FC920860

Overview
NameFC920860
Unique NameFC920860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ECOK1 (Chaperone protein htpG OS=Escherichia coli O1:K1 / APEC GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ECOHS (Chaperone protein htpG OS=Escherichia coli O9:H4 (strain HS) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ECO57 (Chaperone protein htpG OS=Escherichia coli O157:H7 GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ECO24 (Chaperone protein htpG OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHST--KSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+LLR+ ST   S  +  SL+DYV+RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWQQFGLVLKEGPAEDFANQEAIAKLLRFASTYTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVS 484          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_CHRSD (Chaperone protein htpG OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 69/224 (30.80%), Postives = 100/224 (44.64%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKL--VSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKND 664
            F+ +F   LK G  ED  N+ K+A+LLR+ ST+  S  +  SL  YV+RMKEGQ  IYY+  +   A  +SP LE  +KKG EVL + D IDE+ +  L E++GK    V+                             + +K  LG               P C+V  E+     M R+M+A              K  +E+NPE+ ++  L    D+  ND
Sbjct:  382 FWNAFGNVLKEGPAEDFANRDKIADLLRFSSTQTDSATQDQSLAGYVSRMKEGQQKIYYLVADGFNAASHSPHLEIFRKKGIEVLLLHDRIDEWLMSHLTEYDGKAFADVAKGDLDLDDMADEEEKKAQEETAKAKAPLIERVKTALGDEVQEVRITHRLTDSPACVVLSEHDMGYQMRRLMEAAG------QPLPEVKPILELNPEHSLVARLEGADDSVFND 599          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_BURXL (Chaperone protein htpG OS=Burkholderia xenovorans (strain LB400) GN=htpG PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.336e-20
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSG--DELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS-ATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEEL 634
            F++ F + LK GI ED  N+ ++A+LLR+ ST +   ++  SL DYV RMK  Q  IYY+T ++ +A  +SP LE  +KKG EVL + D +DE+ +  L EFEGK L S A                            + +K+ L                P CLV  +   +  ++R++KA   +  S          +E+NPE+ +++ L
Sbjct:  381 FWKEFGQVLKEGIGEDFANRERIAKLLRFASTHTDTPEQTVSLADYVARMKPEQTKIYYVTADTWQAATHSPHLEVFRKKGVEVLLLTDRVDEWILSFLTEFEGKPLQSVARGDLDLGALNDEEKEAQEKVSEEFKPLVEKMKEALKDKAKDVRLTFRLTDSPSCLVADDGEMSGYLQRMLKAAGQQAPSF------HPILEVNPEHALVKGL 587          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_MAGSA (Chaperone protein htpG OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=htpG PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 4.357e-20
Identity = 71/235 (30.21%), Postives = 104/235 (44.26%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQL-----KEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            +F+ +F   LK GI+ED   KT + EL R+ ST  GD LT+L DYV RMK+GQ+ IY ITG+    ++ SP LE    KG EVL + D IDE+ V  +     K+F       A                            + +K  LG                 CLV  E   + ++E++++A     N   G     + +EINP + +++ L  R  A   D  ++D   L
Sbjct:  363 EFWAAFGPVLKEGIYEDFERKTDILELCRFRSTH-GDGLTTLADYVARMKDGQDAIYTITGDDLDQLKKSPQLEGFAAKGVEVLLLTDPIDEFWVSAVRSYAEKDFRSVAAAGADLSKVKAPEGAEDKKADEAPADELTTLIEAVKLALGERVKDVRPSERLTESAVCLVAAEGEMSMHLEKMLRAH----NQAPG--ERARILEINPRHALIKGLAARVKAGGTDAGLEDAAFL 590          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_POLNA (Chaperone protein htpG OS=Polaromonas naphthalenivorans (strain CJ2) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 50/107 (46.73%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS 325
            FY  F   LK G+ ED  N+ +LA+LLR+ S+ +     S  DY  RMK+GQ+ IYYIT ++  A ++SP LE  +KKG EVL M D +DE+A+  L EF+G  L S
