FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_WOLSU (Chaperone protein clpB OS=Wolinella succinogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.067e-33
Identity = 69/139 (49.64%), Postives = 99/139 (71.22%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEA+RR+PYSVVLFDE+EKAH  VFN LLQVLDDGRLTD +G TVDFRNT+II+TSN+ ++ +    M     +     V  E++++F+PE LNRLD+I++F+PL   Q+ ++  +  + +  +L ER + L +T +
Sbjct:  664 QLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGVTVDFRNTIIILTSNIASDKI----MENSDKERRESAVKAELKRYFKPEFLNRLDDIIIFNPLGLAQIVEIVEIMFEGIREKLKERQITLELTQS 798          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_PROMA (Chaperone protein clpB OS=Prochlorococcus marinus GN=clpB PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 1.393e-33
Identity = 64/138 (46.38%), Postives = 101/138 (73.19%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QL+EAVRR PYSV+LFDEVEKA+  V N +LQ+LD+GRLTDG+G+ ++F+NT+II+TSN+G+E ++     K   ++  + V  +++ +F+PE LNRLDE ++F  L  E L+K+ +LQ+  V  RL ++G+ + + +
Sbjct:  668 QLSEAVRRNPYSVILFDEVEKANSDVLNIMLQILDEGRLTDGKGKNINFKNTIIILTSNVGSESIIEMTNKKNEYELIEEVVRNQLKNYFKPEFLNRLDEQIIFKSLKKEDLKKIVKLQIDKVKARLKDKGLEIELNE 805          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 72/149 (48.32%), Postives = 107/149 (71.81%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQ-----------VLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRRRPY+VVLFDE+EKAH  VFN +LQ+L+DGRLTD +GRTVDF+NT++IMTSN+G+  +  G   ++   +  D+           V +E++++FRPE LNRLDE++VF  L+  +++++A + +K+V  RL  + + L VT+
Sbjct:  699 QLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR-RIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFQRLKTKEIELQVTE 846          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_MYCLE (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium leprae GN=clpC PE=3 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 71/145 (48.97%), Postives = 102/145 (70.34%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGM-------MGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE VRR+P+SVVLFDE+EKAH  ++N+LLQVL+DGRLTDGQGRTVDF+NTV+I TSNLG   +   +        G+   +  + +V  E++KHFRPE LNR+D+I+VF  LS +++ ++  L +  V  +L  + + L +T+
Sbjct:  609 QLTEKVRRKPFSVVLFDEIEKAHQEIYNSLLQVLEDGRLTDGQGRTVDFKNTVLIFTSNLGTSDISKPVGLGFTQGSGENDYERMKQKVNDELKKHFRPEFLNRIDDIIVFHQLSRDEIIRMVDLMISRVANQLKVKDMTLELTN 753          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_RICTY (Chaperone protein clpB OS=Rickettsia typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 68/138 (49.28%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            LTE+VRRRPY V+LFDEVEKAH+ +FN +LQ+LD+GRLT+ QG TVDF+NT+I++TSNLGAE L++    + T +V +D+V+Q VR  F+PE LNRLDEI++F  L+   +  + ++Q+  +   L ++ + L   ++
Sbjct:  661 LTESVRRRPYQVILFDEVEKAHLDIFNIMLQILDEGRLTNSQGITVDFKNTIIVLTSNLGAEILVNQQEDEDTYKV-KDEVMQYVRAVFKPEFLNRLDEIILFHRLNRNNIYDIVKIQLGSLKKILLQQNIILEFNES 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPA (Chaperone protein clpB OS=Mycobacterium paratuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 71/137 (51.82%), Postives = 98/137 (71.53%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            QLTEAVRRRPY+V+LFDE+EKAH  VF+ LLQVLD+GRLTDGQGRTVDFRNT++I+TSNLG+               + +QV+  VR  F+PE +NRLD++++F  L   +L ++  +Q+  +  RLA+R + L V+
