLIEAQKRTGIDASRIFLAGFSQGGAVVFHTAFINWQGPLG 133          
The following BLAST results are available for this feature:
BLAST of FC920853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
APTH1_ASHGO4.910e-1136.04Acyl-protein thioesterase 1 OS=Ashbya gossypii GN=... [more]
APTH1_DEBHA6.413e-1128.10Acyl-protein thioesterase 1 OS=Debaryomyces hansen... [more]
EST2_PSEFL8.376e-1132.03Carboxylesterase 2 OS=Pseudomonas fluorescens GN=e... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013G12EF RVDevelop1 Citrus clementina cDNA clone C32013G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920853 ID=FC920853; Name=FC920853; organism=Citrus clementina; type=EST; length=699bp
GGGGCAACGAGAGAGAACTCTCCTCGTGGAGTTATCACATAGCTCTGGAG
TTCTTCTTCTGGATCTGTGCTCTTCTCAGTTACTTTACCTGCATTGGTGA
TAATCTTTCAAGGGTTAAAATGAGCTTTACAGGGCCATCCATGAGTTCTG
GGGGTAATACTGTTAGAAGAGCAATTGAGTTCGGAAGGACCTATGTGGTC
AGGCCCAAAGGTAAACACCAAGCCACTGTTGTGTGGCTTCATGGGCTTGG
CGATAATGGTTCAAGCTGGTCCCAGCTCCTCGAGACTCTTCCTCTTCCAA
ATATTAAATGGATTTGCCCAACTGCCCCTACTCGACCAATGACTATATTT
GGCGGCTTTCCATCCACTGCCTGGTTTGATGTGGGAGACCTTTCAGAAGA
TGTTCCTGATGACTTAGAGGGTTTAGATGCTGCAGCTGCACATGTTGTGA
ATTTATTGTCCACTGAGCCCACTGACATTAAACTTGGTGTTGGAGGTTTC
AGTATGGGAGCAGCAACCGCACTGTACTCTGCAACCTGCTTTGCCCATGG
AAAATATGGGAATGGCAATCCATACCCTGCTAAATTGAGTGCAGTTGTAG
GACTGAGTGGCTGGCTTCCTTGCTCAAAGACCTTGAAGAACAACTAGGTG
GAGAAATGAAGCTAGAGACGTGCTGCATCCTGCCCATTTGCTCTGCATG
back to top