FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.281e-41
Identity = 79/138 (57.25%), Postives = 109/138 (78.99%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            LTE VRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDF+NTVI+MTSN+G++H+    MG    +  ++ V+++V++HFRPE++NR+DE+VVF  L    +R +A++Q+K +  RL ++ + LAV+DA
Sbjct:  666 LTEQVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQHI--QQMGIQDYEAVKEVVMEDVKEHFRPEMINRIDEVVVFHGLDQANIRSIAKIQLKGLEKRLEKQNLRLAVSDA 801          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 1.176e-40
Identity = 86/140 (61.43%), Postives = 105/140 (75.00%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL--LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            LTEAVRRRPYS++L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG+  +  LSG          +  V+  V+ HFRPE +NRLD+IVVF PL   Q++ +AR+Q++ +  RLAERG+ L + DA
Sbjct:  662 LTEAVRRRPYSLILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELSGDDSAEAYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDDA 801          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CAUCR (Chaperone protein clpB OS=Caulobacter crescentus GN=clpB PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.176e-40
Identity = 85/135 (62.96%), Postives = 104/135 (77.04%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAV 409
            LTEA+RRRPY VVLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNT+IIMTSNLGAE+L S   G+  ++  R  V+  VR HFRPE LNR+DEI++F  LS   +  + R+Q++ V   LA+R +ALA+
Sbjct:  660 LTEAIRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLASQEDGE-DVEAVRPMVMNTVRGHFRPEFLNRIDEIILFKRLSRHNMGDIVRIQLQRVEKLLADRRMALAL 793          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.007e-40
Identity = 85/139 (61.15%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL--LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRRRPYS++L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG+  +  LSG          +  V+  V+ HFRPE +NRLD+IVVF PL   Q++ +AR+Q++ +  RLAERG+ L + D
Sbjct:  662 LTEAVRRRPYSLILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELSGDGSAEAYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKSIARIQLQGLEKRLAERGLKLDLDD 800          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_VIBPA (Chaperone protein clpB OS=Vibrio parahaemolyticus GN=clpB PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.007e-40
Identity = 83/137 (60.58%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG+  +       +  Q  + +V+  V KHFRPE LNR+DEIVVF PL  E ++ +A +Q++ +  RL E+G  L V+D
Sbjct:  662 LTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQEN-FATLDYQGIKSEVMDVVSKHFRPEFLNRVDEIVVFHPLGQEHIKSIASIQLERLAKRLEEKGYQLEVSD 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB2_THEEB (Chaperone protein clpB 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 2.007e-40
Identity = 81/139 (58.27%), Postives = 106/139 (76.26%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEA+RRRPY+VVLFDEVEKAH  VFN LLQVLDDGR+TD QGRTVDFRNTVIIMTSNLG+EH+L         +  R +VLQ  +K+FRPE LNR+D++++F  L   +L ++A++Q++ V   LA++ + L +T A
Sbjct:  675 QLTEAIRRRPYAVVLFDEVEKAHPEVFNVLLQVLDDGRITDSQGRTVDFRNTVIIMTSNLGSEHILDLAADDSRYEEMRQRVLQSAQKYFRPEFLNRIDDVILFHGLGRTELAQIAQIQLRRVEKLLADQKIHLRLTPA 813          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.621e-40
Identity = 84/137 (61.31%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG+  +      ++  Q  ++QV+  V KHFRPE LNR+DE VVF PL  E ++ +A +Q+  +  RLAER   L V D
Sbjct:  662 LTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQEN-FARLDYQGIKEQVMDVVSKHFRPEFLNRVDESVVFHPLGQEHIKSIASIQLARLRQRLAERDYQLEVDD 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_DESVH (Chaperone protein clpB OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=clpB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 2.621e-40
Identity = 82/139 (58.99%), Postives = 107/139 (76.98%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMM-GKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR+PYSVVLFDEVEKAH  VFNTLLQ+LDDGRLTD  GRTVDFRNT+IIMTSN+G+ ++L G+  G   +   R++V++E+R+HFRPE LNR+DE V+F PL   Q+ ++  L +  +  RLAER + + + D
Sbjct:  666 QLTEAVRRKPYSVVLFDEVEKAHPDVFNTLLQILDDGRLTDSHGRTVDFRNTIIIMTSNIGSPYMLDGISEGGEFLSGVREKVMEELRRHFRPEFLNRVDETVLFKPLLPAQIARIVELLLGRLRGRLAERKIDIRLGD 804          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_VIBVY (Chaperone protein clpB OS=Vibrio vulnificus (strain YJ016) GN=clpB PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.423e-40
Identity = 82/137 (59.85%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG+  +       +  Q  ++QV++ V KHFRPE LNR+DE VVF PLS + ++ +A +Q+  +  R+ E G  L V+D
Sbjct:  662 LTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSSRIQEN-FAMLDYQGIKEQVMEVVTKHFRPEFLNRVDETVVFHPLSQDHIKSIAAIQLNRLANRMEEHGYQLEVSD 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.626e-40
Identity = 77/138 (55.80%), Postives = 104/138 (75.36%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR PYSV+LFDE+EKAH  VFN  LQ+LDDGRLTD +G+TVDF+NT+IIMTSN+G+ +LL    G+      R+ V+ E++  F+PE LNR+D+I++F PLS E ++K+  + ++DV  RL ER + L VTD
Sbjct:  668 QLTEAVRRNPYSVILFDEIEKAHDDVFNLFLQILDDGRLTDNKGKTVDFKNTIIIMTSNIGSGYLLENKSGEGIEDDIRENVMNEMKLRFKPEFLNRVDDIIMFRPLSSEGIKKIIDIFLRDVENRLRERNITLEVTD 805          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_NEIMA5.281e-4157.25Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_XANAC1.176e-4061.43Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB_CAUCR1.176e-4062.96Chaperone protein clpB OS=Caulobacter crescentus G... [more]
CLPB_XANCP2.007e-4061.15Chaperone protein clpB OS=Xanthomonas campestris p... [more]
CLPB_VIBPA2.007e-4060.58Chaperone protein clpB OS=Vibrio parahaemolyticus ... [more]
CLPB2_THEEB2.007e-4058.27Chaperone protein clpB 2 OS=Thermosynechococcus el... [more]
CLPB_VIBCH2.621e-4061.31Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_DESVH2.621e-4058.99Chaperone protein clpB OS=Desulfovibrio vulgaris (... [more]
CLPB_VIBVY3.423e-4059.85Chaperone protein clpB OS=Vibrio vulnificus (strai... [more]
CLPB_CLOPE7.626e-4055.80Chaperone protein clpB OS=Clostridium perfringens ... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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