FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: HLYB_TREHY (Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.154e-30
Identity = 65/144 (45.14%), Postives = 99/144 (68.75%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSG-MMGKVTMQVARDQ------VLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTE VRR+PYS++LFDE+EKAH  V N LLQVL++G+LTD  GR VDF NT+II+TSNLGA  ++ G  +G   +   +D        L+E++++F PE LNR+D+I+VF  LS E L+ +  + +K++   + ER + + +++
Sbjct:  611 LTEKVRRKPYSLILFDEIEKAHPDVTNILLQVLEEGQLTDNFGRKVDFSNTIIIITSNLGARDIVKGSSLGFNAVGSEKDANDIKNFALEELKQNFNPEFLNRIDDIIVFHTLSKEDLKDIINIMLKELNEAIKERNIVINLSE 754          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: HS104_SCHPO (Heat shock protein 104 OS=Schizosaccharomyces pombe GN=hsp104 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.719e-29
Identity = 70/143 (48.95%), Postives = 93/143 (65.03%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMM---GKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLA--ERGVALAVTD 415
            QLTE +RRRPYSV+LFDE+EKA   V   LLQVLDDGR+T GQG+ VD +N VIIMTSNLGAE+L +      GK+     R+ V+  +R  FRPE LNR+  IV+F+ L    +R +   ++ +V  RL    R + + V+D
Sbjct:  677 QLTEQLRRRPYSVILFDEIEKAAPEVLTVLLQVLDDGRITSGQGQVVDAKNAVIIMTSNLGAEYLTTDNESDDGKID-STTREMVMNSIRGFFRPEFLNRISSIVIFNRLRRVDIRNIVENRILEVQKRLQSNHRSIKIEVSD 818          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPL_LACLA (ATP-dependent Clp protease ATP-binding subunit clpL OS=Lactococcus lactis subsp. lactis GN=clpL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.719e-29
Identity = 71/139 (51.08%), Postives = 89/139 (64.03%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG-AEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            LTE VRR PYSV+L DE+EKA   V   LLQV+DDGRLTDGQG  +DFRNT+IIMTSN G     LSG   K  +Q   D++     ++FRPE  NRLD IV F  L+ + L ++  L + DV   LA++ + L VT A
Sbjct:  569 LTERVRRNPYSVILLDEIEKADPQVLTLLLQVMDDGRLTDGQGSVIDFRNTIIIMTSNAGFGNEALSG--DKQRVQSLMDKLAPFFAQNFRPEFRNRLDNIVEFSHLTKQDLSQIVDLMLADVQKTLAKKSIKLEVTKA 705          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: HS104_YEAST (Heat shock protein 104 OS=Saccharomyces cerevisiae GN=HSP104 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.551e-29
Identity = 59/128 (46.09%), Postives = 89/128 (69.53%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAE 388
            LT  ++ +PYSV+LFDEVEKAH  V   +LQ+LDDGR+T GQG+T+D  N ++IMTSNLGAE  ++   G    +  ++ V+  VR+HFRPE LNR+  IV+F+ LS + + K+  +++K++  R  +
Sbjct:  671 LTNQLQYKPYSVLLFDEVEKAHPDVLTVMLQMLDDGRITSGQGKTIDCSNCIVIMTSNLGAE-FINSQQGSKIQESTKNLVMGAVRQHFRPEFLNRISSIVIFNKLSRKAIHKIVDIRLKEIEERFEQ 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_MYCGA (Chaperone protein clpB OS=Mycoplasma gallisepticum GN=clpB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.551e-29
Identity = 60/131 (45.80%), Postives = 92/131 (70.23%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGV 397
            L++A+R +PY+VVLFDE+EKAH  V N LLQ+LDDG+LTD   R V+F+NT+IIMTSN+GAEH+L+    K          ++E+++  RPELLNR+DE++ F  L+ + L  +A+  + D+  R+ ++ +
Sbjct:  522 LSDAIRTKPYAVVLFDEIEKAHPDVLNILLQILDDGQLTDNHNRLVNFKNTIIIMTSNIGAEHILANNPAK---------TIEELKRKIRPELLNRIDELITFKALNDKDLSAIAQKLLSDLSDRIKKQQI 643          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPE_BACSU (ATP-dependent Clp protease ATP-binding subunit clpE OS=Bacillus subtilis GN=clpE PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.637e-29
Identity = 69/139 (49.64%), Postives = 90/139 (64.75%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVL-QEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE VRR PYS+VL DE+EKAH  V +  LQ+++DGRLTD QGRTV F++TVIIMTSN GA    + +  +    V  +Q L   +   F+PE LNR D I+ F  L  E L K+  L + ++   LAERG++L VTD
