FC920857
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METVS (Peptide chain release factor subunit 1 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=prf1 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21 Identity = 56/169 (33.14%), Postives = 95/169 (56.21%), Query Frame = 2 Query: 164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 MS+ TD ++ KK +K L+ RG GT +IS+ +P ++S +++ L E +SNIKS+ ++V +AI QRLKL + G++++ G + G EK EP +P+ +Y CD++F+TE+L + ++ + +G I++D N GT+ G T VL Sbjct: 1 MSENSSTD----MYLFKKSLKELKGKRGKGTELISVYVPAGRRLSDISQHLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEKGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFIYRCDSEFYTESLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF12_METAC (Peptide chain release factor subunit 1-2 OS=Methanosarcina acetivorans GN=prf12 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21 Identity = 58/157 (36.94%), Postives = 87/157 (55.41%), Query Frame = 2 Query: 197 EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 E + KK ++ L+S G T +ISL +PP QIS VTK L +E ASNI S++ R +V A+ S +L+ +K+P NG+V +TGTV T + V P +P+ +Y CD+ F+ E L E+L +G +++D G L G EV+ Sbjct: 8 EKYVFKKQLETLKSKNGRSTELISLYIPPDKQISDVTKHLREEHEQASNIISKLIRNNVQEALHSLLAKLRSLHKIPENGIVYFTGTVDTGANRTGMVNEVLFPPEPVADYIYRCDSVFYLEPLEEMLRECTTYGLLLLDLREATIGMLVGRQTEVI 164
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METBU (Peptide chain release factor subunit 1 OS=Methanococcoides burtonii (strain DSM 6242) GN=prf1 PE=3 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21 Identity = 57/153 (37.25%), Postives = 82/153 (53.59%), Query Frame = 2 Query: 203 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVTDDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 661 ++ KK +++L +G GT +ISL +PP QIS V L +E ASNIKS++ + +V AI S RL+ Y VP NG+V +TG V K T EP +PI Y CD+ F L ++L+ +G +V+D G L+G E Sbjct: 10 YEFKKKLESLRGKKGRGTELISLYIPPDKQISDVVSQLRNEHSQASNIKSKLTKTNVQGAIDSIMSRLR-YGTVPENGIVYFTGAVDVGANKTNMETTIVEPPQPIITYRYHCDSSFFLTPLEDMLKEAKTYGLLVLDRREATVGLLTGKQIE 161
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_HALSA (Peptide chain release factor subunit 1 OS=Halobacterium salinarium GN=prf1 PE=3 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20 Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 2 Query: 203 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSG 649 ++ +K+I+ L+ G+GT ++++ +PP QIS V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G V + G+ VT E P +PI + Y CD+ F TE L E+L +G IV+D + G L G Sbjct: 15 YEFRKVIEELKDYEGSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKG 165
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_HALS3 (Peptide chain release factor subunit 1 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=prf1 PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20 Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 2 Query: 203 WKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSG 649 ++ +K+I+ L+ G+GT ++++ +PP QIS V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NG+V+++G V + G+ VT E P +PI + Y CD+ F TE L E+L +G IV+D + G L G Sbjct: 15 YEFRKVIEELKDYEGSGTQLVTIYIPPDKQISDVVAHVTQEHSEASNIKSKQTRTNVQDALTSIKDRLRYYDTFPPDNGMVVFSGAVDSGGGRTDMVTEVLESPPQPIESFRYHCDSAFLTEPLAEMLGDKGLYGLIVLDRRESNVGWLKG 165
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METMP (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis GN=prf1 PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20 Identity = 53/169 (31.36%), Postives = 93/169 (55.03%), Query Frame = 2 Query: 164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 MS TD ++ KK +K L+ +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V +AI QRLKL + G++++ G + G EK EP +P+ +Y CD+ F+T+ L + ++ ++ +G I++D N GT+ G T +L Sbjct: 1 MSGNSSTD----LYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDNEVYGVILVDRNEATIGTVRGKTITIL 165
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METM6 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=prf1 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19 Identity = 54/169 (31.95%), Postives = 92/169 (54.44%), Query Frame = 2 Query: 164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 MS TD ++ KK +K L+ +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V +AI QRLKL + G++++ G + G EK EP +P+ +Y CD+ F+T+ L + ++ + +G I++D N GT+ G T VL Sbjct: 1 MSGNSSTD----MYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METM5 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=prf1 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19 Identity = 54/169 (31.95%), Postives = 92/169 (54.44%), Query Frame = 2 Query: 164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 MS TD ++ KK +K L+ +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V +AI QRLKL + G++++ G + G EK EP +P+ +Y CD+ F+T+ L + ++ + +G I++D N GT+ G T VL Sbjct: 1 MSGNSSTD----MYLFKKSLKELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_HALMA (Peptide chain release factor subunit 1 OS=Haloarcula marismortui GN=prf1 PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19 Identity = 62/169 (36.69%), Postives = 95/169 (56.21%), Query Frame = 2 Query: 164 MSDGQETDKNI-EIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPP-NGLVLYTGTVVTDDGKEKKVTIDFE-PFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTRE 661 MS+ QE +++ + ++ +K+I+ L+ +G+GT ++S+ +P IS V + E ASNIKS+ R +V A+TS + RL+ Y+ PP NGLV+++G T G+ VT E P PI + Y CD++F TE L +L FG IV+D G L G E Sbjct: 1 MSEQQEQEQSDKQKYEFRKVIEELKGYQGSGTQLVSIYIPEGKLISDVVAHVTQEHSEASNIKSKDTRTAVQDALTSIKDRLRYYDVRPPDNGLVVFSGAFDTGGGRTDMVTKVLESPPDPIESFRYHCDSEFLTEPLEHMLADKGLFGLIVLDRREANVGWLKGKRVE 169
BLAST of FC920857 vs. ExPASy Swiss-Prot
Match: RF1_METM7 (Peptide chain release factor subunit 1 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=prf1 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19 Identity = 53/169 (31.36%), Postives = 92/169 (54.44%), Query Frame = 2 Query: 164 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQISRVTKMLGDEFGTASNIKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTVVT-DDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVL 667 MS TD ++ KK ++ L+ +G GT +IS+ +P ++S +++ L E +SNIKS+ ++V +AI QRLKL + G++++ G + G EK EP +P+ +Y CD+ F+T+ L + ++ + +G I++D N GT+ G T VL Sbjct: 1 MSGNSSTD----MYLFKKSLRELKGKKGKGTELISVYVPAGRRLSDISQYLRQELSQSSNIKSKTTMKNVQSAIEVILQRLKLLKEPLEMGVIIFAGMIPRGGPGTEKMEVYVLEPPEPVKTFVYRCDSLFYTDPLEDFIQDTEVYGVILVDRNEATIGTVKGKTITVL 165 The following BLAST results are available for this feature:
BLAST of FC920857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >FC920857 ID=FC920857; Name=FC920857; organism=Citrus clementina; type=EST; length=669bpback to top |