FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+    G++     ++ VL  V ++FRPE +NR+DE+VVF PL  + +  +A++Q++ +  RL ERG  + ++D
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQERFGELDYGRMKEMVLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISD 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 80/137 (58.39%), Postives = 105/137 (76.64%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+    G++     ++ VL  V ++FRPE +NR+DE+VVF PL  + +  +A++Q++ +  RL ERG  + ++D
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQERFGELDYGRMKEMVLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISD 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.219e-39
Identity = 78/140 (55.71%), Postives = 110/140 (78.57%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTM-QVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRR+PYSV+L DE+EKAH  VFN LLQ+LDDGR+TD QGRTVDF+NTVIIMTSN+G+ HLL G+    ++ + +R+ V+ ++R HFRPE LNR+DEI++F PL+  +++ +    +K++  RLA+R + + +TDA
Sbjct:  667 QLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLDGLEDDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVELTDA 806          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_YERPE (Chaperone protein clpB OS=Yersinia pestis GN=clpB PE=3 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 2.898e-39
Identity = 81/136 (59.56%), Postives = 100/136 (73.53%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+    G++     +  V+  V  HFRPE +NR+DE+VVF PL    L  +A +Q++ +  RL ERG  + +T
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQEHFGQMNYSEMKTVVMDVVSHHFRPEFINRIDEVVVFHPLGRAHLASIANIQLERLYKRLEERGYEVKIT 796          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_STRAL (Chaperone protein clpB OS=Streptomyces albus G GN=clpB PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.785e-39
Identity = 81/137 (59.12%), Postives = 106/137 (77.37%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            QLTEAVRRRPYSVVL DEVEKAH  VF+ LLQVLDDGRLTDGQGRTVDFRNT++++TSNLG+++L    +G    +  R QV++ VR  F+PE LNRLD++V+F  L  ++L ++A LQ+  +  RLA+R ++L VT
Sbjct:  661 QLTEAVRRRPYSVVLLDEVEKAHPGVFDILLQVLDDGRLTDGQGRTVDFRNTILVLTSNLGSQYL----VGSAPEEEKRRQVMEVVRSSFKPEFLNRLDDLVIFSALDEDELARIAGLQIAGLARRLADRRLSLDVT 793          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.785e-39
Identity = 82/137 (59.85%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRR+PYSVVL DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDF+NTVI+MTSNLG++  L   M   +  V +  V QEV+ HFRPE LNR+DE+VVF  L    +  +AR+Q++ +  RLA   + L ++D
Sbjct:  665 LTEAVRRKPYSVVLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIVMTSNLGSQ--LIQQMASESPDVIKGAVWQEVKTHFRPEFLNRIDEVVVFHALDQGHIESIARIQLQRLAARLAHMDLTLEISD 799          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 3.785e-39
Identity = 79/138 (57.25%), Postives = 103/138 (74.64%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRRRPY+V+LFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNT+IIMTSN+G+  +L         +  +  V+ E+R  FRPE LNR+D+I+VFD L+ + L+ +  +Q+  +  RLAER + L +T+
Sbjct:  651 QLTEAVRRRPYAVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNIGSPLILEMQQRGEDAETIKSAVMDELRGEFRPEFLNRVDDIIVFDALTAKDLQSIVDIQLGGLRRRLAERRITLHLTE 788          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_TREDE (Chaperone protein clpB OS=Treponema denticola GN=clpB PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 4.943e-39
Identity = 79/139 (56.83%), Postives = 106/139 (76.26%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGM-MGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRRRPYSV+LFDE+EKAH  VFN  LQ+LDDGRLTDGQGR VDF+NT+IIMTSN+G+E++L+   MG +     ++++ Q +R +FRPE LNR+DEI+ F+ L  E +RK+  +Q++ V  RL  R + L V+D
Sbjct:  665 QLTEAVRRRPYSVILFDEIEKAHQDVFNVFLQILDDGRLTDGQGRVVDFKNTIIIMTSNIGSEYILTAKDMGSI-----KEEINQILRDNFRPEFLNRIDEILTFNRLEKEHIRKIVDIQLRSVAERLQARRLGLKVSD 798          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.456e-39
Identity = 83/138 (60.14%), Postives = 103/138 (74.64%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ L+ G   +   ++ +  V+  V +HFRPE +NR+DE VVF PL  E +R +A +Q++ +  R+  RG  L  TDA
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHADVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-LIQGNKDESYSEM-KALVMSVVSQHFRPEFINRIDETVVFHPLGKENIRAIASIQLERLAKRMETRGYELVFTDA 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.456e-39
Identity = 82/139 (58.99%), Postives = 102/139 (73.38%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPY+ VLFDEVEKAH  VF+ LLQVLDDGRLTDGQGRTVDFRNT++I+TSNLGA                R+Q++  V+  F+PE +NRLD+IVVFDPLS EQL  +  +Q+  +  RL++R + L V+DA
Sbjct:  664 QLTEAVRRRPYTTVLFDEVEKAHPDVFDILLQVLDDGRLTDGQGRTVDFRNTILILTSNLGAGG-------------TREQMMDAVKMAFKPEFINRLDDIVVFDPLSQEQLASIVEIQISQLAERLSDRRLTLRVSDA 789          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_SALTY2.219e-3958.39Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI2.219e-3958.39Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB_BACC12.219e-3955.71Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_YERPE2.898e-3959.56Chaperone protein clpB OS=Yersinia pestis GN=clpB ... [more]
CLPB_STRAL3.785e-3959.12Chaperone protein clpB OS=Streptomyces albus G GN=... [more]
CLPB_RALSO3.785e-3959.85Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
CLPB_DEIRA3.785e-3957.25Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_TREDE4.943e-3956.83Chaperone protein clpB OS=Treponema denticola GN=c... [more]
CLPB_HAEIN6.456e-3960.14Chaperone protein clpB OS=Haemophilus influenzae G... [more]
CLPB_COREF6.456e-3958.99Chaperone protein clpB OS=Corynebacterium efficien... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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