FC920857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_PICTO (Peptide chain release factor subunit 1 OS=Picrophilus torridus GN=prf1 PE=3 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.701e-26 Identity = 63/155 (40.65%), Postives = 89/155 (57.42%), Query Frame = 2 Query: 203 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 ++ KK ++ L+ G GT +ISL +PP QIS V + L +E+ T+SNIKS+ R++VLAAI S RLK Y + P GLV + G + T + + T EP +PI +Y CD+ FH E L L+ D +G IV+D G L G EV+ Sbjct: 9 YEFKKALEELKDLHGRGTELISLYIPPDKQISDVVQYLREEYSTSSNIKSKSTRKNVLAAIESIMSRLKYYKQPPETGLVFFVGHIATRGDQTEMYTKIIEPPEPIQTFMYKCDSNFHLEQLESQLKEKDIYGLIVIDRKEATVGFLKGTRIEVV 163
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METST (Peptide chain release factor subunit 1 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=prf1 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.465e-26 Identity = 59/158 (37.34%), Postives = 95/158 (60.13%), Query Frame = 2 Query: 197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 EI+++KK +K LE +G GT ++S+ +PP QIS V K + DE G ++NIKS+ R++V +AI QRLKL+ K P GLV++ G + G EK T F+P + + Y CD++F E L +++E + +G +V+D + TL G +++ Sbjct: 8 EIYEVKKTLKELEDKKGRGTELVSVYIPPEKQISDVAKQMRDELGQSANIKSKQTRKNVQSAIEVIIQRLKLFPKPPEKGLVMFVGMIPKGGPGTEKMETYVFQPPEAVQTYTYHCDSQFFVEPLKQIIEYKEVYGVVVLDRKESTIATLRGKRIDII 165
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METTH (Peptide chain release factor subunit 1 OS=Methanobacterium thermoautotrophicum GN=prf1 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 9.335e-25 Identity = 59/158 (37.34%), Postives = 93/158 (58.86%), Query Frame = 2 Query: 197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 E+++ K+ ++ L RG GT ++S+ +PP QIS V K + +E ++NIKS+ +++V +AI QRLKL+ K P GLV++ G V G EK T FEP +PI +Y C+++F+ E L E+LE + +G V+D TL G ++L Sbjct: 8 ELFEFKRTLQELSDKRGRGTELVSVYIPPDRQISDVAKHMREELSQSANIKSKQTKKNVQSAIEVIMQRLKLFPKPPEKGLVMFVGMVPRGGPGTEKMETYVFEPPEPIKTYIYHCNSEFYLEPLREMLEEKETYGLAVLDRKEATIATLKGKRIDIL 165
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METS3 (Peptide chain release factor subunit 1 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=prf1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 1.219e-24 Identity = 60/158 (37.97%), Postives = 89/158 (56.33%), Query Frame = 2 Query: 197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 E++K KK +K L +G GT ++S+ +P QIS V K + DE G ++NIKS+ R++V +AI QR++L+ P NGLVL+ G + G EK T FEP +PI Y C+N+F E L ++E + +G V+D TL G +L Sbjct: 8 ELYKFKKTLKELSEKKGRGTELVSVYIPHDKQISDVGKQMRDELGQSANIKSKQTRKNVQSAIEVIMQRIRLFKAAPENGLVLFVGMIPRGGPGTEKMETYVFEPPEPITTYWYQCNNEFFLEPLEYMIEERETYGLAVIDRKEATIATLRGKKVNIL 165
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_ARCFU (Peptide chain release factor subunit 1 OS=Archaeoglobus fulgidus GN=prf1 PE=3 SV=1) HSP 1 Score: 112.849 bits (281), Expect = 1.592e-24 Identity = 62/156 (39.74%), Postives = 91/156 (58.33%), Query Frame = 2 Query: 200 IWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 +++ K+ ++ LE +G GT +I+L +PP I+ V+ L E ASNIKS+ R +VLA I + RLK + K P NG+V+ +G VV +GKEK +T EP +P+ Y CD+KF+ + L E+L +G IV+D G L G EVL Sbjct: 6 MYEFKRKLEELEKYKGRGTELITLYIPPDKNIADVSNQLRSELSQASNIKSKQTRTNVLAGIEAILNRLKHFRKPPENGMVIISG-VVNINGKEKHITEIIEPPEPVPLYKYHCDSKFYLDPLKEMLTEKKLYGLIVLDRREATVGLLKGKRIEVL 160