Sbjct:  502 QLTEKVRRNPYSIVLLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSNAGAGEKQTKVGFQSDDSVIEEQTLIDSLSMFFKPEFLNRFDSIIEFRSLEKEHLVKIVSLLLGELEETLAERGISLNVTD 640          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_HELPJ (Chaperone protein clpB OS=Helicobacter pylori J99 GN=clpB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.637e-29
Identity = 65/138 (47.10%), Postives = 93/138 (67.39%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR+PYSVVL DEVEKAH  VFN LLQVLD+G LTD +G  VDF+NT++I+TSN+ +  LL   + +   Q A   + + +R+ F+PE LNRLDEI+ F+ L    +  +  +  ++V  +  ERG+ + + +
Sbjct:  661 QLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNVASGALLEEDLSEADKQKA---IKESLRQFFKPEFLNRLDEIISFNALDSHAIINIVGILFENVQKKALERGINITLDE 795          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_HELPY (Chaperone protein clpB OS=Helicobacter pylori GN=clpB PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.056e-29
Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR+PYSVVL DEVEKAH  VFN LLQVLD+G LTD +G  VDF+NT++I+TSN+ +  LL   + +   Q A   + + +R+ F+PE LNRLDEI+ F+ L    +  +  +  +++  +  ERG+ + + +
Sbjct:  661 QLTEAVRRKPYSVVLLDEVEKAHPDVFNLLLQVLDEGHLTDSKGVRVDFKNTILILTSNVASGALLEENLSEAEKQKA---IKESLRQFFKPEFLNRLDEIISFNALDSHAVINIVGILFENIQKKALERGINITLDE 795          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPE_STRPN (ATP-dependent Clp protease ATP-binding subunit clpE OS=Streptococcus pneumoniae GN=clpE PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 1.033e-28
Identity = 66/138 (47.83%), Postives = 85/138 (61.59%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE VR  PYS++L DEVEKAH  V +  LQVLDDGRLTDGQGRTV F++ +IIMTSN G     + +      +   + VL E+   F PE +NR D I+ F  LS + L ++  L + DV  RL+   + L VTD
Sbjct:  543 QLTEKVRHNPYSLILLDEVEKAHPDVMHMFLQVLDDGRLTDGQGRTVSFKDAIIIMTSNAGTGKTEASVGFGAAREGRTNSVLGELGNFFSPEFMNRFDGIIEFKALSKDNLLQIVELMLADVNKRLSSNNIRLDVTD 680          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CHLMU (Chaperone protein clpB OS=Chlamydia muridarum GN=clpB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.926e-28
Identity = 68/142 (47.89%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEV----RKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            L+EA+RRRPYSVVLFDE+EKA   VFN LLQ+ DDG LTD + R V+ +N + IMTSN+G++ L      K T+ V ++ VL  V    + +F PE +NR+DEI+ F PL+ E + K+  +QM  V +RL ER ++L   D+
Sbjct:  662 LSEALRRRPYSVVLFDEIEKADKEVFNILLQIFDDGILTDSKKRKVNCKNALFIMTSNIGSQELADYCAKKGTI-VDKEAVLSVVAPALKNYFSPEFINRIDEILPFVPLTTEDIVKIVGIQMNRVALRLLERRISLTWDDS 802          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
HLYB_TREHY7.154e-3045.14Hemolysin B OS=Treponema hyodysenteriae GN=tlyB PE... [more]
HS104_SCHPO2.719e-2948.95Heat shock protein 104 OS=Schizosaccharomyces pomb... [more]
CLPL_LACLA2.719e-2951.08ATP-dependent Clp protease ATP-binding subunit clp... [more]
HS104_YEAST3.551e-2946.09Heat shock protein 104 OS=Saccharomyces cerevisiae... [more]
CLPB_MYCGA3.551e-2945.80Chaperone protein clpB OS=Mycoplasma gallisepticum... [more]
CLPE_BACSU4.637e-2949.64ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_HELPJ4.637e-2947.10Chaperone protein clpB OS=Helicobacter pylori J99 ... [more]
CLPB_HELPY6.056e-2946.38Chaperone protein clpB OS=Helicobacter pylori GN=c... [more]
CLPE_STRPN1.033e-2847.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_CHLMU3.926e-2847.89Chaperone protein clpB OS=Chlamydia muridarum GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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