FC920860

Overview
NameFC920860
Unique NameFC920860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920860_ssr366 microsatellite FC920860_ssr366:366..377. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15313 contig Ccv1_Contig15313:14..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_CHRVO (Chaperone protein htpG OS=Chromobacterium violaceum GN=htpG PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.351e-29
Identity = 80/220 (36.36%), Postives = 114/220 (51.82%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDE--LTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            +F++ F + LK G+ ED  NK ++A+LLR+ ST S D     SL DY+ RMKEGQ+ IYYIT ++  A +NSP LE  KKKG EVL + D +DE+  G L EF+GK L S                              V  ++  LG               P CLV GE+  +A++ER++KA   +         SK T+EINPE+ +++ L + +D
Sbjct:  376 EFWKEFGQVLKEGVGEDFANKERIAKLLRFVSTASEDAEPTVSLADYIGRMKEGQDKIYYITADTLAAAKNSPHLEVFKKKGVEVLLLTDRVDEWVTGSLFEFDGKALQSVAKGALDLGALEDEADKEAQKQVEEASKPVVEKVQKALGDKVKEVRATARLVESPACLVAGEHDMSAHLERMLKAAGQK------IEGSKPTLEINPEHVLVKRLAEESD 589          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_THIDA (Chaperone protein htpG OS=Thiobacillus denitrificans (strain ATCC 25259) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.134e-29
Identity = 83/223 (37.22%), Postives = 113/223 (50.67%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDE--LTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADK 658
            +F++ F K +K G  ED  NK K+A LLR+ ST +  +  + SLKDYV RMKEGQ  IYYIT +S  A ++SP LE  +KKG EVL + D +DE+  G L EF+GK L S                              V  IK +LG               P CLVTGE   +AN+ER++KA      ++      K T+EINP + ++  L   +D D+
Sbjct:  378 EFWKEFGKVMKEGPGEDFANKEKIAGLLRFASTHTDTDAQVVSLKDYVGRMKEGQTAIYYITADSFAAAQHSPHLEIFRKKGIEVLLLSDRVDEWLTGNLHEFDGKPLKSVAKGGLDLGELEDEAEKTAQKEAEESMKPLVERIKAMLGERVKDVRVTHRLTDSPACLVTGEGDMSANLERLLKAAGQAAPTV------KPTLEINPSHALVTRLDSESDEDR 594          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_GEOMG (Chaperone protein htpG OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.134e-29
Identity = 77/229 (33.62%), Postives = 115/229 (50.22%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKS-GDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS---ATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKD 679
            FY+ F + LK G+H D  N+ KL +LL + ST++   + TSLK+YV RM  GQ +IY+ITG S+ A+E SP LE  +KK YEVL++ D +DE+ V  + E++GKKL +                                  +K+ L                 CCLV  E+G  ANMERI++A             SK+ +E+NP++P+M+ +      DK +  + D
Sbjct:  387 FYKEFGQVLKEGVHFDYANREKLQDLLLFESTRTEAGKFTSLKEYVERMPAGQEEIYFITGTSRTALEQSPHLEIFRKKEYEVLFLTDPVDEWVVQGVTEYDGKKLKAVDRGDVIPATEEEKKEQEAKREEAFKQYGDLLSFVKEKLDARVKEVRLSSRLTDSACCLVADEHGLNANMERILRAM------NQDVPESKRILELNPDHPLMQVMANLFARDKANPRLGD 609          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_FRATH (Chaperone protein htpG OS=Francisella tularensis subsp. holarctica (strain LVS) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 77/222 (34.68%), Postives = 116/222 (52.25%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGD--ELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGK--KLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD 655
            KF++SF + LK G+ +D +NK K+A LLR+ +T+SGD  +  SL DY++RMKE Q+ IYYIT +S KA  N+P LE  KKKG EV+ M D IDE+ +  L EF+ K  K +                              K IK+VL                P C+V  +YG + +M+++M+       S    M  K  +E+N E+ ++++L+  AD +
Sbjct:  374 KFWDSFGQVLKEGVSDDYSNKEKIAGLLRFATTQSGDSKQTVSLADYISRMKESQDTIYYITSDSYKAAANNPQLEAFKKKGIEVILMTDRIDEWMMSTLTEFDDKHMKSIIKGDIDLDKFETPENKEKFEKEAKDFEKVLKEIKEVLKDKVEDVRLSKRLTDSPSCVVVNDYGMSLHMQKMMEEAG---QSFMPGMGMKPILELNAEHNLVQKLKNEADTE 592          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_FRATF (Chaperone protein htpG OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=htpG PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.706e-29