Sbjct:  663 QLTEAVRRRPYTVILFDEIEKAHPDVFDVLLQVLDEGRLTDGQGRTVDFRNTILILTSNLGSGG-------------SEEQVMAAVRSAFKPEFINRLDDVIIFHGLEPGELVQIVDIQLAQLQKRLAQRRLTLEVS 786          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB1_CHLTE (Probable chaperone protein clpB 1 OS=Chlorobium tepidum GN=clpB1 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 68/144 (47.22%), Postives = 100/144 (69.44%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR+P+SVVL DE+EKAH  VFN LLQ+LDDGRLTD +GRTV+F+NT+IIMTSN+GA+ +      L G      +   ++++ Q +++  RPE LNR+DE+++F PL+ E LR++  +Q   +      + + L ++D
Sbjct:  234 QLTEAVRRKPFSVVLLDEIEKAHPDVFNILLQILDDGRLTDSKGRTVNFKNTIIIMTSNIGAQLIQSEMEHLEGRDADAALAGLKEKLFQLLKQQVRPEFLNRIDEVILFTPLTRENLREIVTIQFNRIKETARRQRITLEISD 377          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.819e-33
Identity = 71/149 (47.65%), Postives = 107/149 (71.81%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQ-----------VLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRRRPY+VVLFDE+EKAH  VFN +LQ+L+DGRLTD +GRTVDF+NT++IMTSN+G+  +  G   ++   +  D+           V +E++++FRPE LNRL E++VF  L+  +++++A + +K+V +RL  + + L VT+
Sbjct:  702 QLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR-RIGFDLDFDEKDSSYNRIKSLVTEELKQYFRPEFLNRLSEMIVFRQLTKLEVKEIADIMLKEVFVRLKNKEIELQVTE 849          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: HSP78_SCHPO (Heat shock protein 78, mitochondrial OS=Schizosaccharomyces pombe GN=hsp78 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.376e-33
Identity = 71/139 (51.08%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            +LTEAVRR+PY+V+LFDE+EKAH  + N LLQVLD+G LTD QGR VDFR+T+I+MTSNLG++ L++     VT + +RD V+  V+K++ PE LNR+D+ +VF+ LS + L  +  +++ +V  RL +R + L VT+A
Sbjct:  595 ELTEAVRRKPYAVLLFDELEKAHHDITNLLLQVLDEGFLTDSQGRKVDFRSTLIVMTSNLGSDILVADPSTTVTPK-SRDAVMDVVQKYYPPEFLNRIDDQIVFNKLSEKNLEDIVNVRLDEVQQRLNDRRIILTVTEA 732          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.376e-33
Identity = 72/149 (48.32%), Postives = 107/149 (71.81%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQ-----------VLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRRRPY+VVLFDE+EKAH  VFN +LQ+L+DGRLTD +GRTVDF+NT++IMTSN+G+  +  G   ++   +  D+           V +E++++FRPE LNRLDE++VF  L+  +++++A + +K+V  RL  + + L VT+
Sbjct:  699 QLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGR-RIGFDLDLDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFERLKVKEIELQVTE 846          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_WOLSU1.067e-3349.64Chaperone protein clpB OS=Wolinella succinogenes G... [more]
CLPB_PROMA1.393e-3346.38Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPC_PEA1.819e-3348.32ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_MYCLE1.819e-3348.97Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_RICTY1.819e-3349.28Chaperone protein clpB OS=Rickettsia typhi GN=clpB... [more]
CLPB_MYCPA1.819e-3351.82Chaperone protein clpB OS=Mycobacterium paratuberc... [more]
CLPB1_CHLTE1.819e-3347.22Probable chaperone protein clpB 1 OS=Chlorobium te... [more]
CLPAA_SOLLC1.819e-3347.65ATP-dependent Clp protease ATP-binding subunit clp... [more]
HSP78_SCHPO2.376e-3351.08Heat shock protein 78, mitochondrial OS=Schizosacc... [more]
CLPAB_SOLLC2.376e-3348.32ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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