FC920860

Overview
NameFC920860
Unique NameFC920860
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920860_ssr366 microsatellite FC920860_ssr366:366..377. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15313 contig Ccv1_Contig15313:14..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: H90B4_HUMAN (Putative heat shock protein HSP 90-beta 4 OS=Homo sapiens GN=HSP90AB4P PE=5 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.817e-27
Identity = 71/169 (42.01%), Postives = 91/169 (53.85%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEY 508
            K  E FSK   LGIHEDS N   L+ELL  H+ +SGDE+TSL +YV+ MKE Q  I  I GE K+ V NS F+E+  KKG+EV+YM + IDEY V QLKEF+GK L+S T                          C+++K++L                PC +VT  Y
Sbjct:  336 KLDEVFSKISWLGIHEDSINWRHLSELLWSHTFQSGDEMTSLSEYVSCMKEAQKSICDIIGECKEQVANSAFVEQEWKKGFEVIYMSEPIDEYCVQQLKEFDGKSLLSVTKEGLELPEDEEEKKIMEESNVKFENLCRLMKEILDKKVERVTISSRLVSSPCRIVTSTY 504          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_BORA1 (Chaperone protein htpG OS=Bordetella avium (strain 197N) GN=htpG PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.680e-27
Identity = 74/221 (33.48%), Postives = 114/221 (51.58%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGD--ELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD 655
            F+  F + LK G+ ED +N+ ++A+LLR+ ST +GD  + TSL+DY+ R+KEGQ+ IYY+T +S  A  NSP LE  +KKG EVL + D +DE+ +  L+EFEGK LVS                              +  ++  LG               P C+V G+   + ++ R++KA       +      K  +EINPE+ ++  +R  +DAD
Sbjct:  379 FWGEFGQVLKEGVGEDPSNQERIAKLLRFASTHAGDASQTTSLQDYLGRLKEGQDKIYYVTADSYSAASNSPHLEIFRKKGIEVLLLWDRVDEWMLSHLREFEGKSLVSVAKGGLDLADLADEEEKKKQTEVAESFKPLIERLQTALGEQVKEVRVTLRLVDSPACVVVGQNDLSPHLLRMLKAAGQEVPEV------KPVLEINPEHALIARIRDVSDAD 593          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHELP (Chaperone protein htpG OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 78/221 (35.29%), Postives = 107/221 (48.42%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGD--ELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXX--CKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADAD 655
            F+  F + LK G  ED  NK K+A LLR+ ST + +     SL DYV RMKEGQ+ IYYI  +S +A  NSP LE L+KKG EVL M + IDE+ +  L EF+GK+L S T                             K +K+VLG               P C+V G    ++ M ++M+A             SK   E+NPE+P+++ L    D +
Sbjct:  385 FWAEFGQVLKEGPAEDFANKEKIAGLLRFASTHTNEAAHTVSLSDYVERMKEGQSKIYYIVADSHEAAANSPHLELLRKKGIEVLLMSERIDEWLINHLSEFDGKQLHSVTRGDLELGELEDAAEKEAQEKLETESEGLVKRVKEVLGDKVAEVKVTSRLTDTPACVVAGAGEMSSQMIKLMQAAG------QAVTESKPVFELNPEHPLVKRLDTEQDEE 599          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_DECAR (Chaperone protein htpG OS=Dechloromonas aromatica (strain RCB) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.197e-27
Identity = 75/216 (34.72%), Postives = 109/216 (50.46%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKS--GDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKL--VSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELR 637
            KF+E+F   LK G+ ED  NK K+A L+R+ ST +   ++  SL DY+ RMKEGQ  IY++T ++  A +NSP LE  +KKG EVL + D +DE+ VG L EF+GK L  V+                             + +K  LG               P CLV+ E+  + N+ R+MKA            +SK  +EINP++P +  L+
Sbjct:  382 KFWEAFGSVLKEGVGEDHANKEKIAGLIRFSSTHNDTAEQNVSLADYIGRMKEGQEKIYFVTADTFNAAKNSPHLEIFRKKGIEVLLLSDRVDEWVVGHLTEFDGKHLQSVAKGGLDLGKLEDEAEKQEAEKAADDYKELLEKVKTSLGDKVKDVRVTYRLTDSPSCLVSDEHDPSGNLARLMKAAG------QPMPNSKPILEINPQHPAVMRLK 591          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHEPA (Chaperone protein htpG OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=htpG PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.071e-26
