FC920860

Overview
NameFC920860
Unique NameFC920860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920860_ssr366 microsatellite FC920860_ssr366:366..377. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15313 contig Ccv1_Contig15313:14..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJD (Chaperone protein htpG OS=Campylobacter jejuni subsp. doylei (strain ATCC BAA-1458 / RM4099 / 269.97) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS 325
            F+++F K LK G++     K  L +L+ Y STK G+ L SL++Y   ++  Q +I+YI G ++  +  SP LE+ K+K  EVL M D ID      L EFEG K V+
Sbjct:  370 FFKTFGKVLKEGLYGFGGEKDSLLKLMLYKSTK-GENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEVLLMDDEIDSLVTPML-EFEGLKFVA 474          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJ8 (Chaperone protein htpG OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=htpG PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.950e-13
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS 325
            F+++F K LK G++     K  L +L+ Y STK G+ L SL++Y   ++  Q +I+YI G ++  +  SP LE+ K+K  EVL M D ID      L EFEG K V+
Sbjct:  370 FFKTFGKVLKEGLYGFGGEKDSLLKLMLYKSTK-GENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEVLLMDDEIDSLVTPML-EFEGLKFVA 474          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_CAMJR (Chaperone protein htpG OS=Campylobacter jejuni (strain RM1221) GN=htpG PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS 325
            F+++F K LK G++     K  L +L+ Y STK G+ L SL++Y   ++  Q +I+YI G ++  +  SP LE+ K+K  EVL M D ID      L EFEG K ++
Sbjct:  370 FFKTFGKVLKEGLYGFGGEKDSLLKLMLYKSTK-GENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEVLLMDDEIDSLVTPML-EFEGLKFIA 474          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SULNB (Chaperone protein htpG OS=Sulfurovum sp. (strain NBC37-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYM----VDAIDEYAVGQLKEFEGKKLVS 325
            F E +++ +K GI+ D TNK  L  ++RY S+ S + + SL DY++R    + +IYYI G  +K + NSP LE  KK   EVL M    VD+I    +G  KE+  K + +
Sbjct:  374 FTEQYNRVIKEGIYTDHTNKETLLGIVRYKSS-SEEGMVSLDDYISRGDSEKKEIYYIVGADEKVLRNSPLLEAYKKANIEVLIMDDEEVDSIVAPMIGSYKEWTFKDITT 483          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_METS4 (Chaperone protein htpG OS=Methylobacterium sp. (strain 4-46) GN=htpG PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 41/109 (37.61%), Postives = 65/109 (59.63%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F+++F   LK GI ED+ ++  +A LLR+ ST + +  TS  DYV+RMK  Q  IY + G+   A+  S  +E  + +G EVL + D +D +   +L +F+GK + S T
Sbjct:  363 FWQAFGPVLKEGIWEDAEHRDDIAALLRFRST-AVEGWTSFADYVSRMKPNQEAIYILVGDDAAALARSAQIEGFRARGIEVLLLSDHVDAFWPERLDKFDGKPIRSIT 470          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_METNO (Chaperone protein htpG OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=htpG PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 40/109 (36.70%), Postives = 66/109 (60.55%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F+++F   LK GI ED+  +  +A L+R+ S+ + +  TS  DYV+RMK  Q  IY + G+  KA+ +S  +E  + +G EVL + D +D +   +L +F+GK + S T
Sbjct:  363 FWQAFGPVLKEGIWEDAEQRDDIAGLIRFRSS-AVEGWTSFADYVSRMKPNQEAIYILVGDDTKALASSAQIEGFRARGIEVLLLSDHVDAFWPERLDKFDGKPIRSIT 470          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_FUSNN (Chaperone protein htpG OS=Fusobacterium nucleatum subsp. nucleatum GN=htpG PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 40/109 (36.70%), Postives = 70/109 (64.22%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHED-STNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS 325
            +F++ F +++K G+ +    NK KL +LL + S+   D+ T+LK+YV RM + + +I Y+  ES  A +  P +EKLK++G EVL + D IDE+ +  ++++ GK+  S
Sbjct:  360 EFWKEFGRSIKAGVQDMFGMNKEKLQDLLIFVSSHD-DKYTTLKEYVDRMGDNK-EILYVPAESVDAAKYLPKMEKLKEQGREVLILTDKIDEFTLMAMRDYSGKEFKS 466          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ANAMM (Chaperone protein htpG OS=Anaplasma marginale (strain St. Maries) GN=htpG PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 38/112 (33.93%), Postives = 67/112 (59.82%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHE--DSTNKTKLAELLRYHSTKSGD-ELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT 331