Sbjct:  381 FYAEFGAVLKEGLGEDFANRERLAKLLRFASSTTDTTTVSFADYKARMKDGQDAIYYITADTLAAAKSSPQLEIFRKKGIEVLLMADRVDEWALNYLNEFDGTPLQS 487          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_BUCAP (Chaperone protein htpG OS=Buchnera aphidicola subsp. Schizaphis graminum GN=htpG PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.690e-20
Identity = 67/229 (29.26%), Postives = 102/229 (44.54%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLV 685
            F+  F   LK G  EDS N   +A LLR+ S +  S ++  SL+ Y++ M E Q  IYYIT +S  + +NSP LE   KK  +VL + D IDE+ +  L EFEGKK  S +                           K +K  LG               PC +++     +  M ++  A              K   EINPE+ +++++ K  + +K D+ +K L+
Sbjct:  375 FWNQFGSVLKEGPAEDSNNLNLIASLLRFTSIQNNSSEQNISLEKYISNMHEKQEKIYYITADSYTSAKNSPHLELFNKKNIDVLLLSDRIDEWMMNYLTEFEGKKFQSISKEDLSLNKLTKENENKKETSTEMIEFLKKVKKTLGDKVKSVRLTYRLTETPCIVLSDSNEMSTQMAKLFSAAG------QSVPELKYIFEINPEHKLIQKICKIKENEKFDEWIKLLL 597          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_CITK8 (Chaperone protein htpG OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=htpG PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.431e-20
Identity = 52/111 (46.85%), Postives = 72/111 (64.86%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTK--SGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F++ F   LK G  ED  N+  +A+L+R+ ST   S  +  SL+DY++RMKEGQ  IYYIT +S  A ++SP LE L+KKG EVL + D IDE+ +  L EF+GK   S +
Sbjct:  374 FWKQFGLVLKEGPAEDHANQEAIAKLMRFASTHTDSSAQTVSLEDYISRMKEGQEKIYYITADSYAAAKSSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKAFQSVS 484          
The following BLAST results are available for this feature:
BLAST of FC920860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
HTPG_ECOK13.336e-2048.65Chaperone protein htpG OS=Escherichia coli O1:K1 /... [more]
HTPG_ECOHS3.336e-2048.65Chaperone protein htpG OS=Escherichia coli O9:H4 (... [more]
HTPG_ECO573.336e-2048.65Chaperone protein htpG OS=Escherichia coli O157:H7... [more]
HTPG_ECO243.336e-2048.65Chaperone protein htpG OS=Escherichia coli O139:H2... [more]
HTPG_CHRSD3.336e-2030.80Chaperone protein htpG OS=Chromohalobacter salexig... [more]
HTPG_BURXL3.336e-2030.99Chaperone protein htpG OS=Burkholderia xenovorans ... [more]
HTPG_MAGSA4.357e-2030.21Chaperone protein htpG OS=Magnetospirillum magneti... [more]
HTPG_POLNA5.690e-2046.73Chaperone protein htpG OS=Polaromonas naphthaleniv... [more]
HTPG_BUCAP5.690e-2029.26Chaperone protein htpG OS=Buchnera aphidicola subs... [more]
HTPG_CITK87.431e-2046.85Chaperone protein htpG OS=Citrobacter koseri (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32013H09EF RVDevelop1 Citrus clementina cDNA clone C32013H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920860 ID=FC920860; Name=FC920860; organism=Citrus clementina; type=EST; length=691bp
GAAGTTTTATGAGTCATTCTCCAAGAACCTAAAGCTTGGTATCCATGAGG
ACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCATTCCACC
AAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAGAATGAA
GGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTG
TTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTG
CTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGA
GTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCAAGCTTG
ACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACCTTGAAGGAGAAATTT
GAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAA
GGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTG
GTGAGTATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCC
TTGAGAGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGA
GATCAATCCGGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGGCTGATG
CTGACAAGAATGACAAGTCTGTGAAGGACCTTGTCCTTCTG
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