FC920860 | Citrus Genome Database

Overview


Name	FC920860
Unique Name	FC920860
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	691

Libraries


Library Name	Type
RVDevelop1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
FC920860_ssr366	microsatellite	FC920860_ssr366:366..377.	BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15313	contig	Ccv1_Contig15313:14..704.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HSC90_DICDI (Heat shock cognate 90 kDa protein OS=Dictyostelium discoideum GN=hspD PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 5.075e-69
Identity = 137/230 (59.57%), Postives = 164/230 (71.30%), Query Frame = 2

Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KFYE+FSKNLKLG+HEDS N+ K A+LLRY ++KSGDEL +LK+YV RMKEGQN+IYYITGESKKAVENSPF+E LKKK  EV+YM D IDEYAV QLKE++GKKLVS T                           K +KDVLG               PC LVT EYGW+ANMERIMKAQALRD+SM+ YMSSKKT+E+NP++PI+ +L K+A A+K+ K+ KD V L
Sbjct:  404 KFYEAFSKNLKLGVHEDSQNREKFADLLRYQTSKSGDELVTLKEYVGRMKEGQNEIYYITGESKKAVENSPFIEGLKKKNLEVIYMCDPIDEYAVQQLKEYDGKKLVSITKEGLKLDETEDEKKKAEQDKAANEELLKQVKDVLGDKVEKVVLSTRLANSPCVLVTSEYGWSANMERIMKAQALRDSSMSSYMSSKKTLELNPDHPIVRDLAKKA-AEKS-KTFKDFVYL 631

[Close]

BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HSP90_BRUPA (Heat shock protein 90 OS=Brugia pahangi GN=HSP90 PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 6.628e-69
Identity = 126/230 (54.78%), Postives = 166/230 (72.17%), Query Frame = 2

Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KFYE FSKN+KLGIHEDSTN+ KL+E LR++++ S +E+TSLKDYV+RMKE Q  IY+ITGES++AV +S F+E++K++G+EV+YM D IDEY V QLKE++GKKLVS T                          CKV+KD+L                PCC+VT EYGW+ANMERIMKAQALRD+S  GYM++KK +EINP++ +++ LR+R +ADKNDK+VKDLV+L
Sbjct:  418 KFYEQFSKNIKLGIHEDSTNRKKLSEFLRFYTSASSEEMTSLKDYVSRMKENQKQIYFITGESREAVASSAFVERVKRRGFEVIYMTDPIDEYCVQQLKEYDGKKLVSVTKEGLELPESEEEKKKFEEDKVKFENLCKVMKDILEKKVEKVAVSNRLVSSPCCIVTSEYGWSANMERIMKAQALRDSSTMGYMAAKKHLEINPDHSVIKALRERVEADKNDKTVKDLVVL 647

[Close]

BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: H90A1_DANRE (Heat shock protein HSP 90-alpha 1 OS=Danio rerio GN=hsp90a.1 PE=2 SV=3)

HSP 1 Score: 259.996 bits (663), Expect = 8.657e-69
Identity = 127/230 (55.22%), Postives = 162/230 (70.43%), Query Frame = 2

Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            K+YE FSKN+KLGIHEDS N+ KL++LLRY+++ SGDE+ SLKDYV+RMK+ Q  IYYITGE+K  V NS F+E+L+K G EV+YM++ IDEY V QLKE++GK LVS T                          CK++KD+L                PCC+VT  YGWTANMERIMK+QALRDNS  GYM++KK +EINP +PI+E LR++A+ADKNDK+VKDLV+L
Sbjct:  429 KYYEQFSKNIKLGIHEDSQNRKKLSDLLRYYTSASGDEMVSLKDYVSRMKDTQKHIYYITGETKDQVANSAFVERLRKAGLEVIYMIEPIDEYCVQQLKEYDGKNLVSVTKEGLELPEDEEEKKKQDELKAKYENLCKIMKDILDKKIEKVTVSNRLVSSPCCIVTSTYGWTANMERIMKSQALRDNSTMGYMTAKKHLEINPAHPIVETLREKAEADKNDKAVKDLVIL 658

[Close]

BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HSP90_CAEBR (Heat shock protein 90 OS=Caenorhabditis briggsae GN=daf-21 PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 3.290e-68
Identity = 132/230 (57.39%), Postives = 161/230 (70.00%), Query Frame = 2

Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KFYE F KNLKLGIHEDSTN+ KL+E LRY +T +G+E TSLK+YV+RMKE Q  IYYITGESK+ V  S F+E++K +G+EVLYM D IDEY V QLKE++GKKLVS T                          CKVIKD+L                PCC+VT EYGW+ANMERIMKAQALRD+S  GYM++KK +EINP++ IM+ LR+R +ADKNDK+VKDLV+L
Sbjct:  411 KFYEQFGKNLKLGIHEDSTNRKKLSEFLRY-ATSAGEEPTSLKEYVSRMKENQTQIYYITGESKEVVAASAFVERVKSRGFEVLYMCDPIDEYCVQQLKEYDGKKLVSVTKEGLELPETEEEKKKFEEDKVAYENLCKVIKDILEKKIEKVAVSNRLVSSPCCIVTSEYGWSANMERIMKAQALRDSSTMGYMAAKKHLEINPDHAIMKTLRERVEADKNDKTVKDLVVL 639

