FC920857

Overview
NameFC920857
Unique NameFC920857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:52..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: ERF1_LOXST (Eukaryotic peptide chain release factor subunit 1 OS=Loxodes striatus GN=eRF1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.820e-43
Identity = 82/164 (50.00%), Postives = 120/164 (73.17%), Query Frame = 2
Query:  179 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGK-EKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            E +  I+ WKI++LI+ LE A+GNGTS+ISLI+PP++QIS + + L D  G A NIKS+  +++V  AI S +Q+L +  ++PPNGL+LY G  + +D K EK++    EP + IN + +LC+N F+T+ L ++L+  DKFGFI+MDGNG+LFGTL GN RE+L
Sbjct:    4 EQEDAIKGWKIRRLIEYLEKAKGNGTSLISLIIPPKEQISLINQKLTDAHGRAQNIKSKAVQKAVQDAIISTKQKLSVIKQIPPNGLILYCGKFIGEDEKTEKQILEVLEPLRAINTTFFLCENTFYTQPLRDMLQEQDKFGFIIMDGNGSLFGTLQGNAREIL 167          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_THEVO (Peptide chain release factor subunit 1 OS=Thermoplasma volcanium GN=prf1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.644e-29
Identity = 67/161 (41.61%), Postives = 95/161 (59.01%), Query Frame = 2
Query:  185 DKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            D+ I  ++ K+ ++ L    G GT +ISL +PP  QIS V   L DE+ T+SNIKS+  R++VLAAI S   RLK Y   PPNGLV + G + T   + +  T   EP +PI   +Y CD++FHTE L  +L+  + +G IV+D      G L+G   EV+
Sbjct:    7 DEQIRRYEFKRALEELSKLHGRGTELISLYIPPEKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYRFPPPNGLVFFVGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHTEMLKAMLDEKEIYGLIVIDRKEATVGFLNGTRIEVV 167          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_THEAC (Peptide chain release factor subunit 1 OS=Thermoplasma acidophilum GN=prf1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.247e-29
Identity = 67/163 (41.10%), Postives = 94/163 (57.67%), Query Frame = 2
Query:  179 ETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            E D+ I  ++ K+ ++ L    G GT +ISL +PP  QIS V   L DE+ T+SNIKS+  R++VLAAI S   RLK Y   PPNG V + G + T   + +  T   EP +PI   +Y CD++FH E L  +LE  + +G IV+D      G L+G   EV+
Sbjct:    5 EDDEQIRRYEFKRALEELSKLHGRGTELISLYIPPDKQISDVVAYLRDEYSTSSNIKSKSTRKNVLAAIESIMARLKYYKTPPPNGFVFFEGHIATRGDQTEMYTKIIEPPEPITTFMYKCDSEFHLEMLKTMLEEKEIYGLIVIDRKEATVGFLNGTRIEVV 167          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METKA (Peptide chain release factor subunit 1 OS=Methanopyrus kandleri GN=prf1 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.539e-27
Identity = 63/156 (40.38%), Postives = 96/156 (61.54%), Query Frame = 2
Query:  194 IEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 661
            +E ++ +K+I+ LE+ RG GT +I++ +PP +++S V   + +E+  ASNIKS+  R++V +AI    QRLK+  + P NGLV+  GT V D  KEK V    EP +P++  +Y CD+KF+ E L E LE  D +G +VMD      G + G   E
Sbjct:    7 VERYRFRKMIERLENLRGQGTELITIYIPPENRLSDVIAQMREEYSQASNIKSKRTRKNVQSAIEVVMQRLKMVGETPENGLVVLVGT-VQDGTKEKMVAELIEPPEPVDRFIYRCDSKFYLEPLKEYLEEKDVYGILVMDRREATIGLVKGKRIE 161          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_PYRKO (Peptide chain release factor subunit 1 OS=Pyrococcus kodakaraensis GN=prf1 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.010e-27
Identity = 63/160 (39.38%), Postives = 93/160 (58.13%), Query Frame = 2
Query:  188 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            K+ E++++KK ++ L+S RG  T ++SL +P    I++V + L +E+GTA NIKS+  R++VL A+  A Q LKLY + P NGL L+ G V   +G          P +P+N  LY CD  F TE L E+L   D +G I ++ N    G L G   EV+
Sbjct:    4 KSAEMYELKKKVEELKSYRGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVI 163          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_THEON (Peptide chain release factor subunit 1 OS=Thermococcus onnurineus (strain NA1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.428e-27
Identity = 63/160 (39.38%), Postives = 92/160 (57.50%), Query Frame = 2
Query:  188 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            K+ E++++KK ++ L+S RG  T ++SL +P    I++V + L +E+GTA NIKS+  R++VL A+  A Q LKLY K P NGL L+ G V   +G          P +P+   LY CD  F TE L E+L   D +G I ++ N    G L G   EV+
Sbjct:    4 KSAEMYELKKKVEELKSYRGRATELVSLYIPAGYDINKVMQQLREEYGTAQNIKSKSTRKNVLGALERAMQHLKLYRKTPENGLALFVGNVSEQEGVSDIKLWAIVPPEPLKVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVI 163          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_PYRAB (Peptide chain release factor subunit 1 OS=Pyrococcus abyssi GN=prf1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.847e-27