Identity = 78/219 (35.62%), Postives = 105/219 (47.95%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDEL--TSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXX--CKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            F+  F + LK G  ED  NK ++A LLR+ ST +G+     SL DY+ RM+EGQ+ IYYI  +S +A  NSP LE L+KKG EVL M + IDE+ +  L EF+GKKL S T                             K +KD LG               P C+V GE   +  M ++M+A              K T E+NPE+P++  L    D
Sbjct:  384 FWTEFGQVLKEGPAEDFANKERIAGLLRFASTHTGEATPNVSLADYIERMQEGQSKIYYIVADSHEAAANSPHLELLRKKGIEVLLMSERIDEWLINHLTEFDGKKLHSVTRGDLELGELEDDDEKEAQEKLQTESEGLVKRVKDSLGDKVSEVKVTTRLTDTPACVVAGEGEMSTQMIKLMQAAG------QDVPEPKPTFELNPEHPLVARLNDEQD 596          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_SHESH (Chaperone protein htpG OS=Shewanella sediminis (strain HAW-EB3) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.398e-26
Identity = 79/219 (36.07%), Postives = 106/219 (48.40%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDEL--TSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXX--CKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRAD 649
            F+  F + LK G  ED  NK ++A LLR+ ST + D     SL DYV+RM+EGQ+ IYYI  +S +A  NSP LE L+KKG EV+ M + IDE+ +  L +F+GK+L S T                             K IKD LG               P C+V GE   +  M ++M+A             SK T EINPE+P++  L    D
Sbjct:  384 FWAEFGQVLKEGPAEDMVNKERIAGLLRFASTHTEDAAPTVSLADYVSRMQEGQSKIYYIVADSHEAAANSPHLELLRKKGIEVVLMSERIDEWLINHLTDFDGKQLHSVTRGDLELGDLEDAGEKEAQEKLETESEGLVKRIKDSLGEKVSAVKVTTRLTDTPACVVAGEGEMSTQMIKLMEAAG------QAVPESKPTFEINPEHPLVARLNDEQD 596          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_HAHCH (Chaperone protein htpG OS=Hahella chejuensis (strain KCTC 2396) GN=htpG PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.385e-26
Identity = 81/226 (35.84%), Postives = 111/226 (49.12%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDE--LTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKL--VSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKA--QALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADKND 664
            F++ F + LK G  ED  N+ K+A+L+R+ ST   D+    SL+DYV+RMK+GQ+ IYYIT ES  A   SP LE  +KKG EVL M D IDE+ +  L EF+GK    ++                               +K+VL                P CLV G Y     M RIM+A  QAL +        SK T EINP++P++++L +   A   D
Sbjct:  386 FWDEFGRVLKEGPAEDFINREKIAKLMRFSSTHQDDDKQTQSLEDYVSRMKQGQDKIYYITAESYSAGVKSPHLEIFRKKGIEVLVMHDRIDEWLMSHLNEFDGKHFQDIAKGELDLGEVEDKEEKEKQEEVSKEAEPLLNRLKEVLKDHVEEVRVTHRLTDSPACLVVGAYDMGVQMRRIMEAAGQALPE--------SKPTFEINPDHPLVKKLGEEQGARFED 603          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_MARMS (Chaperone protein htpG OS=Marinomonas sp. (strain MWYL1) GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.068e-26
Identity = 74/223 (33.18%), Postives = 107/223 (47.98%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKS--GDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADK 658
            KF++ F   +K G  +D  NK K+A LLR+ ST +    +  SL DY+ RM+EGQ+ IYYI  ES    +NSP LE L+KKG+EVL + D IDE+ +  L+EFEGK     T                            +  +K VL                P CLV GEY     M R+++    +         SK T+E+NP++PI+ ++    D ++
Sbjct:  387 KFWDEFGNVIKEGPADDMGNKDKIAGLLRFSSTHTDAAAQTVSLADYIERMQEGQDKIYYIYAESHNTAKNSPHLEILRKKGFEVLLLSDRIDEWMMSSLQEFEGKSFQDVTKGKLDLADQENEEEKKEKEEKAEKMKPLLDRMKAVLNEKVAGVNSTDRLTNSPACLVVGEYDMGLQMRRLLEQAGQK------LPESKPTLEVNPDHPIVAKMDSETDEER 603          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_ALHEH (Chaperone protein htpG OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=htpG PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.068e-26
Identity = 74/217 (34.10%), Postives = 108/217 (49.77%), Query Frame = 2
