FC920860

Overview
NameFC920860
Unique NameFC920860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHIFL (Chaperone protein htpG OS=Shigella flexneri GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHST--KSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTYTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHIDS (Chaperone protein htpG OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHIBS (Chaperone protein htpG OS=Shigella boydii serotype 4 (strain Sb227) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_RHILO (Chaperone protein htpG OS=Rhizobium loti GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 68/229 (29.69%), Postives = 99/229 (43.23%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXX---CKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKD 679
            K +E+F   LK G++ED   + +L +L R+HST SG+    L DYV  MKEGQ  I+++ G+ +  +E SP LE  K +G EVL + D +D + V    +F+GK   S T                                +K  LG                 CLV  E+G     ER+M A    D       ++K  +EINP +   E +   A     D++ KD
Sbjct:  370 KVWENFGVVLKEGLYEDYERREQLLKLARFHSTASGEGWRGLADYVAAMKEGQKAIFFMAGDDRARLEASPQLEGFKARGIEVLLLTDPVDSFWVTMAPDFDGKPFKSVTQGVAELSDIPLLDDAKKPDTAAAPEVDGFLAFVKSALGDAVSDVKASDRLTESAVCLVAPEHGPDRQFERLMNAAGRLDK------AAKPILEINPRH---ERVLALAGLGDEDQAFKD 589          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_FRASC (Chaperone protein htpG OS=Frankia sp. (strain CcI3) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 46/106 (43.40%), Postives = 70/106 (66.04%), Query Frame = 2
Query:    8 YESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS 325
            ++ F   LK G+ ED+ N+  +  L+   ST   D  T+L++Y+ RMK+ QN+IYY+TG+S+  +ENSP +E  + KGYEVL + D +DE  V ++ EF+GK L S
Sbjct:  395 WKEFGAALKEGLLEDADNQDAILGLVSVDSTHDADRPTTLREYIERMKDAQNEIYYLTGDSRGMIENSPHMEAFRAKGYEVLILTDPVDEVWVERVAEFDGKPLKS 500          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ECOUT (Chaperone protein htpG OS=Escherichia coli (strain UTI89 / UPEC) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ECOLI (Chaperone protein htpG OS=Escherichia coli (strain K12) GN=htpG PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ECOLC (Chaperone protein htpG OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ECOL6 (Chaperone protein htpG OS=Escherichia coli O6 GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ECOL5 (Chaperone protein htpG OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
The following BLAST results are available for this feature:
BLAST of FC920860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
HTPG_SHIFL3.336e-2048.65Chaperone protein htpG OS=Shigella flexneri GN=htp... [more]
HTPG_SHIDS3.336e-2048.65Chaperone protein htpG OS=Shigella dysenteriae ser... [more]
HTPG_SHIBS3.336e-2048.65Chaperone protein htpG OS=Shigella boydii serotype... [more]
HTPG_RHILO3.336e-2029.69Chaperone protein htpG OS=Rhizobium loti GN=htpG P... [more]
HTPG_FRASC3.336e-2043.40Chaperone protein htpG OS=Frankia sp. (strain CcI3... [more]
HTPG_ECOUT3.336e-2048.65Chaperone protein htpG OS=Escherichia coli (strain... [more]
HTPG_ECOLI3.336e-2048.65Chaperone protein htpG OS=Escherichia coli (strain... [more]
HTPG_ECOLC3.336e-2048.65Chaperone protein htpG OS=Escherichia coli (strain... [more]
HTPG_ECOL63.336e-2048.65Chaperone protein htpG OS=Escherichia coli O6 GN=h... [more]
HTPG_ECOL53.336e-2048.65Chaperone protein htpG OS=Escherichia coli O6:K15:... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32013H09EF RVDevelop1 Citrus clementina cDNA clone C32013H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920860 ID=FC920860; Name=FC920860; organism=Citrus clementina; type=EST; length=691bp
GAAGTTTTATGAGTCATTCTCCAAGAACCTAAAGCTTGGTATCCATGAGG
ACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCATTCCACC
AAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAGAATGAA
GGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTG
TTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTG
CTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGA
GTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCAAGCTTG
ACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACCTTGAAGGAGAAATTT
GAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAA
GGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTG
GTGAGTATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCC
TTGAGAGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGA
GATCAATCCGGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGGCTGATG
CTGACAAGAATGACAAGTCTGTGAAGGACCTTGTCCTTCTG
back to top