FC920860

Overview
NameFC920860
Unique NameFC920860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_HELPH (Chaperone protein htpG OS=Helicobacter pylori (strain HPAG1) GN=htpG PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 47/102 (46.08%), Postives = 67/102 (65.69%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFE 307
            KFYE F K LK G++ D  NK KL ELLR++S K  ++L SLK+Y   +KE Q  IYY+ GE+   ++ SP LEK  +KGY+VL + D ID + +  + E++
Sbjct:  377 KFYEPFGKVLKEGLYGDFENKEKLLELLRFYS-KDKEKLISLKEYRENLKENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYD 477          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_HELPJ (Chaperone protein htpG OS=Helicobacter pylori J99 GN=htpG PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 47/102 (46.08%), Postives = 65/102 (63.73%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFE 307
            KFYE F K LK G++ D  NK KL ELLR++S   G E  SLK+Y   +KE Q  IYY+ GE+   ++ SP LEK  +KGY+VL + D ID + +  + E++
Sbjct:  377 KFYEPFGKVLKEGLYGDFENKEKLLELLRFYSKDKG-EWISLKEYKENLKENQKSIYYLLGENLDLLKASPLLEKYAQKGYDVLLLSDEIDAFVMPGVNEYD 477          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_DESDG (Chaperone protein htpG OS=Desulfovibrio desulfuricans (strain G20) GN=htpG PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 64/228 (28.07%), Postives = 110/228 (48.25%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDE--LTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEY---AVGQLKEFEGKKL----VSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRK--RADAD 655
            F+ +  +  ++G + D  N+ K   LLR++S+   DE  L SL DY+ R +EGQ  ++Y++  +++A   +P +E  ++KG EVLY+ +A DE+   ++G+  EFE +        A                              +K +LG               P CL + + G TA+ME++M+    +D S+      +K +EINP++P+   L +  RADAD
Sbjct:  367 FWRTHGRVFRMG-YNDYINRDKFIPLLRFNSSALDDEKGLCSLDDYIGRAREGQKTVWYVSAPNREAARLNPHVEIFRRKGIEVLYLYEAADEFIMESLGKWNEFEFRSAEHADADALKDFDDVEKKDAPEALDEEGRKTLSSLLSHMKTLLGDKVEDVRESARLSDSPACLASKDGGMTASMEKLMRVMN-KDESV-----PRKVLEINPDHPLTRNLLRLYRADAD 587          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_CHLCH (Chaperone protein htpG OS=Chlorobium chlorochromatii (strain CaD3) GN=htpG PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 60/225 (26.67%), Postives = 107/225 (47.56%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGD-ELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVK 676
            FY++F   +K+G++ D TN+ KL ELLR+ STK+ + E  +L++YV RM   Q +IYY +G ++  +   P +E  ++ G EVL + D +D + +  + EF+ KK + +                            +  K+ L                P  LV+G+    + +ER+MK   + +  M     +K+ +E+N  +PI+  +     AD N+  +K
Sbjct:  374 FYKAFGPIIKIGLNTDFTNREKLIELLRFESTKTEEGEFVTLREYVERMGSEQKEIYYHSGNNRAQLLAHPNIEYFREHGIEVLLLSDPVDMFVIPSIHEFD-KKPLKSIEKADCDFSQQSSNKAEPVAPNLLNPVLQAFKEALSNEVEDVVESRRLVSSPVTLVSGKDAIDSQLERMMK---MMNTPMP---PAKRILEVNSSHPIVRNIAGMIMADANNPLIK 591          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_WOLPM (Chaperone protein htpG OS=Wolbachia pipientis wMel GN=htpG PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 68/238 (28.57%), Postives = 105/238 (44.12%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHE--DSTNKTKLAELLRYHSTKSGDE-LTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT-----XXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KF+ +F   LK G+ E   +  +  L  + R+HST  GDE L S+ DY++RMK  Q  IYY+TG S  +V+NSP LE    KG EVL  VD +D++    + E++ +K+ S T                                +    VLG               P CL   E      MER      LR+     Y  + K +EIN ++P+++ + K       + +++D++ L
