FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_STRP6 (Probable ATP-dependent Clp protease ATP-binding subunit OS=Streptococcus pyogenes serotype M6 GN=clpC PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 5.127e-28
Identity = 60/137 (43.80%), Postives = 86/137 (62.77%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTE VRR PY++VL DE+EKA   +   LLQVLDDGRLTDGQG T++F+NTVII TSN G         G+   + +   ++  +  +FRPE LNR + I+ F+ L  E L ++  L + +V    A++G++L + D
Sbjct:  510 LTERVRRNPYAIVLLDEIEKADPQIITLLLQVLDDGRLTDGQGNTINFKNTVIIATSNAG--------FGQQDTETSESNIMDRIAPYFRPEFLNRFNSIIKFNHLQKENLEEIVDLMLAEVNQTTAKKGISLTIAD 638          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPN (Chaperone protein clpB OS=Mycoplasma pneumoniae GN=clpB PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 6.696e-28
Identity = 64/131 (48.85%), Postives = 88/131 (67.18%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGV 397
            LTEAVRR+PY V+LFDE+EKAH  V N LLQVLDDG L D QGR V+F+NT+IIMTSNLG+ ++         M+  RD  ++ ++KHFR E +NR+DEIV F  L    + ++    +  +  RLA++ +
Sbjct:  523 LTEAVRRKPYCVLLFDEIEKAHPDVTNILLQVLDDGTLKDSQGRLVNFKNTMIIMTSNLGSNYI---------MENKRDLAMEALKKHFRAEFINRIDEIVFFSVLQKTTVLEIITNLLDQLNQRLAKQNL 644          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CHLTR (Chaperone protein clpB OS=Chlamydia trachomatis GN=clpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.745e-28
Identity = 67/142 (47.18%), Postives = 95/142 (66.90%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEV----RKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            L+EA+RRRPYSVVLFDE+EKA   VFN LLQ+ DDG LTD + R V+ +N + IMTSN+G++ L      K T+ V ++ VL  V    + +F PE +NR+D+I+ F PL+ E + K+  +QM  V +RL ER ++L   D+
Sbjct:  662 LSEALRRRPYSVVLFDEIEKADKEVFNILLQIFDDGILTDSKKRKVNCKNALFIMTSNIGSQELADYCTKKGTI-VDKEAVLSVVAPALKNYFSPEFINRIDDILPFVPLTTEDIVKIVGIQMNRVALRLLERKISLTWDDS 802          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CHLCV (Chaperone protein clpB OS=Chlamydophila caviae GN=clpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.745e-28
Identity = 67/142 (47.18%), Postives = 96/142 (67.61%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEV----RKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            L+EA+RRRPYSVVLFDE+EKA   VFN LLQ+ D+G LTD + R V+ +N + IMTSN+G++  L+    K   +V+++ VL  V    +K+F PE +NR+D+I+ F PL+ E + K+  +QM+ V  RL ER V L   D+
Sbjct:  662 LSEALRRRPYSVVLFDEIEKADKEVFNILLQIFDEGILTDSKKRKVNCKNALFIMTSNIGSQE-LADYCAKKGSRVSKETVLSVVAPTLKKYFSPEFINRIDDILPFVPLNTEDIVKIVGIQMRRVAQRLLERRVTLTWDDS 802          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPL_STAAB (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpL PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.492e-27
Identity = 64/136 (47.06%), Postives = 88/136 (64.71%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTE VRR PYSV+LFDE+EKA+  +   LLQV+DDG LTDGQG  ++F+NT+II TSN G         G  T Q   D ++QE++K FRPE LNR + IV F  L  + L+ +  L + DV + L ++G+ + V+
Sbjct:  515 LTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG--------FGNGTDQ-EYDDIMQEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMNVS 641          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPE (Chaperone protein clpB OS=Mycoplasma penetrans GN=clpB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.544e-27
Identity = 59/129 (45.74%), Postives = 89/129 (68.99%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAE 388
            +L+E +RR+PYSVVL DE+EKAH  + N LLQVLD+G L D QGR ++F+NT+IIMTSN+GA +L         M+   D   +E++  F+PE LNR+DEI+ F+ ++ E  +++A+  + D+  RL +
Sbjct:  515 ELSEQIRRKPYSVVLLDEIEKAHPDILNVLLQVLDEGTLKDNQGRNINFKNTIIIMTSNVGALYL---------MENKEDMFERELKTSFKPEFLNRIDEIIKFNSITMEFAKEIAQKMLDDLEKRLKD 634          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPE_LACLM (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpE PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTE VRR PYS++L DE+EKAH  V +  LQ+L+DGRLTD QGRTV F++++IIMTSN G   + + +      +     VL ++   F PE +NR D I+ F  LS E L K+  L + +V  ++    + L+VT A
Sbjct:  537 QLTERVRRNPYSLILLDEIEKAHPDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTGKVEASVGFGAAREGRTKSVLGQLGDFFSPEFMNRFDGIIEFSALSKENLLKIVDLMLDEVNEQIGRNDIHLSVTQA 675          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPE_LACLA (ATP-dependent Clp protease ATP-binding subunit clpE OS=Lactococcus lactis subsp. lactis GN=clpE PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.263e-26
Identity = 61/139 (43.88%), Postives = 86/139 (61.87%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTE VRR PYS++L DE+EKAH  V +  LQ+L+DGRLTD QGRTV F++++IIMTSN G   + + +      +     VL ++   F PE +NR D I+ F  LS E L K+  L + +V  ++    + L+VT A
Sbjct:  537 QLTERVRRNPYSLILLDEIEKAHPDVMHMFLQILEDGRLTDAQGRTVSFKDSLIIMTSNAGTGKVEASVGFGAAREGRTKSVLGQLGDFFSPEFMNRFDGIIEFSALSKENLLKIVDLMLDEVNEQIGRNDIHLSVTQA 675          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPL_STAAW (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MW2) GN=clpL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTE VRR PYSV+LFDE+EKA+  +   LLQV+DDG LTDGQG  ++F+NT+II TSN G         G       +D ++ E++K FRPE LNR + IV F  L  + L+ +  L + DV + L ++G+ + V+
Sbjct:  515 LTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG--------FGNGNDAEEKD-IMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVS 641          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPL_STAAS (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MSSA476) GN=clpL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTE VRR PYSV+LFDE+EKA+  +   LLQV+DDG LTDGQG  ++F+NT+II TSN G         G       +D ++ E++K FRPE LNR + IV F  L  + L+ +  L + DV + L ++G+ + V+
Sbjct:  515 LTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG--------FGNGNDAEEKD-IMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVS 641          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPC_STRP65.127e-2843.80Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPB_MYCPN6.696e-2848.85Chaperone protein clpB OS=Mycoplasma pneumoniae GN... [more]
CLPB_CHLTR8.745e-2847.18Chaperone protein clpB OS=Chlamydia trachomatis GN... [more]
CLPB_CHLCV8.745e-2847.18Chaperone protein clpB OS=Chlamydophila caviae GN=... [more]
CLPL_STAAB1.492e-2747.06ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_MYCPE2.544e-2745.74Chaperone protein clpB OS=Mycoplasma penetrans GN=... [more]
CLPE_LACLM1.263e-2643.88ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPE_LACLA1.263e-2643.88ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAW6.267e-2644.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAS6.267e-2644.85ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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