            F+E+F   LK G+ E  D+ ++  +  + R++S+ S + EL SL DY++RMK GQ  I+Y++G   ++   SP +E +   G EV+ +VD +D++    + E++G    S T
Sbjct:  366 FWENFGPVLKEGLCEAMDTESRESILSVCRFYSSNSKEGELISLGDYISRMKPGQEHIFYLSGNDLESAMRSPQIEGMVSNGIEVVLLVDPVDDFWTSVVLEYKGVPFKSVT 477          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_CAMHC (Chaperone protein htpG OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=htpG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFE 307
            KFY+ F K LK G+   ST K ++ +L  + S+K+G EL  L +Y   M   Q +IYYI+G   + ++NSP LE+   K  EVL   D ID   +  + EF+
Sbjct:  372 KFYKLFGKVLKEGLWGFSTEKDEILKLCLFKSSKTG-ELIDLAEYKKSMAAEQKEIYYISGGKAETLKNSPLLEEFNAKNIEVLICDDEIDTIIMPMIGEFD 472          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_TREPA (Chaperone protein htpG OS=Treponema pallidum GN=htpG PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 55/222 (24.77%), Postives = 93/222 (41.89%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSG---DELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEY---AVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            +F   +++ LK G++ D  ++ +L EL+R+ +       D  TS  +YV+RMK  Q  IYYI G   + +  SP  E  + +G+EVL M D ID     +V + KE+E + +                               + +  +L                  C+V  E   T  MER+M+A      S       K  +EIN  + ++++L++  D
Sbjct:  385 EFITQYNRPLKEGLYSDYEHREQLLELVRFRTLSESVPEDGWTSFAEYVSRMKPDQKAIYYIAGNDDRVLRQSPHAESYRLQGFEVLVMSDDIDGIVMPSVSKYKEWELRAI--NRLGSEEELRPNEETDAAAQREQGFKPLLERLTHILSDSVKEVRLSKRLSDSVSCIVIDENDPTVQMERLMRATGQTHKS-----KIKPILEINASHTLVQKLKESTD 599          
The following BLAST results are available for this feature:
BLAST of FC920860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
HTPG_CAMJD3.950e-1340.19Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_CAMJ83.950e-1340.19Chaperone protein htpG OS=Campylobacter jejuni sub... [more]
HTPG_CAMJR5.158e-1339.25Chaperone protein htpG OS=Campylobacter jejuni (st... [more]
HTPG_SULNB6.737e-1338.74Chaperone protein htpG OS=Sulfurovum sp. (strain N... [more]
HTPG_METS46.737e-1337.61Chaperone protein htpG OS=Methylobacterium sp. (st... [more]
HTPG_METNO8.799e-1336.70Chaperone protein htpG OS=Methylobacterium nodulan... [more]
HTPG_FUSNN1.501e-1236.70Chaperone protein htpG OS=Fusobacterium nucleatum ... [more]
HTPG_ANAMM2.560e-1233.93Chaperone protein htpG OS=Anaplasma marginale (str... [more]
HTPG_CAMHC9.728e-1239.22Chaperone protein htpG OS=Campylobacter hominis (s... [more]
HTPG_TREPA1.659e-1124.77Chaperone protein htpG OS=Treponema pallidum GN=ht... [more]

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Properties
Property NameValue
Genbank descriptionC32013H09EF RVDevelop1 Citrus clementina cDNA clone C32013H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920860 ID=FC920860; Name=FC920860; organism=Citrus clementina; type=EST; length=691bp
GAAGTTTTATGAGTCATTCTCCAAGAACCTAAAGCTTGGTATCCATGAGG
ACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCATTCCACC
AAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAGAATGAA
GGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTG
TTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTG
CTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGA
GTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCAAGCTTG
ACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACCTTGAAGGAGAAATTT
GAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAA
GGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTG
GTGAGTATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCC
TTGAGAGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGA
GATCAATCCGGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGGCTGATG
CTGACAAGAATGACAAGTCTGTGAAGGACCTTGTCCTTCTG
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