Query:    2 KFYESFSKNLKLGIHEDSTNKTKLAELLRYHSTKSGDEL--TSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGK--KLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKVIKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYM--SSKKTMEINPENPIMEEL 634
            +FY +F K LK G+ ED  N+ ++A+LLR+ +T+  +E    SL DY+ RMKEGQ  IYY+T ES  A  NSP LE  +KKG EVL + D +DE+ +  L E++GK  K V+                             + +K  L                P CLV GEY +   M+R++KA        AG+     K  +EIN ++PI++ +
Sbjct:  385 EFYGNFGKVLKEGVAEDFANRERIAKLLRFSTTQDENETPDVSLDDYIARMKEGQEAIYYVTAESFNAARNSPHLEVFRKKGVEVLLLPDPVDEWVITHLNEYDGKPLKSVAKGGLDLGELEDQAEKKAAEEATESHKDLLEKLKGALEDKVSEVRVSTRLTDSPACLVVGEYDFGMGMQRLLKA--------AGHAMPQGKPALEINIDHPIVQRM 593          
BLAST of FC920860 vs. ExPASy Swiss-Prot
Match: HTPG_PSEAE (Chaperone protein htpG OS=Pseudomonas aeruginosa GN=htpG PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.313e-26
Identity = 77/222 (34.68%), Postives = 108/222 (48.65%), Query Frame = 2
Query:    5 FYESFSKNLKLGIHEDSTNKTKLAELLRYHST--KSGDELTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVLYMVDAIDEYAVGQLKEFEGKKLVSATXXXXXXXXXXXXXXXXXXXXXXXXXXCKV--IKDVLGXXXXXXXXXXXXXXXPCCLVTGEYGWTANMERIMKAQALRDNSMAGYMSSKKTMEINPENPIMEELRKRADADK 658
            F+++F + LK G  ED  NK K+A LLR+ ST   SG++  +L DY+ RMKEGQ+ IYY+TGES   V+NSP LE  +KKG EVL + D IDE+ +  L EF+GK+ V                               +  +K VL                P  L  GE      M +I++A   +         SK   EINP++P++E+L    D D+
Sbjct:  380 FWKNFGQVLKEGPAEDFGNKEKIAGLLRFASTGDDSGEQSVALADYIGRMKEGQDKIYYLTGESYSQVKNSPHLEVFRKKGIEVLLLTDRIDEWLMSYLPEFDGKQFVDVARGDLDLGSLDSEEDKKAQEEVAKSKEGLIERLKKVLDEQVSEVRVSHRLTDSPAILAIGEQDLGLQMRQILEASGQK------VPDSKPIFEINPQHPLIEKLDAEPDEDR 595          
The following BLAST results are available for this feature:
BLAST of FC920860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 370
Match NameE-valueIdentityDescription
H90B4_HUMAN2.817e-2742.01Putative heat shock protein HSP 90-beta 4 OS=Homo ... [more]
HTPG_BORA13.680e-2733.48Chaperone protein htpG OS=Bordetella avium (strain... [more]
HTPG_SHELP8.197e-2735.29Chaperone protein htpG OS=Shewanella loihica (stra... [more]
HTPG_DECAR8.197e-2734.72Chaperone protein htpG OS=Dechloromonas aromatica ... [more]
HTPG_SHEPA1.071e-2635.62Chaperone protein htpG OS=Shewanella pealeana (str... [more]
HTPG_SHESH1.398e-2636.07Chaperone protein htpG OS=Shewanella sediminis (st... [more]
HTPG_HAHCH2.385e-2635.84Chaperone protein htpG OS=Hahella chejuensis (stra... [more]
HTPG_MARMS4.068e-2633.18Chaperone protein htpG OS=Marinomonas sp. (strain ... [more]
HTPG_ALHEH4.068e-2634.10Chaperone protein htpG OS=Alkalilimnicola ehrliche... [more]
HTPG_PSEAE5.313e-2634.68Chaperone protein htpG OS=Pseudomonas aeruginosa G... [more]

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Properties
Property NameValue
Genbank descriptionC32013H09EF RVDevelop1 Citrus clementina cDNA clone C32013H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920860 ID=FC920860; Name=FC920860; organism=Citrus clementina; type=EST; length=691bp
GAAGTTTTATGAGTCATTCTCCAAGAACCTAAAGCTTGGTATCCATGAGG
ACTCCACCAACAAGACCAAGCTTGCTGAGCTGCTCCGATACCATTCCACC
AAGAGTGGTGATGAGTTGACTAGCTTGAAGGATTATGTGACCAGAATGAA
GGAAGGCCAGAATGATATCTACTACATCACTGGTGAGAGCAAGAAGGCTG
TTGAGAACTCCCCATTTCTTGAGAAGCTCAAGAAGAAGGGCTATGAAGTG
CTCTACATGGTTGATGCCATAGATGAGTACGCTGTTGGTCAGCTCAAGGA
GTTTGAGGGAAAGAAGCTTGTCTCAGCAACCAAAGAAGGTCTCAAGCTTG
ACGAGAGTGAAGATGAGAAGAAGAAGAAGGAAACCTTGAAGGAGAAATTT
GAGGGTCTCTGCAAGGTGATCAAGGATGTTTTGGGTGACAAGGTCGAGAA
GGTTGTGGTGTCTGACCGTGTTGTTGACTCACCCTGCTGTTTGGTGACTG
GTGAGTATGGATGGACAGCCAACATGGAGAGGATCATGAAGGCTCAGGCC
TTGAGAGACAACAGCATGGCTGGTTACATGTCCAGCAAGAAGACCATGGA
GATCAATCCGGAGAACCCCATCATGGAGGAGCTCAGGAAGAGGGCTGATG
CTGACAAGAATGACAAGTCTGTGAAGGACCTTGTCCTTCTG
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