FC920857

Overview
NameFC920857
Unique NameFC920857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:52..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_PICTO (Peptide chain release factor subunit 1 OS=Picrophilus torridus GN=prf1 PE=3 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26
Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 2
Query:  203 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            ++ KK ++ L+   G GT +ISL +PP  QIS V + L +E+ T+SNIKS+  R++VLAAI S   RLK Y + P  GLV + G + T   + +  T   EP +PI   +Y CD+ FH E L   L+  D +G IV+D      G L G   EV+
Sbjct:    9 YEFKKALEELKDLHGRGTELISLYIPPDKQISDVVQYLREEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYKQPPETGLVFFVGHIATRGDQTEMYTKIIEPPEPIQTFMYKCDSNFHLEQLESQLKEKDIYGLIVIDRKEATVGFLKGTRIEVV 163          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.465e-26
Identity = 59/158 (37.34%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            EI+++KK +K LE  +G GT ++S+ +PP  QIS V K + DE G ++NIKS+  R++V +AI    QRLKL+ K P  GLV++ G +     G EK  T  F+P + +    Y CD++F  E L +++E  + +G +V+D   +   TL G   +++
Sbjct:    8 EIYEVKKTLKELEDKKGRGTELVSVYIPPEKQISDVAKQMRDELGQSANIKSKQTRKNVQSAIEVIIQRLKLFPKPPEKGLVMFVGMIPKGGPGTEKMETYVFQPPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRGKRIDII 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.335e-25
Identity = 59/158 (37.34%), Postives = 93/158 (58.86%), Query Frame = 2
Query:  197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            E+++ K+ ++ L   RG GT ++S+ +PP  QIS V K + +E   ++NIKS+  +++V +AI    QRLKL+ K P  GLV++ G V     G EK  T  FEP +PI   +Y C+++F+ E L E+LE  + +G  V+D       TL G   ++L
Sbjct:    8 ELFEFKRTLQELSDKRGRGTELVSVYIPPDRQISDVAKHMREELSQSANIKSKQTKKNVQSAIEVIMQRLKLFPKPPEKGLVMFVGMVPRGGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKGKRIDIL 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24
Identity = 60/158 (37.97%), Postives = 89/158 (56.33%), Query Frame = 2
Query:  197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            E++K KK +K L   +G GT ++S+ +P   QIS V K + DE G ++NIKS+  R++V +AI    QR++L+   P NGLVL+ G +     G EK  T  FEP +PI    Y C+N+F  E L  ++E  + +G  V+D       TL G    +L
Sbjct:    8 ELYKFKKTLKELSEKKGRGTELVSVYIPHDKQISDVGKQMRDELGQSANIKSKQTRKNVQSAIEVIMQRIRLFKAAPENGLVLFVGMIPRGGPGTEKMETYVFEPPEPITTYWYQCNNEFFLEPLEYMIEERETYGLAVIDRKEATIATLRGKKVNIL 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.592e-24
Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 2
Query:  200 IWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            +++ K+ ++ LE  +G GT +I+L +PP   I+ V+  L  E   ASNIKS+  R +VLA I +   RLK + K P NG+V+ +G VV  +GKEK +T   EP +P+    Y CD+KF+ + L E+L     +G IV+D      G L G   EVL
Sbjct:    6 MYEFKRKLEELEKYKGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKGKRIEVL 160          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.299e-23
Identity = 60/158 (37.97%), Postives = 92/158 (58.23%), Query Frame = 2
Query:  197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVV-TDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            +++  KK++K L+S +G GT +ISL +P   +IS V + L +E   ASNIKS+  R++V +AI +  QRLKL  +    G+V++ G V  +  G EK  T   EP +PI   +Y CD++F+ E L E LE  D +G I++D N      + G    +L
Sbjct:    8 QLYLFKKMLKELKSKKGKGTELISLYIPAGRRISDVAQHLREEMSQASNIKSKSTRKNVQSAIEAILQRLKLLKEPLEKGVVIFAGMVPRSGPGTEKMETYVIEPPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKGRNINIL 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.336e-22
Identity = 57/151 (37.75%), Postives = 82/151 (54.30%), Query Frame = 2
Query:  197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSG 649
            E ++ KK ++ L   +G  T +ISL +PP  QI  VT  L DE G A+NIKS++ R +V  AI S   RL+  +KVP NG+V +TG V     K    +    P  PI    Y CD+ F+ E L ++L+  + +G +V+D      G L G
Sbjct:    8 EKYEFKKKLEGLRDKKGRSTELISLYIPPDKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIVPPDPITVYKYHCDSSFYLEPLEDMLKDKNTYGLLVLDRREATIGLLVG 158          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22
