FC920857

Overview
NameFC920857
Unique NameFC920857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:52..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_BLEAM (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma americanum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 4.590e-56
Identity = 103/168 (61.31%), Postives = 138/168 (82.14%), Query Frame = 2
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLY-NKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            +G E  +NIE WKIK+LI  L+ ARGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V +A+TS ++RLKLY N++P NGL+LY G V+ ++G  EKK TIDF+P++ IN +LY+CDNKFHT+ L +LL  DDKFGFI++DGNGTLFGTL GNT+EVL
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGTLFGTLQGNTKEVL 169          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_BLEMU (Eukaryotic peptide chain release factor subunit 1 OS=Blepharisma musculus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 7.830e-56
Identity = 103/168 (61.31%), Postives = 137/168 (81.55%), Query Frame = 2
Query:  170 DGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLY-NKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            +G E  +NIE WKIK+LI  L+ ARGNGTS+ISLI+PPR+Q+  + KM+ +E+G +SNIKSR+ RQ+V +A+TS ++RLKLY N++P NGL+LY G V+ ++G  EKK TIDF+P++ IN +LY+CDNKFHT+ L +LL  DDKFGFI++DGNG LFGTL GNTREVL
Sbjct:    2 EGDELTQNIEQWKIKRLIDNLDKARGNGTSLISLIIPPREQLPIINKMITEEYGKSSNIKSRIVRQAVQSALTSTKERLKLYNNRLPANGLILYCGEVINEEGVCEKKYTIDFQPYRAINTTLYICDNKFHTQPLKDLLVMDDKFGFIIIDGNGALFGTLQGNTREVL 169          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_TRYBB (Eukaryotic peptide chain release factor subunit 1 OS=Trypanosoma brucei brucei GN=ERF1 PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.633e-53
Identity = 100/163 (61.35%), Postives = 133/163 (81.60%), Query Frame = 2
Query:  179 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            E++K IE +K+KKLI+ LESARG GTS+IS+ M P++QIS +   L +E+GTASNIKS  N+ SV +AIT++  RLK YN++PPNGL+LY GTV+T + KEKK+T+D EPFKP++ SLYLCDNKFHTE L+ +LESD+KFGFIV+DG+GT + TL G+ +E L
Sbjct:    8 ESEKAIERYKVKKLIQMLESARGMGTSVISIYMTPKEQISGMVTKLNNEYGTASNIKSHTNKLSVQSAITASLGRLKQYNRLPPNGLLLYCGTVLTAENKEKKLTLDIEPFKPVSRSLYLCDNKFHTEELHRMLESDEKFGFIVVDGSGTTYATLCGSVKEKL 170          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_TETTH (Eukaryotic peptide chain release factor subunit 1 OS=Tetrahymena thermophila GN=ERF1 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 6.859e-52
Identity = 98/168 (58.33%), Postives = 125/168 (74.40%), Query Frame = 2
Query:  164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            M +  +  +NIE +KIKKL+  L + RG+GTSM+SLI+PP+ QI+  TK++ DEF  A+NIK RVNRQSV  A+ SA QRLKLY + P NGL+LY G V+ ++GKE K+ IDFEP+KPIN SLY CD+KFH + L  LLE+D  FGFIVMDG G L+  L GNT+ VL
Sbjct:    1 MEEKDQRQRNIEHFKIKKLMTRLRNTRGSGTSMVSLIIPPKKQINDSTKLISDEFSKATNIKDRVNRQSVQDAMVSALQRLKLYQRTPNNGLILYCGKVLNEEGKEIKLLIDFEPYKPINTSLYFCDSKFHVDELGSLLETDPPFGFIVMDGQGALYANLQGNTKTVL 168          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_OXYTR (Eukaryotic peptide chain release factor subunit 1 OS=Oxytricha trifallax GN=ERF1 PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.958e-52
Identity = 98/173 (56.65%), Postives = 128/173 (73.99%), Query Frame = 2
Query:  155 VPTMSDGQETD-KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            V +++ GQ +D K+IE+WK+KKLI  LE  +GNGTSM+SLI+PP+D I++  K+L  E   A NIKSR+ +QSV+ AITS +++LKLY + P NGL LY G +  +DGK EKK+  DFEPF+PIN  LY C  KF TE L  LL  DDKFGFI++DGNG L+ TL GN+RE+L
Sbjct:    2 VESIAAGQVSDNKHIEMWKVKKLISKLEHCKGNGTSMVSLIIPPKDDINKYGKLLTGEMSAAQNIKSRITKQSVVTAITSTKEKLKLYKQTPTNGLCLYCGVIYMEDGKTEKKINFDFEPFRPINQFLYFCGGKFQTEPLLSLLADDDKFGFIIVDGNGALYATLQGNSREIL 174          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_GIALA (Eukaryotic peptide chain release factor subunit 1 OS=Giardia lamblia GN=ERF1 PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.528e-51
Identity = 99/176 (56.25%), Postives = 133/176 (75.57%), Query Frame = 2
Query:  140 LQFQPVPTMSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            +   P    S+G++ ++ I IW++K+ I+ LES  G+GTS+ISL++PP +Q+S VT ML +E+GTASNIKSRVN+ +VL+AITSA  RLKLYN++PPNGL +Y G  + +DGK  KV ID+ P+KPI+  +YLCD+KFHTE L ELL +DD FGFI+MDG  TL  TLSG  R +L
Sbjct:    1 MSINPDAPQSNGEQ-ERQIAIWQLKRTIEKLESYTGSGTSVISLLIPPGEQLSSVTGMLTNEYGTASNIKSRVNKNAVLSAITSAMSRLKLYNRLPPNGLAVYCGE-IEEDGKNTKVVIDYTPYKPISNFIYLCDSKFHTEHLRELLTNDDTFGFIIMDGKETLMATLSGTVRTIL 174          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_DIDNA (Eukaryotic peptide chain release factor subunit 1 OS=Didinium nasutum GN=eRF1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.528e-51