[Close]

BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HSP90_EIMTE (Heat shock protein 90 OS=Eimeria tenella GN=HSP90 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 7.329e-68
Identity = 133/230 (57.83%), Postives = 156/230 (67.83%), Query Frame = 2

Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KFYE FSKNLKLGIHEDS N+ K+AELLR+HS+KSG+++ S K+YV RMKEGQ DIYYITGES++ V NSPFLEKL KKGYEVLYM D IDEYAV QLKEF+  KL   T                           K+IK+VL                PC LVT E+GW+ANMERIMKAQALRDNSM  YM SKKTME+N  + IM E++ +A  DK+DK+VKDL+ L
Sbjct:  420 KFYEQFSKNLKLGIHEDSANRAKIAELLRFHSSKSGEDMVSFKEYVDRMKEGQKDIYYITGESRQTVANSPFLEKLTKKGYEVLYMTDPIDEYAVQQLKEFDNHKLRCCTKEGLEIDESEEEKKKFEELKAEFEPLLKLIKEVLHDKVDKVVLSNRITDSPCVLVTTEFGWSANMERIMKAQALRDNSMTSYMVSKKTMEVNGHHSIMIEIKNKAAVDKSDKTVKDLIWL 649

[Close]

BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HSP90_CAEEL (Heat shock protein 90 OS=Caenorhabditis elegans GN=daf-21 PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 9.571e-68
Identity = 132/230 (57.39%), Postives = 158/230 (68.70%), Query Frame = 2

Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KFYE F KNLKLGIHEDSTN+ KL++ LRY ST +GDE TSLK+YV+RMKE Q  IYYITGESK  V  S F+E++K +G+EVLYM D IDEY V QLKE++GKKLVS T                          CKVIKD+L                PCC+VT EYGW+ANMERIMKAQALRD+S  GYM++KK +EINP++ IM+ LR R + DKNDK+VKDLV+L
Sbjct:  407 KFYEQFGKNLKLGIHEDSTNRKKLSDFLRY-STSAGDEPTSLKEYVSRMKENQTQIYYITGESKDVVAASAFVERVKSRGFEVLYMCDPIDEYCVQQLKEYDGKKLVSVTKEGLELPETEEEKKKFEEDKVAYENLCKVIKDILEKKVEKVGVSNRLVSSPCCIVTSEYGWSANMERIMKAQALRDSSTMGYMAAKKHLEINPDHAIMKTLRDRVEVDKNDKTVKDLVVL 635

[Close]

BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HSP90_THEAN (Heat shock protein 90 OS=Theileria annulata GN=TA12105 PE=3 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 1.382e-66
Identity = 133/230 (57.83%), Postives = 155/230 (67.39%), Query Frame = 2

Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KFYE FSKNLKLGIHED+ N++K+AELLR+ +TKSGDEL SLK+YV RMK  Q  +YYITGESK++V +SPFLE LK + YEVLYM D IDEYAV Q+KEFEGKKL   T                          CK IK+VL                PC LVT E+GW+ANMERIMKAQALRD+S+  YM SKK MEINP + IM+EL+ RA  DK DK+VKDLV L
Sbjct:  432 KFYEQFSKNLKLGIHEDNANRSKIAELLRFETTKSGDELVSLKEYVDRMKSDQKFVYYITGESKQSVASSPFLETLKARDYEVLYMTDPIDEYAVQQIKEFEGKKLKCCTKEGLELDEGEDEKKSFEALKEEMEPLCKHIKEVLHDKVEKVVCGTRFTDSPCALVTSEFGWSANMERIMKAQALRDSSITSYMLSKKIMEINPRHSIMKELKARAANDKTDKTVKDLVWL 661

[Close]

BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HSP85_TRYCR (Heat shock-like 85 kDa protein OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.805e-66
Identity = 122/230 (53.04%), Postives = 161/230 (70.00%), Query Frame = 2

Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KFYE F KN+KLGIHEDS N+ KL ELLR+HS++SG+++T+LKDYVTRMKEGQ  IYY+TG+SKK +E SPF+E+ +++G+EVL+M + IDEY + Q+K+FE KK    T                          CK +KDVLG               PC LVT E+GW+A+ME+IM+ QALRD+SM+ YM SKKTMEINP +PI++EL++R +AD+NDK+VKDLV L
Sbjct:  411 KFYEQFGKNVKLGIHEDSANRKKLMELLRFHSSESGEDMTTLKDYVTRMKEGQKCIYYVTGDSKKKLETSPFIEQARRRGFEVLFMTEPIDEYVMQQVKDFEDKKFACLTKEGVHFEETEEEKKQREEEKTAYERLCKAMKDVLGDKVEKVVVSERLATSPCILVTSEFGWSAHMEQIMRNQALRDSSMSAYMMSKKTMEINPAHPIVKELKRRVEADENDKAVKDLVYL 640

