FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPL_STAAR (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MRSA252) GN=clpL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 61/136 (44.85%), Postives = 87/136 (63.97%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTE VRR PYSV+LFDE+EKA+  +   LLQV+DDG LTDGQG  ++F+NT+II TSN G  +      G  T +     ++ E++K FRPE LNR + IV F  L  + L+ +  L + DV + L ++G+ + V+
Sbjct:  515 LTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAGFGN------GNDTEE---KDIMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVS 641          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPL_STAAN (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain N315) GN=clpL PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTE VRR PYSV+LFDE+EKA+  +   LLQV+DDG LTDGQG  ++F+NT+II TSN G         G       +D ++ E++K FRPE LNR + IV F  L  + L+ +  L + DV + L ++G+ + V+
Sbjct:  515 LTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG--------FGNGNDAEEKD-IMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVS 641          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPL_STAAM (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpL PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTE VRR PYSV+LFDE+EKA+  +   LLQV+DDG LTDGQG  ++F+NT+II TSN G         G       +D ++ E++K FRPE LNR + IV F  L  + L+ +  L + DV + L ++G+ + V+
Sbjct:  515 LTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG--------FGNGNDAEEKD-IMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVS 641          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPL_STAAC (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain COL) GN=clpL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTE VRR PYSV+LFDE+EKA+  +   LLQV+DDG LTDGQG  ++F+NT+II TSN G         G       +D ++ E++K FRPE LNR + IV F  L  + L+ +  L + DV + L ++G+ + V+
Sbjct:  515 LTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG--------FGNGNDAEEKD-IMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVS 641          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPL_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain NCTC 8325) GN=clpL PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTE VRR PYSV+LFDE+EKA+  +   LLQV+DDG LTDGQG  ++F+NT+II TSN G         G       +D ++ E++K FRPE LNR + IV F  L  + L+ +  L + DV + L ++G+ + V+
Sbjct:  515 LTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG--------FGNGNDAEEKD-IMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVS 641          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPL_STAA3 (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain USA300) GN=clpL PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 61/136 (44.85%), Postives = 86/136 (63.24%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTE VRR PYSV+LFDE+EKA+  +   LLQV+DDG LTDGQG  ++F+NT+II TSN G         G       +D ++ E++K FRPE LNR + IV F  L  + L+ +  L + DV + L ++G+ + V+
Sbjct:  515 LTEKVRRNPYSVILFDEIEKANPQILTLLLQVMDDGNLTDGQGNVINFKNTIIICTSNAG--------FGNGNDAEEKD-IMHEMKKFFRPEFLNRFNGIVEFLHLDKDALQDIVNLLLDDVQVTLDKKGITMDVS 641          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CHLPN (Chaperone protein clpB OS=Chlamydia pneumoniae GN=clpB PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.267e-26
Identity = 63/141 (44.68%), Postives = 91/141 (64.54%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL---LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            L+EA+RRRPYSVVLFDE+EKA   V N LLQV DDG LTDG+ R V+ +N + IMTSN+G+  L    S    ++T +     V   ++++  PE +NR+DEI+ F PL+ E + K+  +QM+ +  RL  R + L+  D+
Sbjct:  662 LSEALRRRPYSVVLFDEIEKADKEVLNILLQVFDDGILTDGKKRKVNCKNALFIMTSNIGSPELADYCSKKGSELTKEAILSVVSPVLKRYLSPEFMNRIDEILPFVPLTKEDIVKIVGIQMRRIAQRLKARRINLSWDDS 802          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPA_ECOLI (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli (strain K12) GN=clpA PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.396e-25
Identity = 58/136 (42.65%), Postives = 89/136 (65.44%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LT+AV + P++V+L DE+EKAH  VFN LLQV+D+G LTD  GR  DFRN V++MT+N G        +G +    + D  ++E++K F PE  NRLD I+ FD LS + + +V    + ++ ++L ++GV+L V+
Sbjct:  549 LTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTD-AMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVS 683          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPA_ECOL6 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O6 GN=clpA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.396e-25
Identity = 58/136 (42.65%), Postives = 89/136 (65.44%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LT+AV + P++V+L DE+EKAH  VFN LLQV+D+G LTD  GR  DFRN V++MT+N G        +G +    + D  ++E++K F PE  NRLD I+ FD LS + + +V    + ++ ++L ++GV+L V+
Sbjct:  549 LTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTD-AMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVS 683          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPA_ECO57 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O157:H7 GN=clpA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.396e-25
Identity = 58/136 (42.65%), Postives = 89/136 (65.44%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LT+AV + P++V+L DE+EKAH  VFN LLQV+D+G LTD  GR  DFRN V++MT+N G        +G +    + D  ++E++K F PE  NRLD I+ FD LS + + +V    + ++ ++L ++GV+L V+
Sbjct:  549 LTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTD-AMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVS 683          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPL_STAAR6.267e-2644.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAN6.267e-2644.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAM6.267e-2644.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAC6.267e-2644.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAA86.267e-2644.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAA36.267e-2644.85ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_CHLPN6.267e-2644.68Chaperone protein clpB OS=Chlamydia pneumoniae GN=... [more]
CLPA_ECOLI1.396e-2542.65ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECOL61.396e-2542.65ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECO571.396e-2542.65ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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