Sbjct:  374 KFWTNFGAVLKEGLCEAMPTDEREALLSICRFHST--GDEKLVSIDDYISRMKPEQEHIYYLTGNSLDSVKNSPQLEGFVSKGLEVLLFVDPVDDFWTSVIHEYKDQKIKSVTRADVDLEKFSSEEDKTDEENKSNEEKTEETILQYFTTVLGDSVKSVKISKKLTDSPVCLAVDEGAMDLRMERF-----LREQKQLNY-RTPKVLEINTKHPLIKSIMKSYAESGENPTLEDMIHL 603          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ALKMQ (Chaperone protein htpG OS=Alkaliphilus metalliredigens (strain QYMF) GN=htpG PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.186e-17
Identity = 61/230 (26.52%), Postives = 108/230 (46.96%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHED-STNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVL 688
            +FY+SF + +K G++ D   NK  L +LL ++S+K   ++ +L +YV RMKE Q  IYY +G+S + ++  P  E L ++GYE+LY  D +DE+A+  L +++ K+  S +                             +K+ L                P CL T +   T  ME+I+ A           + +++ +EIN  + + + L++  D D+    +   VL
Sbjct:  378 EFYDSFGRQIKYGVYSDFGQNKETLKDLLLFYSSKE-KKMVTLDEYVGRMKEDQKYIYYASGDSIEKIDKMPQTELLAEQGYEILYFADDVDEFAIRVLVDYKEKEFKSVSSGDLGIEEKDEKEEQEEQTQGSKEVFA-FMKEALSQKVKDVRPSKRLKNHPVCLAT-DGDVTIEMEKILSAMPNNQE-----IKAERVLEININHDVFKTLKEAFDNDQEKLKIYTNVL 599          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_RICPR (Chaperone protein htpG OS=Rickettsia prowazekii GN=htpG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 64/234 (27.35%), Postives = 107/234 (45.73%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVI----KDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KF+ +F   LK G+ E +T+  KL E+  + S    +++ S+ +Y+   KEGQN IYY++G++   + +SP +E L  K  +VL   D +D++ V    E++G  + SAT                           K++    K++LG               P CL   +      MER +  Q    N      +S K +E+NP+N I+E++    D   N+K+  +LV L
Sbjct:  365 KFWTNFGGALKEGLCEATTDHEKLLEVCIFRSALH-NKMISIDEYIANFKEGQNTIYYLSGDNPDKLLSSPQIEGLLNKNIDVLLFTDTVDDFWVNVNSEYKGYAIKSATRSDIDVEQTTSQPKDKNTDSKKSDNEYKLLTDYFKEILGELVKEVKISKKLTLSPACLAVSDTAMDIRMERFLIEQKQIAN------ASAKNLELNPKNKIIEKIFN--DLKANNKNNNELVNL 589          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_METRJ (Chaperone protein htpG OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=htpG PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.549e-17
Identity = 65/217 (29.95%), Postives = 101/217 (46.54%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD 655
            F+E+F   LK GI+ED   + ++A LLR+ S+ + +  TSL DYV+RMK+GQ  IYY+  +  +A+++SP LE  + +G EVL + D +D +   QL  F+GK L S T                             +K  LG                  L  G  G    M+R+M     R    AG  + +  +EINP +P++  L    +++
Sbjct:  363 FWENFGPVLKEGIYEDFERRGEIAPLLRFRSS-AVEGWTSLPDYVSRMKDGQEAIYYLVADDAEALKSSPQLEGFRARGLEVLLLSDHVDAFWPDQLGTFDGKPLRSITKGGLDLSKFALEGEQPEAPEGIDAFVA-AVKTALGAEVSDVRTTDRLVDSAVVLSAGSGGPDLQMQRLM-----RRAGRAG--AGQPVLEINPRHPLIRALAAAPESE 570          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_BORGA (Chaperone protein htpG OS=Borrelia garinii GN=htpG PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.024e-17
Identity = 60/222 (27.03%), Postives = 100/222 (45.05%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDK 667
            KF + F + +K G++ D  N+ KL  L+R+ S+ S D   S K+Y  RMKE Q  IYYITG  +  ++ +P +   K+KG+E+L M D +DE  +  + E+EG KL +                               +K++L                P  ++      T  M++IM +       +      K  +E+NP N I++ L K  +++K +K