[Close]

BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HSP83_DROPS (Heat shock protein 83 OS=Drosophila pseudoobscura pseudoobscura GN=Hsp83 PE=3 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 2.358e-66
Identity = 120/230 (52.17%), Postives = 158/230 (68.70%), Query Frame = 2

Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KFYE FSKNLKLG+HEDS N+ KLA+ LR+H++ SGD+  SL DYV+RMKE Q  +Y+ITGESK  V NS F+E++K +G+EV+YM + IDEY +  LKE++GK+LVS T                          CK++K +L                PCC+VT ++GW+ANMERIMKAQALRD +  GYM+ KK +EINP++PI+E LR++ADADKNDK+VKDLV+L
Sbjct:  421 KFYEQFSKNLKLGVHEDSNNRAKLADFLRFHTSASGDDFCSLSDYVSRMKENQKHVYFITGESKDQVSNSAFVERVKARGFEVVYMTEPIDEYVIQHLKEYKGKQLVSVTKEGLELPEDEAEKKKREEDKAKFEGLCKLMKSILDSKVEKVVVSNRLVDSPCCIVTSQFGWSANMERIMKAQALRDTATMGYMAGKKQLEINPDHPIVEALRQKADADKNDKAVKDLVIL 650

[Close]

BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HSP90_THEPA (Heat shock protein 90 OS=Theileria parva GN=TP02_0244 PE=2 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 3.079e-66
Identity = 132/230 (57.39%), Postives = 155/230 (67.39%), Query Frame = 2

Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KFYE FSKNLKLGIHED+ N++K+AELLR+ +TKSGDEL SLK+YV RMK  Q  +YYITGESK++V +SPFLE L+ + YEVLYM D IDEYAV Q+KEFEGKKL   T                          CK IK+VL                PC LVT E+GW+ANMERIMKAQALRD+S+  YM SKK MEINP + IM+EL+ RA  DK DK+VKDLV L
Sbjct:  431 KFYEQFSKNLKLGIHEDNANRSKIAELLRFETTKSGDELVSLKEYVDRMKSDQKYVYYITGESKQSVASSPFLETLRARDYEVLYMTDPIDEYAVQQIKEFEGKKLKCCTKEGLDLDEGEDEKKSFEALKEEMEPLCKHIKEVLHDKVEKVVCGTRFTDSPCALVTSEFGWSANMERIMKAQALRDSSITSYMLSKKIMEINPRHSIMKELKTRAANDKTDKTVKDLVWL 660

The following BLAST results are available for this feature:

BLAST of FC920860 vs. ExPASy Swiss-Prot

BLAST of FC920860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370


Match Name	E-value	Identity	Description
HSC90_DICDI	5.075e-69	59.57	Heat shock cognate 90 kDa protein OS=Dictyostelium...	[more]
HSP90_BRUPA	6.628e-69	54.78	Heat shock protein 90 OS=Brugia pahangi GN=HSP90 P...	[more]
H90A1_DANRE	8.657e-69	55.22	Heat shock protein HSP 90-alpha 1 OS=Danio rerio G...	[more]
HSP90_CAEBR	3.290e-68	57.39	Heat shock protein 90 OS=Caenorhabditis briggsae G...	[more]
HSP90_EIMTE	7.329e-68	57.83	Heat shock protein 90 OS=Eimeria tenella GN=HSP90 ...	[more]
HSP90_CAEEL	9.571e-68	57.39	Heat shock protein 90 OS=Caenorhabditis elegans GN...	[more]
HSP90_THEAN	1.382e-66	57.83	Heat shock protein 90 OS=Theileria annulata GN=TA1...	[more]
HSP85_TRYCR	1.805e-66	53.04	Heat shock-like 85 kDa protein OS=Trypanosoma cruz...	[more]
HSP83_DROPS	2.358e-66	52.17	Heat shock protein 83 OS=Drosophila pseudoobscura ...	[more]
HSP90_THEPA	3.079e-66	57.39	Heat shock protein 90 OS=Theileria parva GN=TP02_0...	[more]

Pages

Properties


Property Name	Value
Genbank description	C32013H09EF RVDevelop1 Citrus clementina cDNA clone C32013H09, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC920860 ID=FC920860; Name=FC920860; organism=Citrus clementina; type=EST; length=691bp
GAAGTTTTATGAGTCATTCTCCAAGAACCTAAAGCTTGGTATCCATGAGG
ACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCATTCCACC
AAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAGAATGAA
GGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTG
TTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTG
CTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGA
GTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCAAGCTTG
ACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACCTTGAAGGAGAAATTT
GAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAA
GGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTG
GTGAGTATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCC
TTGAGAGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGA
GATCAATCCGGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGGCTGATG
CTGACAAGAATGACAAGTCTGTGAAGGACCTTGTCCTTCTG