Identity = 58/167 (34.73%), Postives = 93/167 (55.69%), Query Frame = 2
Query:  167 SDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 661
            +D ++   +   ++ +K+I+ L    G+GT ++++ +PP  Q+S V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+VL++G V T  G+   VT   E P +P+ +  Y CD+ F T+ L ++L     FG IV+D      G L G   E
Sbjct:    3 TDAEDVSNDRRKYEFRKVIEELREYEGSGTQLVTIYIPPDRQVSDVVAHITQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTYPPDNGIVLFSGAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKGKRVE 169          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21
Identity = 59/167 (35.33%), Postives = 91/167 (54.49%), Query Frame = 2
Query:  167 SDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 661
            SD QE   +   ++ +K+I+ L    G+GT ++++ +P   Q+S V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+V+++G +    G+   VT   E P +P+ +  Y CD+ F TE L  +LE    FG IV+D      G L G   E
Sbjct:    3 SDAQEASDDRRKYEFRKVIEELRDFEGSGTQLVTIYIPEDRQVSDVVAHVTQEHSEASNIKSKQTRTAVQDALTSIKDRLRYYDTFPPENGMVIFSGAIDAGGGQTDMVTRTLESPPQPVESFRYHCDSAFLTEPLEHMLEDSGLFGLIVLDRREANVGWLKGKRVE 169          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF11_METAC (Peptide chain release factor subunit 1-1 OS=Methanosarcina acetivorans GN=prf11 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21
Identity = 57/151 (37.75%), Postives = 82/151 (54.30%), Query Frame = 2
Query:  197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSG 649
            E ++ KK +++L   +G  T +ISL +P   QI  VT  L DE G A+NIKS++ R +V  AI S   RL+  +KVP NG+V +TG V     K    +    P +PI    Y CD+ F+ E L ++L+    FG +V+D      G L G
Sbjct:    8 EKYEFKKKLESLRDKKGRSTELISLYIPADKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIIPPEPITVYKYHCDSSFYLEPLEDMLKDKSTFGLLVLDRREATIGLLVG 158          
The following BLAST results are available for this feature:
BLAST of FC920857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_PICTO1.701e-2640.65Peptide chain release factor subunit 1 OS=Picrophi... [more]
RF1_METST6.465e-2637.34Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_METTH9.335e-2537.34Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_METS31.219e-2437.97Peptide chain release factor subunit 1 OS=Methanob... [more]
RF1_ARCFU1.592e-2439.74Peptide chain release factor subunit 1 OS=Archaeog... [more]
RF1_METJA2.299e-2337.97Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METMA4.336e-2237.75Peptide chain release factor subunit 1 OS=Methanos... [more]
RF1_HALWD5.663e-2234.73Peptide chain release factor subunit 1 OS=Haloquad... [more]
RF1_HALLT1.262e-2135.33Peptide chain release factor subunit 1 OS=Halorubr... [more]
RF11_METAC1.262e-2137.75Peptide chain release factor subunit 1-1 OS=Methan... [more]

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Properties
Property NameValue
Genbank descriptionC32013H05EF RVDevelop1 Citrus clementina cDNA clone C32013H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920857 ID=FC920857; Name=FC920857; organism=Citrus clementina; type=EST; length=669bp
GGCGGCCAAGGGACGGGATTCTCCTCCTTTAGAGATTTGTCATTGGAGGT
CTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCCG
TCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTCA
ACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAGA
TATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAAT
GGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTCG
GGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAAA
GTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCAG
AGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATAC
TGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGACT
TTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAAG
TTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGACAAATTTGG
GTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGAA
ACACAAGAGAGGTGCTTCA
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