FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_LISMO (Chaperone protein clpB OS=Listeria monocytogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.666e-34
Identity = 70/139 (50.36%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGM-MGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR PYS+VL DE+EKAH  VFN LLQVLDDGR+TD QGR +DF+NTVIIMTSN+G+  LL     G+++ ++  D V+Q ++  F+PE LNR+D+I++F PL+   ++ +    ++++ IRLA++ + + ++D
Sbjct:  667 QLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNTVIIMTSNIGSNLLLERTEEGEISPELESD-VMQILQSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISD 804          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_LISMF (Chaperone protein clpB OS=Listeria monocytogenes serotype 4b (strain F2365) GN=clpB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.666e-34
Identity = 70/139 (50.36%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGM-MGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR PYS+VL DE+EKAH  VFN LLQVLDDGR+TD QGR +DF+NTVIIMTSN+G+  LL     G+++ ++  D V+Q ++  F+PE LNR+D+I++F PL+   ++ +    ++++ IRLA++ + + ++D
Sbjct:  667 QLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNTVIIMTSNIGSNLLLERTEEGEISPELESD-VMQILQSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISD 804          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_LISIN (Chaperone protein clpB OS=Listeria innocua GN=clpB PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.666e-34
Identity = 70/139 (50.36%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGM-MGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR PYS+VL DE+EKAH  VFN LLQVLDDGR+TD QGR +DF+NTVIIMTSN+G+  LL     G+++ ++  D V+Q ++  F+PE LNR+D+I++F PL+   ++ +    ++++ IRLA++ + + ++D
Sbjct:  667 QLTEAVRRNPYSIVLLDEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNTVIIMTSNIGSNLLLERTEEGEISPELESD-VMQILQSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEITITISD 804          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_BACSU (Negative regulator of genetic competence clpC/mecB OS=Bacillus subtilis GN=clpC PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.788e-34
Identity = 74/146 (50.68%), Postives = 100/146 (68.49%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQ-------VARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTE VRR+PYSVVL DE+EKAH  VFN LLQVL+DGRLTD +GRTVDFRNT++IMTSN+GA  L         +Q         +D+V+ E+++ FRPE +NR+DEI+VF  L  + L ++  L    +  RL E+ +++ +TDA
Sbjct:  601 QLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDA 746          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.788e-34
Identity = 73/137 (53.28%), Postives = 100/137 (72.99%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            QLTEAVRRRPY+VVLFDE+EKAH  VF+ LLQVLD+GRLTDG GRTVDFRNT++I+TSNLG+               + +QVL  VR  F+PE +NRLD++++F+ L+ E+L ++  +Q+  +  RLA+R + L V+
Sbjct:  663 QLTEAVRRRPYTVVLFDEIEKAHPDVFDVLLQVLDEGRLTDGHGRTVDFRNTILILTSNLGSGG-------------SAEQVLAAVRATFKPEFINRLDDVLIFEGLNPEELVRIVDIQLAQLGKRLAQRRLQLQVS 786          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_MYCBO (Chaperone protein clpB OS=Mycobacterium bovis GN=clpB PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.788e-34
Identity = 73/137 (53.28%), Postives = 100/137 (72.99%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            QLTEAVRRRPY+VVLFDE+EKAH  VF+ LLQVLD+GRLTDG GRTVDFRNT++I+TSNLG+               + +QVL  VR  F+PE +NRLD++++F+ L+ E+L ++  +Q+  +  RLA+R + L V+
