FC920857

Overview
NameFC920857
Unique NameFC920857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:52..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 276.559 bits (706), Expect = 8.327e-74
Identity = 135/166 (81.33%), Postives = 147/166 (88.55%), Query Frame = 2
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVL
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVL 169          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 8.327e-74
Identity = 135/166 (81.33%), Postives = 147/166 (88.55%), Query Frame = 2
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVL
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVL 169          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 8.327e-74
Identity = 135/166 (81.33%), Postives = 147/166 (88.55%), Query Frame = 2
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVL
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVL 169          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 8.327e-74
Identity = 137/167 (82.04%), Postives = 149/167 (89.22%), Query Frame = 2
Query:  173 GQET--DKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            G+ET  D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQISRV+KML DEFGTASNIKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D+KFGFIVMDGNG LFGTL GNTREVL
Sbjct:    3 GEETSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTASNIKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLADDNKFGFIVMDGNGALFGTLQGNTREVL 169          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_BOVIN (Eukaryotic peptide chain release factor subunit 1 OS=Bos taurus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 8.327e-74
Identity = 135/166 (81.33%), Postives = 147/166 (88.55%), Query Frame = 2
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D    D+N+EIWKIKKLIK+LE+ARGNGTSMISLI+PP+DQISRV KML DEFGTASNIKSRVNR SVL AITS QQRLKLYNKVPPNGLV+Y GT+VT++GKEKKV IDFEPFKPIN SLYLCDNKFHTEAL  LL  D KFGFIV+DG+G LFGTL GNTREVL
Sbjct:    4 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVL 169          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_CAEEL (Eukaryotic peptide chain release factor subunit 1 OS=Caenorhabditis elegans GN=erf-1 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 9.527e-70
Identity = 126/169 (74.56%), Postives = 145/169 (85.80%), Query Frame = 2
Query:  161 TMSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            T       D+N+E+WKIK+LIK+LE ARGNGTSMISLI+PP+DQ++R+ +ML +E+GTASNIKSRVNR SVL AITS Q RLKLYNKVPPNGLV+Y GT++TD+GKEKKV IDFEPFK IN SLYLCDNKFHTEAL  LL  D+KFGFI+MDGNG LFGTL GNTREVL
Sbjct:    9 TAGGDDAADRNVEMWKIKRLIKSLELARGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKSRVNRLSVLGAITSVQGRLKLYNKVPPNGLVVYCGTIMTDEGKEKKVNIDFEPFKAINTSLYLCDNKFHTEALQGLLADDNKFGFIIMDGNGCLFGTLQGNTREVL 177          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_YEAST (Eukaryotic peptide chain release factor subunit 1 OS=Saccharomyces cerevisiae GN=SUP1 PE=1 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 5.780e-67
Identity = 121/163 (74.23%), Postives = 142/163 (87.12%), Query Frame = 2
Query:  179 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            E +KNIEIWK+KKL+++LE ARGNGTSMISL++PP+  I    KML DE+GTASNIKSRVNR SVL+AITS QQ+LKLYN +P NGLVLY G ++T+DGKEKKVT D EP+KPIN SLYLCDNKFHTE L+ELL++DDKFGFIVMDG GTLFG++SGNTR VL
Sbjct:    4 EVEKNIEIWKVKKLVQSLEKARGNGTSMISLVIPPKGLIPLYQKMLTDEYGTASNIKSRVNRLSVLSAITSTQQKLKLYNTLPKNGLVLYCGDIITEDGKEKKVTFDIEPYKPINTSLYLCDNKFHTEVLSELLQADDKFGFIVMDGQGTLFGSVSGNTRTVL 166          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 5.780e-67
Identity = 127/168 (75.60%), Postives = 141/168 (83.93%), Query Frame = 2
Query:  164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            + D Q  DK +E WKIKKLIK LE+ARGNGTSMISLI+ P DQI++V KML +E+GTASNIKSRVNR SVL AITSAQQRLKLY KVP NGLV+Y GT+VTD+GKEK V ID EPFKPIN SLYLCDNKFHT  L ELLESD+KFGFIV+DGNG LFG L G+TR VL
Sbjct:    4 VDDQQNADKQVEQWKIKKLIKNLEAARGNGTSMISLIIRPGDQIAKVNKMLAEEYGTASNIKSRVNRLSVLGAITSAQQRLKLYTKVPDNGLVIYCGTMVTDEGKEKPVRIDIEPFKPINTSLYLCDNKFHTAPLGELLESDEKFGFIVVDGNGALFGLLCGSTRTVL 171          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_CRYHO (Eukaryotic peptide chain release factor subunit 1 OS=Cryptosporidium hominis GN=erf1 PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.682e-66
Identity = 116/163 (71.17%), Postives = 144/163 (88.34%), Query Frame = 2
Query:  179 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            + D N++ WK+++LI  LE+ARGNGTSMISL++ P+D+ISR++KML DE+GTASNIKSRVNR SVL+AITS QQRLKLYN+ P NGLV+Y GT++T+DGKEKKV IDFEPFKPIN SLYLCDNKFH +AL ELLE+DDKFGFI++DGNG L+G + G++REVL
Sbjct:    3 DNDTNVKQWKVRRLIATLEAARGNGTSMISLVIKPKDEISRISKMLADEYGTASNIKSRVNRLSVLSAITSTQQRLKLYNRTPQNGLVVYCGTLITEDGKEKKVNIDFEPFKPINTSLYLCDNKFHVDALKELLETDDKFGFIIVDGNGALYGVVQGSSREVL 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_SCHPO (Eukaryotic peptide chain release factor subunit 1 OS=Schizosaccharomyces pombe GN=sup45 PE=1 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 8.938e-60
Identity = 111/164 (67.68%), Postives = 136/164 (82.93%), Query Frame = 2
Query:  176 QETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            +  +K IEIWKI++L+K L +  GNGTSMI+LI+PP +QISR + ML +E+GTASNIKSRVNR SVL+AITS ++RLKLYNKVP NGLV+Y G V+ +  K +K+ IDFEPFKPIN S YLCDNKFHTEAL ELLESD +FGFIVMDG+ TL+G +SG+ REVL
Sbjct:    3 ETAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASNIKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQRFGFIVMDGHQTLYGVVSGSAREVL 166          
The following BLAST results are available for this feature:
BLAST of FC920857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_MOUSE8.327e-7481.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU8.327e-7481.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN8.327e-7481.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME8.327e-7482.04Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BOVIN8.327e-7481.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CAEEL9.527e-7074.56Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_YEAST5.780e-6774.23Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DICDI5.780e-6775.60Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_CRYHO1.682e-6671.17Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_SCHPO8.938e-6067.68Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32013H05EF RVDevelop1 Citrus clementina cDNA clone C32013H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920857 ID=FC920857; Name=FC920857; organism=Citrus clementina; type=EST; length=669bp
GGCGGCCAAGGGACGGGATTCTCCTCCTTTAGAGATTTGTCATTGGAGGT
CTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCCG
TCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTCA
ACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAGA
TATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAAT
GGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTCG
GGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAAA
GTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCAG
AGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATAC
TGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGACT
TTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAAG
TTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGACAAATTTGG
GTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGAA
ACACAAGAGAGGTGCTTCA
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