FC920857

Overview
NameFC920857
Unique NameFC920857
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length669
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14097 contig Ccv1_Contig14097:52..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METVS (Peptide chain release factor subunit 1 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=prf1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 56/169 (33.14%), Postives = 95/169 (56.21%), Query Frame = 2
Query:  164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            MS+   TD    ++  KK +K L+  RG GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V +AI    QRLKL  +    G++++ G +     G EK      EP +P+   +Y CD++F+TE+L + ++  + +G I++D N    GT+ G T  VL
Sbjct:    1 MSENSSTD----MYLFKKSLKELKGKRGKGTELISVYVPAGRRLSDISQHLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEKGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFIYRCDSEFYTESLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF12_METAC (Peptide chain release factor subunit 1-2 OS=Methanosarcina acetivorans GN=prf12 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 58/157 (36.94%), Postives = 87/157 (55.41%), Query Frame = 2
Query:  197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            E +  KK ++ L+S  G  T +ISL +PP  QIS VTK L +E   ASNI S++ R +V  A+ S   +L+  +K+P NG+V +TGTV T   +   V     P +P+   +Y CD+ F+ E L E+L     +G +++D      G L G   EV+
Sbjct:    8 EKYVFKKQLETLKSKNGRSTELISLYIPPDKQISDVTKHLREEHEQASNIISKLIRNNVQEALHSLLAKLRSLHKIPENGIVYFTGTVDTGANRTGMVNEVLFPPEPVADYIYRCDSVFYLEPLEEMLRECTTYGLLLLDLREATIGMLVGRQTEVI 164          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21
Identity = 57/153 (37.25%), Postives = 82/153 (53.59%), Query Frame = 2
Query:  203 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 661
            ++ KK +++L   +G GT +ISL +PP  QIS V   L +E   ASNIKS++ + +V  AI S   RL+ Y  VP NG+V +TG V     K    T   EP +PI    Y CD+ F    L ++L+    +G +V+D      G L+G   E
Sbjct:   10 YEFKKKLESLRGKKGRGTELISLYIPPDKQISDVVSQLRNEHSQASNIKSKLTKTNVQGAIDSIMSRLR-YGTVPENGIVYFTGAVDVGANKTNMETTIVEPPQPIITYRYHCDSSFFLTPLEDMLKEAKTYGLLVLDRREATVGLLTGKQIE 161          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_HALSA (Peptide chain release factor subunit 1 OS=Halobacterium salinarium GN=prf1 PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 2
Query:  203 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSG 649
            ++ +K+I+ L+   G+GT ++++ +PP  QIS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+V+++G V +  G+   VT   E P +PI +  Y CD+ F TE L E+L     +G IV+D   +  G L G
Sbjct:   15 YEFRKVIEELKDYEGSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKG 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_HALS3 (Peptide chain release factor subunit 1 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=prf1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 2
Query:  203 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSG 649
            ++ +K+I+ L+   G+GT ++++ +PP  QIS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NG+V+++G V +  G+   VT   E P +PI +  Y CD+ F TE L E+L     +G IV+D   +  G L G
Sbjct:   15 YEFRKVIEELKDYEGSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKG 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METMP (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis GN=prf1 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 53/169 (31.36%), Postives = 93/169 (55.03%), Query Frame = 2
Query:  164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            MS    TD    ++  KK +K L+  +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V +AI    QRLKL  +    G++++ G +     G EK      EP +P+   +Y CD+ F+T+ L + ++ ++ +G I++D N    GT+ G T  +L
Sbjct:    1 MSGNSSTD----LYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDNEVYGVILVDRNEATIGTVRGKTITIL 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METM6 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=prf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 54/169 (31.95%), Postives = 92/169 (54.44%), Query Frame = 2
