FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_PROFR (Chaperone protein clpB (Fragment) OS=Propionibacterium freudenreichii subsp. shermanii GN=clpB PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.866e-24
Identity = 52/66 (78.79%), Postives = 59/66 (89.39%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLL 199
            QLTEAVRRRPYSVVL DE+EK H  VFN LLQVLDDGRLTDGQGRTVDFRN ++IMTSNLG++ ++
Sbjct:  664 QLTEAVRRRPYSVVLLDEIEKVHPDVFNFLLQVLDDGRLTDGQGRTVDFRNVILIMTSNLGSQFMV 729          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPA_RHOBL (ClpA homolog protein OS=Rhodopseudomonas blastica PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.219e-22
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQE----VRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LT+ V + P+ V+L DE+EKAH  V+N LLQV+D G+LTD  GR VDFRN ++IMTSN+GA       M K  +   R++   E    V + F PE  NRLD ++ F PL  E + +V    +  +  +L +R V + +T
Sbjct:  579 LTDGVDQHPHCVLLLDEIEKAHPDVYNILLQVMDHGKLTDHNGRAVDFRNVILIMTSNVGAAD-----MAKEAIGFGRERRTGEDTAAVERTFTPEFRNRLDAVISFAPLGREIILQVVEKFVLQLEAQLIDRNVHIELT 713          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPV1_PSEAE (Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.352e-20
Identity = 55/130 (42.31%), Postives = 81/130 (62.31%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVR----KHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRL 382
            LTEAVRR+PYSVVL DEVEKAH  V     QV D G + DG+GR +DF+NT+I++T+N G E +++ +     +    + + + +R    K F P LL RL  I  + PLS + L+ ++RLQ+  +  R+
Sbjct:  697 LTEAVRRKPYSVVLLDEVEKAHPDVHEIFFQVFDKGVMEDGEGRVIDFKNTLILLTTNAGTE-MIASLCADPELMPEPEAIAKSLREPLLKIFPPALLGRLVTIPYY-PLSDDMLKAISRLQLGRIKKRV 824          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_YEREN (Chaperone protein clpB OS=Yersinia enterocolitica GN=clpB PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.013e-20
Identity = 54/130 (41.54%), Postives = 79/130 (60.77%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQ----EVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRL 382
            LTEAVRR+PYSVVL DE+EKAH  V     QV D G++ DG+GR +DF+NT++++TSN+G+E LLS +         +D +L     E+ K F    L R+  ++ + PL    L+ + RL +  +  RL
Sbjct:  683 LTEAVRRKPYSVVLLDEIEKAHSDVHELFFQVFDKGQMEDGEGRFIDFKNTILLLTSNVGSE-LLSNLFADPDTAPDQDGILSALQPELLKVFPAAFLGRV-TVIPYLPLQQSALQHIVRLHLDRIGQRL 810          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_MOUSE (Caseinolytic peptidase B protein homolog OS=Mus musculus GN=Clpb PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.185e-16
Identity = 53/147 (36.05%), Postives = 85/147 (57.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG----AEHLLS--------------------GMMGKVTM-QVARDQVLQEVRK-HF-RPELLNRLDEIVVFDPLSHEQLRKVARLQM 361
            QLT+ +++ P +VVLFDEV+KAH  V   +LQ+ D+GRLTDG+G+T+D ++ + IMTSN+     A+H L                      M  K+T+ +  ++ V++ + K HF R E L R++EIV F P  H +L ++   ++
Sbjct:  408 QLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHALQLRQEALEMSRNRIAENLGDVQMSDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKEL 554          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: ADPR_RHOER (ATP-dependent protease ATP-binding subunit-like protein OS=Rhodococcus erythropolis PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 55/144 (38.19%), Postives = 83/144 (57.64%), Query Frame = 2
Query:   29 PYS--VVLFDEVEKAHISVFNTLLQVLDDG--RLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQ---VLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            PY+  +VLFDEVEKA  +V   LLQVLD+G  RL +GQ + + FRN+ + +TSNLG+  +       L  +  +V +   R     V + + K F PE  NR+DE V+ D    +   +V RL+++ +  RLA RG+ + V D+