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METJA (Peptide chain release factor subunit 1 OS=Methanocaldococcus jannaschii GN=prf1 PE=3 SV=2) HSP 1 Score: 108.997 bits (271), Expect = 2.299e-23 Identity = 60/158 (37.97%), Postives = 92/158 (58.23%), Query Frame = 2 Query: 197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVV-TDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 +++ KK++K L+S +G GT +ISL +P +IS V + L +E ASNIKS+ R++V +AI + QRLKL + G+V++ G V + G EK T EP +PI +Y CD++F+ E L E LE D +G I++D N + G +L Sbjct: 8 QLYLFKKMLKELKSKKGKGTELISLYIPAGRRISDVAQHLREEMSQASNIKSKSTRKNVQSAIEAILQRLKLLKEPLEKGVVIFAGMVPRSGPGTEKMETYVIEPPEPIKTYIYRCDSEFYLEPLEEFLEDKDAYGVILVDRNEATIALVKGRNINIL 165
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METMA (Peptide chain release factor subunit 1 OS=Methanosarcina mazei GN=prf1 PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 4.336e-22 Identity = 57/151 (37.75%), Postives = 82/151 (54.30%), Query Frame = 2 Query: 197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSG 649 E ++ KK ++ L +G T +ISL +PP QI VT L DE G A+NIKS++ R +V AI S RL+ +KVP NG+V +TG V K + P PI Y CD+ F+ E L ++L+ + +G +V+D G L G Sbjct: 8 EKYEFKKKLEGLRDKKGRSTELISLYIPPDKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIVPPDPITVYKYHCDSSFYLEPLEDMLKDKNTYGLLVLDRREATIGLLVG 158
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_HALWD (Peptide chain release factor subunit 1 OS=Haloquadratum walsbyi (strain DSM 16790) GN=prf1 PE=3 SV=1) HSP 1 Score: 104.375 bits (259), Expect = 5.663e-22 Identity = 58/167 (34.73%), Postives = 93/167 (55.69%), Query Frame = 2 Query: 167 SDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 661 +D ++ + ++ +K+I+ L G+GT ++++ +PP Q+S V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+VL++G V T G+ VT E P +P+ + Y CD+ F T+ L ++L FG IV+D G L G E Sbjct: 3 TDAEDVSNDRRKYEFRKVIEELREYEGSGTQLVTIYIPPDRQVSDVVAHITQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTYPPDNGIVLFSGAVSTGGGQTTMVTRSLESPPEPVQSFRYHCDSDFLTDPLEDMLADKGLFGLIVLDRREANVGWLKGKRVE 169
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_HALLT (Peptide chain release factor subunit 1 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=prf1 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21 Identity = 59/167 (35.33%), Postives = 91/167 (54.49%), Query Frame = 2 Query: 167 SDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 661 SD QE + ++ +K+I+ L G+GT ++++ +P Q+S V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G + G+ VT E P +P+ + Y CD+ F TE L +LE FG IV+D G L G E Sbjct: 3 SDAQEASDDRRKYEFRKVIEELRDFEGSGTQLVTIYIPEDRQVSDVVAHVTQEHSEASNIKSKQTRTAVQDALTSIKDRLRYYDTFPPENGMVIFSGAIDAGGGQTDMVTRTLESPPQPVESFRYHCDSAFLTEPLEHMLEDSGLFGLIVLDRREANVGWLKGKRVE 169
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF11_METAC (Peptide chain release factor subunit 1-1 OS=Methanosarcina acetivorans GN=prf11 PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 1.262e-21 Identity = 57/151 (37.75%), Postives = 82/151 (54.30%), Query Frame = 2 Query: 197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSG 649 E ++ KK +++L +G T +ISL +P QI VT L DE G A+NIKS++ R +V AI S RL+ +KVP NG+V +TG V K + P +PI Y CD+ F+ E L ++L+ FG +V+D G L G Sbjct: 8 EKYEFKKKLESLRDKKGRSTELISLYIPADKQIFDVTNQLKDEHGQAANIKSKLTRTNVQGAIESLLSRLRYLDKVPENGIVYFTGAVDIGANKTSMESEVIIPPEPITVYKYHCDSSFYLEPLEDMLKDKSTFGLLVLDRREATIGLLVG 158 The following BLAST results are available for this feature:
BLAST of FC920857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920857 ID=FC920857; Name=FC920857; organism=Citrus clementina; type=EST; length=669bpback to top |