Query:  164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            MS    TD    ++  KK +K L+  +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V +AI    QRLKL  +    G++++ G +     G EK      EP +P+   +Y CD+ F+T+ L + ++  + +G I++D N    GT+ G T  VL
Sbjct:    1 MSGNSSTD----MYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METM5 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=prf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 54/169 (31.95%), Postives = 92/169 (54.44%), Query Frame = 2
Query:  164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            MS    TD    ++  KK +K L+  +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V +AI    QRLKL  +    G++++ G +     G EK      EP +P+   +Y CD+ F+T+ L + ++  + +G I++D N    GT+ G T  VL
Sbjct:    1 MSGNSSTD----MYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_HALMA (Peptide chain release factor subunit 1 OS=Haloarcula marismortui GN=prf1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 62/169 (36.69%), Postives = 95/169 (56.21%), Query Frame = 2
Query:  164 MSDGQETDKNI-EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 661
            MS+ QE +++  + ++ +K+I+ L+  +G+GT ++S+ +P    IS V   +  E   ASNIKS+  R +V  A+TS + RL+ Y+  PP NGLV+++G   T  G+   VT   E P  PI +  Y CD++F TE L  +L     FG IV+D      G L G   E
Sbjct:    1 MSEQQEQEQSDKQKYEFRKVIEELKGYQGSGTQLVSIYIPEGKLISDVVAHVTQEHSEASNIKSKDTRTAVQDALTSIKDRLRYYDVRPPDNGLVVFSGAFDTGGGRTDMVTKVLESPPDPIESFRYHCDSEFLTEPLEHMLADKGLFGLIVLDRREANVGWLKGKRVE 169          
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METM7 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=prf1 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 2
Query:  164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667
            MS    TD    ++  KK ++ L+  +G GT +IS+ +P   ++S +++ L  E   +SNIKS+   ++V +AI    QRLKL  +    G++++ G +     G EK      EP +P+   +Y CD+ F+T+ L + ++  + +G I++D N    GT+ G T  VL
Sbjct:    1 MSGNSSTD----MYLFKKSLRELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165          
The following BLAST results are available for this feature:
BLAST of FC920857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RF1_METVS1.648e-2133.14Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF12_METAC3.671e-2136.94Peptide chain release factor subunit 1-2 OS=Methan... [more]
RF1_METBU6.262e-2137.25Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_HALSA1.822e-2037.75Peptide chain release factor subunit 1 OS=Halobact... [more]
RF1_HALS31.822e-2037.75Peptide chain release factor subunit 1 OS=Halobact... [more]
RF1_METMP9.042e-2031.36Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM61.181e-1931.95Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_METM51.181e-1931.95Peptide chain release factor subunit 1 OS=Methanoc... [more]
RF1_HALMA1.181e-1936.69Peptide chain release factor subunit 1 OS=Haloarcu... [more]
RF1_METM72.631e-1931.36Peptide chain release factor subunit 1 OS=Methanoc... [more]

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Properties
Property NameValue
Genbank descriptionC32013H05EF RVDevelop1 Citrus clementina cDNA clone C32013H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920857 ID=FC920857; Name=FC920857; organism=Citrus clementina; type=EST; length=669bp
GGCGGCCAAGGGACGGGATTCTCCTCCTTTAGAGATTTGTCATTGGAGGT
CTTTCTTGAAGGAAGGAGAGTGACAGAAGCCGACTTTTGCTGCTGCGCCG
TCGCCGATTACCTCTCTCATCTAGATTATATCACCGTTTCTGCAGTTTCA
ACCAGTACCCACAATGTCAGATGGTCAGGAAACCGATAAGAACATTGAGA
TATGGAAAATCAAAAAATTGATCAAGGCACTGGAATCTGCAAGAGGTAAT
GGAACCAGTATGATATCCCTTATTATGCCTCCCCGTGATCAAATTTCTCG
GGTCACGAAGATGCTTGGTGATGAATTTGGAACTGCTTCAAACATTAAAA
GTAGGGTCAACCGTCAGTCTGTTCTGGCTGCTATTACTTCTGCTCAGCAG
AGGCTGAAGCTATATAACAAGGTTCCTCCCAATGGGTTGGTGCTTTATAC
TGGAACAGTTGTTACTGACGACGGCAAGGAAAAGAAAGTGACAATTGACT
TTGAGCCTTTCAAGCCTATAAATGCATCGTTGTATCTCTGTGATAACAAG
TTTCACACTGAAGCCTTGAATGAACTCTTAGAATCTGATGACAAATTTGG
GTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCACATTAAGTGGAA
ACACAAGAGAGGTGCTTCA
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