Sbjct:  146 PYTPGIVLFDEVEKADPTVLRALLQVLDNGELRLANGQQK-ISFRNSYVFLTSNLGSAAVAERRRSHLRQLADRVRIDRPRHGHHLVQRALEKFFDPEFFNRIDETVILDEFDDQTAEQVTRLEIELITTRLARRGIDVEVDDS 288          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_RAT (Caseinolytic peptidase B protein homolog OS=Rattus norvegicus GN=Clpb PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 49/149 (32.89%), Postives = 85/149 (57.05%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG----AEHLLSGMMGKVTMQVARDQVLQE------------------------VRKHF-RPELLNRLDEIVVFDPLSHEQLRKVARLQM 361
            QLT+ +++ P +VVLFDEV+KAH  V   +LQ+ D+GRLTDG+G+T+D ++ + IMTSN+     A+H L   + +  ++++R+++ +                         ++ HF R E L R++EIV F P  H +L ++   ++
Sbjct:  408 QLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHAL--QLRQEALEMSRNRIAENLGDVQISDKITISKNFKENMIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKEL 554          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_HUMAN (Caseinolytic peptidase B protein homolog OS=Homo sapiens GN=CLPB PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 49/149 (32.89%), Postives = 85/149 (57.05%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG----AEHLLSGMMGKVTMQVARDQVLQE------------------------VRKHF-RPELLNRLDEIVVFDPLSHEQLRKVARLQM 361
            QLT+ +++ P +VVLFDEV+KAH  V   +LQ+ D+GRLTDG+G+T+D ++ + IMTSN+     A+H L   + +  ++++R+++ +                         ++ HF R E L R++EIV F P  H +L ++   ++
Sbjct:  438 QLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHAL--QLRQEALEMSRNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKEL 584          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_BOVIN (Caseinolytic peptidase B protein homolog OS=Bos taurus GN=CLPB PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.021e-16
Identity = 49/149 (32.89%), Postives = 85/149 (57.05%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG----AEHLLSGMMGKVTMQVARDQVLQE------------------------VRKHF-RPELLNRLDEIVVFDPLSHEQLRKVARLQM 361
            QLT+ +++ P +VVLFDEV+KAH  V   +LQ+ D+GRLTDG+G+T+D ++ + IMTSN+     A+H L   + +  ++++R+++ +                         ++ HF R E L R++EIV F P  H +L ++   ++
Sbjct:  408 QLTKKLKQCPNAVVLFDEVDKAHPDVLTIMLQLFDEGRLTDGKGKTIDCKDAIFIMTSNVASDEIAQHAL--QLRQEALEMSRNRIAENLGDVQISDKITISKNFKENVIRPILKAHFRRDEFLGRINEIVYFLPFCHSELIQLVNKEL 554          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: AMIB_PSEAE (ATP-dependent protease ATP-binding subunit-like protein amiB OS=Pseudomonas aeruginosa GN=amiB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.727e-12
Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 2
Query:   38 VVLFDEVEKAHISVFNTLLQVLDDGRLTDGQG-RTVDFRNTVIIMTSNLGAEHL-------------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            +VLFDE+EKA   V + LL VLD+G L    G RT  FRNT++ MTSNL A  +             L  + G+   +     V   + K F PE +NRLD +V F+ +  + + ++  L+++ +  RL +    L  T
Sbjct:  168 IVLFDELEKASPEVVHALLNVLDNGLLRVASGERTYHFRNTLVFMTSNLCAHEIQRYDERRQRLPWRLLPVGGERRRRDIDGMVRARLLKTFSPEFVNRLDSVVTFNWIERDVVARLVELEVQRLNRRLEKHRCRLEAT 306          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_PROFR5.866e-2478.79Chaperone protein clpB (Fragment) OS=Propionibacte... [more]
CLPA_RHOBL3.219e-2241.43ClpA homolog protein OS=Rhodopseudomonas blastica ... [more]
CLPV1_PSEAE1.352e-2042.31Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 P... [more]
CLPB_YEREN3.013e-2041.54Chaperone protein clpB OS=Yersinia enterocolitica ... [more]
CLPB_MOUSE1.185e-1636.05Caseinolytic peptidase B protein homolog OS=Mus mu... [more]
ADPR_RHOER1.547e-1638.19ATP-dependent protease ATP-binding subunit-like pr... [more]
CLPB_RAT2.021e-1632.89Caseinolytic peptidase B protein homolog OS=Rattus... [more]
CLPB_HUMAN2.021e-1632.89Caseinolytic peptidase B protein homolog OS=Homo s... [more]
CLPB_BOVIN2.021e-1632.89Caseinolytic peptidase B protein homolog OS=Bos ta... [more]
AMIB_PSEAE6.727e-1233.81ATP-dependent protease ATP-binding subunit-like pr... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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