Identity = 77/222 (34.68%), Postives = 116/222 (52.25%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGD--ELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGK--KLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD 655
            KF++SF + LK G+ +D +NK K+A LLR+ +T+SGD  +  SL DY++RMKE Q+ IYYIT +S KA  N+P LE  KKKG EV+ M D IDE+ +  L EF+ K  K +                              K IK+VL                P C+V  +YG + +M+++M+       S    M  K  +E+N E+ ++++L+  AD +
Sbjct:  374 KFWDSFGQVLKEGVSDDYSNKEKIAGLLRFATTQSGDSKQTVSLADYISRMKESQDTIYYITSDSYKAAANNPQLEAFKKKGIEVILMTDRIDEWMMSTLTEFDDKHMKSIIKGDIDLDKFETPENKEKFEKEAKDFEKVLKEIKEVLKDKVEDVRLSKRLTDSPSCVVVNDYGMSLHMQKMMEEAG---QSFMPGMGMKPILELNAEHNLVQKLKNEADTE 592          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_METFK (Chaperone protein htpG OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=htpG1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.328e-28
Identity = 80/223 (35.87%), Postives = 112/223 (50.22%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSG--DELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADK 658
            KF++ F + LK G  ED  NK ++A LLR+ ST +   +++ S KDY+ RMKEGQ  IYYIT +S  A ++SP LE  +KKG EVL + D +DE+ V  L EF+GKKL S                              V  I+  LG               P CLV GE+  + N+ER++KA   +         SK  +EINP++ I++ L+   D  K
Sbjct:  377 KFWKEFGRVLKEGPGEDFANKERIAGLLRFASTHADTDEQVVSFKDYIARMKEGQEAIYYITADSFAAAKHSPHLEIFRKKGIEVLLLSDRVDEWLVSSLTEFDGKKLQSVAKGDLDLGKLEDEAEKEQQKKTEDEYKPLVERIQAALGDSVKEVRVTHRLTDSPACLVAGEHDLSGNLERLLKAAGQKT------PGSKPILEINPDHGIVQRLKDVTDEAK 593          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_PELPD (Chaperone protein htpG OS=Pelobacter propionicus (strain DSM 2379) GN=htpG PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 82/231 (35.50%), Postives = 113/231 (48.92%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKS-GDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVS---ATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA--QALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKNDKSVKD 679
            F++ F   LK G+H D  NK KL EL  + ST +     TSLK+YV RM E Q +IY+ITG+S+  ++ SP LE  K KGYEVL++ D +DE+ V  L E++ KKL +                                  IK  L                 CCLV  EYG  ANMERI+KA  Q + D        SK+ +E+NP++PIM+ + +    +K D  + D
Sbjct:  386 FWKEFGPVLKEGLHFDYANKEKLQELALFESTATEAGSFTSLKEYVERMPEAQQEIYFITGDSRATLKISPHLEAFKAKGYEVLFLTDPVDEWVVQALTEYKEKKLKAVDRGDVDLDSEEEKKEKETKQEEARKEYGDLISFIKSHLEDRVKDARLSKRLTDSACCLVADEYGINANMERILKAMNQPVPD--------SKRVLELNPDHPIMKIMTEIFRENKEDARLTD 608          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_AZOSE (Chaperone protein htpG OS=Azoarcus sp. (strain EbN1) GN=htpG PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.346e-28
Identity = 79/215 (36.74%), Postives = 108/215 (50.23%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSG--DELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSAT--XXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELR 637
            F++ F   LK G+ ED  NK K+A LLR+ ST +   DE+ SL DY+ RMKEGQ+ IYY+T ES  A +NSP LE  +KKG EVL + D +DE+ +G L EF+GK LVS                               + +K  LG               P CLV  E+    N+ RI+KA   +        +SK  +EINP++P +  L+
Sbjct:  391 FWKEFGPVLKEGVGEDFANKDKIAGLLRFASTHADTPDEVVSLADYLARMKEGQDKIYYVTAESFNAAKNSPHLEIFRKKGIEVLLLTDRVDEWVIGNLPEFDGKALVSVAKGGLDLGKLEDEAEKKETEKAADEYKELLEKMKASLGERVKEVRVTHRLTDSPACLVADEHDVGMNLARILKAAGQQ------APASKPILEINPQHPAVMRLK 599          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHEDO (Chaperone protein htpG OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.652e-27