Sbjct:  370 KFSKEFGRCIKEGVYSDFENREKLISLIRFKSS-SVDGFVSFKEYKERMKESQKSIYYITGGKENILKENPIVSAYKEKGFEILIMDDELDEAILNLIPEYEGLKLKAINKNETSNELKDENFKKIEEEFKDILTK---VKEILKDHIKEVNLSATLIKEPSAIIVDSNDPTYQMQKIMLSMGQEVKEI------KPILELNPNNKIVQNL-KNLESEKLEK 580          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_RICTY (Chaperone protein htpG OS=Rickettsia typhi GN=htpG PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.643e-17
Identity = 63/234 (26.92%), Postives = 109/234 (46.58%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVI----KDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKDLVLL 691
            KF+ +F   LK G+ E +T+  KL E+  + S    +++ S+ +Y+   KEGQN IYY++G++   + +SP +E L  K  +VL   D +D++ V    E++G  + SAT                           K++    K++LG               P CL   +      MER +    +    +A   +S K +E+NP+N I+E++    D   N+K+ ++LV L
Sbjct:  365 KFWTNFGGALKEGLCEATTDHEKLLEVCIFRSALH-NKMISIDEYIANFKEGQNTIYYLSGDNPDKLLSSPQIEGLLNKNIDVLLFTDTVDDFWVNVNSEYKGYAIKSATRSDIDVEHTTSRPQDKNTDSKKSDDEYKLLTDYFKEILGELVKEVKISKKLTLSPACLAVSDTAMDIRMERFL----IEQKQIAS--ASAKNLELNPKNKIIEKIFN--DLKANNKNNEELVNL 589          
The following BLAST results are available for this feature:
BLAST of FC920860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
HTPG_HELPH3.122e-1846.08Chaperone protein htpG OS=Helicobacter pylori (str... [more]
HTPG_HELPJ5.326e-1846.08Chaperone protein htpG OS=Helicobacter pylori J99 ... [more]
HTPG_DESDG5.326e-1828.07Chaperone protein htpG OS=Desulfovibrio desulfuric... [more]
HTPG_CHLCH5.326e-1826.67Chaperone protein htpG OS=Chlorobium chlorochromat... [more]
HTPG_WOLPM1.186e-1728.57Chaperone protein htpG OS=Wolbachia pipientis wMel... [more]
HTPG_ALKMQ1.186e-1726.52Chaperone protein htpG OS=Alkaliphilus metalliredi... [more]
HTPG_RICPR1.549e-1727.35Chaperone protein htpG OS=Rickettsia prowazekii GN... [more]
HTPG_METRJ1.549e-1729.95Chaperone protein htpG OS=Methylobacterium radioto... [more]
HTPG_BORGA2.024e-1727.03Chaperone protein htpG OS=Borrelia garinii GN=htpG... [more]
HTPG_RICTY2.643e-1726.92Chaperone protein htpG OS=Rickettsia typhi GN=htpG... [more]

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Properties
Property NameValue
Genbank descriptionC32013H09EF RVDevelop1 Citrus clementina cDNA clone C32013H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920860 ID=FC920860; Name=FC920860; organism=Citrus clementina; type=EST; length=691bp
GAAGTTTTATGAGTCATTCTCCAAGAACCTAAAGCTTGGTATCCATGAGG
ACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCATTCCACC
AAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAGAATGAA
GGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTG
TTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTG
CTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGA
GTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCAAGCTTG
ACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACCTTGAAGGAGAAATTT
GAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAA
GGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTG
GTGAGTATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCC
TTGAGAGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGA
GATCAATCCGGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGGCTGATG
CTGACAAGAATGACAAGTCTGTGAAGGACCTTGTCCTTCTG
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