Identity = 97/163 (59.51%), Postives = 129/163 (79.14%), Query Frame = 2
Query:  179 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            E ++N+E++++K+LI  LES +G+GTSMI+LI+  +DQI+   +ML +E G ASNIKSRV RQ+V  A+TS  ++LKLYNK PPNGLV++ G V  +DG EK + ID EPFKPIN +LY CD+ FHTE + +LLE +DKFGFI+MDGNG+LFGTL G+TR VL
Sbjct:    9 EYERNVEMFRLKRLIAKLESMKGSGTSMITLIINFKDQINIHARMLAEEVGKASNIKSRVTRQNVTDALTSTLEKLKLYNKTPPNGLVIFCGLVQQEDGGEKMIKIDLEPFKPINTTLYKCDSVFHTEEVRKLLEDNDKFGFIIMDGNGSLFGTLQGSTRTVL 171          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_STYMT (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia mytilus GN=ERF1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.404e-51
Identity = 96/173 (55.49%), Postives = 129/173 (74.57%), Query Frame = 2
Query:  155 VPTMSDGQETD-KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            V +++ GQ  D K+IE+WKIK+LI  LE+ +GNGTSM+SLI+PP++ I++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G ++ +DGK EKK+  DFEPF+PIN  +Y C  KF TE L  LL  DDKFGFI++DGNG L+ TL GN+RE+L
Sbjct:    2 VESIAAGQVGDNKHIEMWKIKRLINKLENCKGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNSREIL 174          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_STYLE (Eukaryotic peptide chain release factor subunit 1 OS=Stylonychia lemnae GN=ERF1 PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.404e-51
Identity = 96/173 (55.49%), Postives = 129/173 (74.57%), Query Frame = 2
Query:  155 VPTMSDGQETD-KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            V +++ GQ  D K+IE+WKIK+LI  LE+ +GNGTSM+SLI+PP++ I++  K+L  E   A NIKSR+ RQSV+ AITS +++LKLY + P NGL +Y G ++ +DGK EKK+  DFEPF+PIN  +Y C  KF TE L  LL  DDKFGFI++DGNG L+ TL GN+RE+L
Sbjct:    2 VESIAAGQVGDNKHIEMWKIKRLINKLENCKGNGTSMVSLIIPPKEDINKSGKLLVGELSAAQNIKSRITRQSVITAITSTKEKLKLYRQTPTNGLCIYCGVILMEDGKTEKKINFDFEPFRPINQFMYFCGGKFQTEPLTTLLADDDKFGFIIVDGNGALYATLQGNSREIL 174          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_DILMA (Eukaryotic peptide chain release factor subunit 1 OS=Dileptus margaritifer GN=eRF1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.025e-47
Identity = 91/163 (55.83%), Postives = 123/163 (75.46%), Query Frame = 2
Query:  179 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            E ++++E++++KKLI  L++ +G+GTSMISLI+  +DQI+   KML DE G ASNIKSRV RQ+V  A+TS  ++LKLYNK P NGL++Y G     D  EK   ID EPFKPIN SLY CD+ FHTE + +LLE +D+FGF++MDGNG+LFG++ G TR V+
Sbjct:    9 EYERSVEMFRLKKLIHKLDNLKGSGTSMISLIINYKDQINPFMKMLVDEVGKASNIKSRVTRQNVTDALTSTMEKLKLYNKTPNNGLIIYCGLASEGDSGEKMFKIDMEPFKPINTSLYRCDSVFHTEEVKKLLEDNDRFGFLIMDGNGSLFGSVQGATRTVI 171          
The following BLAST results are available for this feature:
BLAST of FC920857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_BLEAM4.590e-5661.31Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_BLEMU7.830e-5661.31Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TRYBB1.633e-5361.35Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_TETTH6.859e-5258.33Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_OXYTR8.958e-5256.65Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_GIALA1.528e-5156.25Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DIDNA1.528e-5159.51Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYMT3.404e-5155.49Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_STYLE3.404e-5155.49Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DILMA1.025e-4755.83Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32013H05EF RVDevelop1 Citrus clementina cDNA clone C32013H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920857 ID=FC920857; Name=FC920857; organism=Citrus clementina; type=EST; length=669bp
GGCGGCCAAGGGACGGGATTCTCCTCCTTTAGAGATTTGTCATTGGAGGT
CTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCCG
TCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTCA
ACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAGA
TATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAAT
GGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTCG
GGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAAA
GTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCAG
AGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATAC
TGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGACT
TTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAAG
TTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGACAAATTTGG
GTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGAA
ACACAAGAGAGGTGCTTCA
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