Identity = 64/162 (39.51%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  182 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            T  + +++++KK I+ L+  RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VL A+  A Q LKLY + P NGL L+ G V   +G          P +P+N  LY CD  F TE L E+L   D +G I ++ N    G L G   EVL
Sbjct:    5 TRHDAQLYELKKKIEELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGNTDIRLWAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIEVL 166          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_THESM (Peptide chain release factor subunit 1 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=prf1 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 9.974e-27
Identity = 60/160 (37.50%), Postives = 91/160 (56.88%), Query Frame = 2
Query:  188 KNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            K+ E++++KK ++ L+  RG  T ++SL +P    +++V + L +E+GTA NIKS+  R++VL A+  A Q LKLY + P  GL L+ G V   +G          P +P+N  LY CD  F TE L E+L   D +G I ++ N    G L G   EV+
Sbjct:    4 KSAEMYELKKKVEELKKIRGRATELVSLYIPADYDLNKVMQQLREEYGTAQNIKSKTTRKNVLGALERAMQHLKLYRQTPETGLALFVGNVSEQEGVSDIRVFAIVPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGILRGKKIEVI 163          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_PYRHO (Peptide chain release factor subunit 1 OS=Pyrococcus horikoshii GN=prf1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  182 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            T  + +++++KK I+ L+  RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VL A+  A Q LKLY + P NGL L+ G V   +G          P +P+N  LY CD  F TE L E+L   D +G I ++ N    G L G   E+L
Sbjct:    5 TRHDAQLYELKKKIEELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEIEGNTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKDAYGLITVEKNEATIGLLRGKRIELL 166          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_PYRFU (Peptide chain release factor subunit 1 OS=Pyrococcus furiosus GN=prf1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 63/162 (38.89%), Postives = 92/162 (56.79%), Query Frame = 2
Query:  182 TDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            T ++ +++++KK I  L+  RG GT +ISL +P    +S+V + L +E+ TA NIKS+  R++VL A+  A Q LKLY + P NGL L+ G V   +G          P +P+N  LY CD  F TE L E+L   + +G I ++ N    G L G   EVL
Sbjct:    5 TSRDAQLYELKKKIDELKKIRGRGTELISLYIPAGYDLSKVMQQLREEYSTAQNIKSKTTRKNVLGALERAMQHLKLYKQTPENGLALFVGNVSEMEGVTDIRLWAIIPPEPLNVRLYRCDQTFVTEPLEEMLRVKEAYGLITVEKNEATIGILRGKRIEVL 166          
The following BLAST results are available for this feature:
BLAST of FC920857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1_LOXST5.820e-4350.00Eukaryotic peptide chain release factor subunit 1 ... [more]
RF1_THEVO1.644e-2941.61Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_THEAC6.247e-2941.10Peptide chain release factor subunit 1 OS=Thermopl... [more]
RF1_METKA1.539e-2740.38Peptide chain release factor subunit 1 OS=Methanop... [more]
RF1_PYRKO2.010e-2739.38Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_THEON3.428e-2739.38Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_PYRAB5.847e-2739.51Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_THESM9.974e-2737.50Peptide chain release factor subunit 1 OS=Thermoco... [more]
RF1_PYRHO1.701e-2638.89Peptide chain release factor subunit 1 OS=Pyrococc... [more]
RF1_PYRFU1.701e-2638.89Peptide chain release factor subunit 1 OS=Pyrococc... [more]

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Properties
Property NameValue
Genbank descriptionC32013H05EF RVDevelop1 Citrus clementina cDNA clone C32013H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920857 ID=FC920857; Name=FC920857; organism=Citrus clementina; type=EST; length=669bp
GGCGGCCAAGGGACGGGATTCTCCTCCTTTAGAGATTTGTCATTGGAGGT
CTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCCG
TCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTCA
ACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAGA
TATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAAT
GGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTCG
GGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAAA
GTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCAG
AGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATAC
TGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGACT
TTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAAG
TTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGACAAATTTGG
GTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGAA
ACACAAGAGAGGTGCTTCA
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