Identity = 81/219 (36.99%), Postives = 106/219 (48.40%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELT--SLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            F+  F + LK G  ED  NK ++A LLR+ ST  G   T  SL+DY++RMKEGQ+ IYYI  +S +A  NSP LE L+KKG EVL M + IDE+ +  L EF+GKKL S T                            V  +K  LG               P C+V GE   +  M ++M+A             SK T EINP +P++  L   AD
Sbjct:  383 FWAEFGQVLKEGPAEDFANKERIAGLLRFASTHEGSAATTVSLEDYISRMKEGQDKIYYIVADSHEAAANSPHLELLRKKGIEVLLMSERIDEWLINHLTEFKGKKLHSVTRGDLELGELEDAADKEAKDKITEEAKGLVERMKAALGAKVSEVKVTTRLTDTPACVVAGEGEMSTQMIKLMQAAG------QAVPESKPTFEINPNHPLVARLNDEAD 595          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHEHH (Chaperone protein htpG OS=Shewanella halifaxensis (strain HAW-EB4) GN=htpG PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.817e-27
Identity = 80/222 (36.04%), Postives = 107/222 (48.20%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELT--SLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXX--CKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADK 658
            F+  F + LK G  ED  NK ++A LLR+ ST +G+     SL DYV RMKEGQ+ IY+I  +S +A  NSP LE L+KKG EVL M + IDE+ +  L EF+GKKL S T                             K +KD LG               P C+V GE   +  M ++M+A             SK T E+NPE+P++  L    D  +
Sbjct:  385 FWTEFGQVLKEGPAEDFANKERVAGLLRFASTHTGEATANVSLADYVERMKEGQSKIYFIVADSYEAAANSPHLELLRKKGIEVLLMSERIDEWLINHLTEFDGKKLHSVTRGDLELGELEDASEKEAQEKLETESEGLVKRVKDSLGDKVSAVKVTTRLTDTPACVVAGEGEMSTQMIKLMQAAG------QDVPESKPTFELNPEHPLVARLNDEQDEQR 600          
The following BLAST results are available for this feature:
BLAST of FC920860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
HTPG_CHRVO1.351e-2936.36Chaperone protein htpG OS=Chromobacterium violaceu... [more]
HTPG_THIDA5.134e-2937.22Chaperone protein htpG OS=Thiobacillus denitrifica... [more]
HTPG_GEOMG5.134e-2933.62Chaperone protein htpG OS=Geobacter metallireducen... [more]
HTPG_FRATH6.706e-2934.68Chaperone protein htpG OS=Francisella tularensis s... [more]
HTPG_FRATF6.706e-2934.68Chaperone protein htpG OS=Francisella tularensis s... [more]
HTPG_METFK3.328e-2835.87Chaperone protein htpG OS=Methylobacillus flagella... [more]
HTPG_PELPD4.346e-2835.50Chaperone protein htpG OS=Pelobacter propionicus (... [more]
HTPG_AZOSE4.346e-2836.74Chaperone protein htpG OS=Azoarcus sp. (strain EbN... [more]
HTPG_SHEDO1.652e-2736.99Chaperone protein htpG OS=Shewanella denitrificans... [more]
HTPG_SHEHH2.817e-2736.04Chaperone protein htpG OS=Shewanella halifaxensis ... [more]

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Properties
Property NameValue
Genbank descriptionC32013H09EF RVDevelop1 Citrus clementina cDNA clone C32013H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920860 ID=FC920860; Name=FC920860; organism=Citrus clementina; type=EST; length=691bp
GAAGTTTTATGAGTCATTCTCCAAGAACCTAAAGCTTGGTATCCATGAGG
ACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCATTCCACC
AAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAGAATGAA
GGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTG
TTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTG
CTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGA
GTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCAAGCTTG
ACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACCTTGAAGGAGAAATTT
GAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAA
GGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTG
GTGAGTATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCC
TTGAGAGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGA
GATCAATCCGGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGGCTGATG
CTGACAAGAATGACAAGTCTGTGAAGGACCTTGTCCTTCTG
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