Sbjct:  663 QLTEAVRRRPYTVVLFDEIEKAHPDVFDVLLQVLDEGRLTDGHGRTVDFRNTILILTSNLGSGG-------------SAEQVLAAVRATFKPEFINRLDDVLIFEGLNPEELVRIVDIQLAQLGKRLAQRRLQLQVS 786          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_WOLPM (Chaperone protein clpB OS=Wolbachia pipientis wMel GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.166e-34
Identity = 69/136 (50.74%), Postives = 101/136 (74.26%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAV 409
            +LTEAVRRRPY V+LFDE+EKA+  +FN LLQ+LD+GRLTD  G+ +DFRNT++I+TSNLGAE +L G +  V     R++V+Q V+  FRPE LNRLDEI++F  L+ + + K+  +Q   +   LA+R +++++
Sbjct:  660 RLTEAVRRRPYQVILFDEIEKANPDIFNLLLQILDEGRLTDSHGKLIDFRNTILILTSNLGAEIMLKGNVDSV-----RNEVMQIVKSAFRPEFLNRLDEIIIFHSLTRDDIYKIIDVQFSYLQKTLAKRKLSISL 790          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_OCEIH (Chaperone protein clpB OS=Oceanobacillus iheyensis GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.166e-34
Identity = 75/145 (51.72%), Postives = 99/145 (68.28%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTM-------QVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE VRR+PYSVVL DEVEKAH  VFN LLQVL+DGRLTD +GR VDFRNTVIIMTSN+GA  L         +       +  + +V++E++K FRPE LNR+DE +VF  L  E ++ +  L ++ +  RL E+ + L++TD
Sbjct:  604 QLTEKVRRKPYSVVLLDEVEKAHPEVFNILLQVLEDGRLTDSKGRVVDFRNTVIIMTSNVGASELKRNKYVGFALDNEEKDYKDMKSKVIEELKKAFRPEFLNRIDETIVFHSLEKEHMKDIVTLMVQQLQKRLKEQDLHLSLTD 748          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIN (Chaperone protein clpB OS=Leptospira interrogans GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.166e-34
Identity = 69/138 (50.00%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRRRPYS++LFDE+EKA+  VFN  LQ+LD+GRLTDG+GR VDF+NTVII+TSN+G+E L S    + T +     V Q ++KHF+PE LNR+DE+++F  ++   + K+A +Q++ +  +  E G+ ++ T+
Sbjct:  666 QLTEAVRRRPYSLILFDEIEKANPEVFNIFLQILDEGRLTDGKGRNVDFKNTVIILTSNIGSEVLGS---SEYTSEEKERLVEQRLKKHFKPEFLNRIDEVILFHSITDSVIHKIADIQLEGLRQKAKENGLDVSFTN 800          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIC (Chaperone protein clpB OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpB PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.166e-34
Identity = 69/138 (50.00%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRRRPYS++LFDE+EKA+  VFN  LQ+LD+GRLTDG+GR VDF+NTVII+TSN+G+E L S    + T +     V Q ++KHF+PE LNR+DE+++F  ++   + K+A +Q++ +  +  E G+ ++ T+
Sbjct:  666 QLTEAVRRRPYSLILFDEIEKANPEVFNIFLQILDEGRLTDGKGRNVDFKNTVIILTSNIGSEILGS---SEYTSEEKERLVEQRLKKHFKPEFLNRIDEVILFHSITDSVIHKIADIQLEGLRQKAKENGLDVSFTN 800          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_LISMO3.666e-3450.36Chaperone protein clpB OS=Listeria monocytogenes G... [more]
CLPB_LISMF3.666e-3450.36Chaperone protein clpB OS=Listeria monocytogenes s... [more]
CLPB_LISIN3.666e-3450.36Chaperone protein clpB OS=Listeria innocua GN=clpB... [more]
CLPC_BACSU4.788e-3450.68Negative regulator of genetic competence clpC/mecB... [more]
CLPB_MYCTU4.788e-3453.28Chaperone protein clpB OS=Mycobacterium tuberculos... [more]
CLPB_MYCBO4.788e-3453.28Chaperone protein clpB OS=Mycobacterium bovis GN=c... [more]
CLPB_WOLPM8.166e-3450.74Chaperone protein clpB OS=Wolbachia pipientis wMel... [more]
CLPB_OCEIH8.166e-3451.72Chaperone protein clpB OS=Oceanobacillus iheyensis... [more]
CLPB_LEPIN8.166e-3450.00Chaperone protein clpB OS=Leptospira interrogans G... [more]
CLPB_LEPIC8.166e-3450.00Chaperone protein clpB OS=Leptospira interrogans s... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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