FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CORDI (Chaperone protein clpB OS=Corynebacterium diphtheriae GN=clpB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.431e-39
Identity = 81/139 (58.27%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPY+VVLFDEVEKAH  VF+ LLQVLD+GRLTDGQGRTVDFRNTV+I+TSNLGA                +D+++  V++ F+PE +NRLD++V+FDPLS EQL  +  +Q+  +  RLA R + LAV+D+
Sbjct:  662 QLTEAVRRRPYTVVLFDEVEKAHPDVFDILLQVLDEGRLTDGQGRTVDFRNTVLILTSNLGAGG-------------TKDEMMDAVKRAFKPEFVNRLDDVVIFDPLSQEQLTHIVEIQIAQLAQRLAARRLTLAVSDS 787          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_BACAN (Chaperone protein clpB OS=Bacillus anthracis GN=clpB PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.431e-39
Identity = 77/140 (55.00%), Postives = 110/140 (78.57%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTM-QVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRR+PYSV+L DE+EKAH  VFN LLQ+LDDGR+TD QGRTVDF+NTVIIMTSN+G+ HLL G+    ++ + +R+ V+ ++R HFRPE LNR+DEI++F PL+  +++ +    +K++  RLA+R + + +T+A
Sbjct:  667 QLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVIIMTSNIGSAHLLDGLEEDGSIKEESRELVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLADRHITVKLTEA 806          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFA (Chaperone protein clpB OS=Xylella fastidiosa GN=clpB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.101e-38
Identity = 82/139 (58.99%), Postives = 103/139 (74.10%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL--LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTE VRRRPYS++L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG+  +  LSG          +  V++ V+ HFRPE +NRLD+IVVF PL   Q++++AR+Q++ +  RLAE  + L + D
Sbjct:  662 LTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELSGDDSPEVYTQMKAAVMEVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLQGLEKRLAESELKLDLDD 800          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_SHEON (Chaperone protein clpB OS=Shewanella oneidensis GN=clpB PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.101e-38
Identity = 82/137 (59.85%), Postives = 100/137 (72.99%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG++ +  G  G ++    +  V+  V   FRPE LNR+DE VVF PL  E ++ +A +Q+  +  RLAE+   L +TD
Sbjct:  662 LTEAVRRKPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDIIQEG-FGHLSYSEMKSAVMNVVTHSFRPEFLNRIDESVVFHPLDAENIKHIASIQIASLRKRLAEKDYTLEITD 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_PHOPR (Chaperone protein clpB OS=Photobacterium profundum GN=clpB PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 80/138 (57.97%), Postives = 103/138 (74.64%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG++ +     G +  +  ++ VL+ V ++FRPE +NR+DE VVF PL  E ++ +A +Q++ +  RL E+   L V ++
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSDRIQEN-FGNLNYEGIKNMVLEVVSQYFRPEFINRVDETVVFHPLGQENIKHIASIQIERLVNRLKEKDYELTVQES 798          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_BRAJA (Chaperone protein clpB OS=Bradyrhizobium japonicum GN=clpB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 82/138 (59.42%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            LTEAVRRRPY VVLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNT+IIMTSNLG+E L++   G+ T  V R+QV+  VR HFRPE LNR+DEI++F  L   ++ ++  +Q   +   L +R + L +  A
Sbjct:  663 LTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGSEFLVNQPEGEDTSAV-REQVMGMVRGHFRPEFLNRVDEIILFHRLQRSEMGRIVEIQFARLQKLLTDRKIVLTLDGA 799          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB1_THEEB (Chaperone protein clpB 1 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.438e-38
Identity = 73/138 (52.90%), Postives = 106/138 (76.81%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEA+RRRPY+VVLFDE+EKAH  VFN  LQ+LDDGR+TD QGRTVDF+NT+IIMTSN+G++++L             ++V++ +R HFRPE LNR+DE ++F  L  +QLR++ +LQ++ +  RL++R + L++T+
Sbjct:  666 QLTEAIRRRPYAVVLFDEIEKAHPDVFNVFLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYILDVAGDDSRYSEMYNRVMEAMRAHFRPEFLNRVDEFIIFHSLRKDQLRQIVQLQVQRLQQRLSDRHITLSLTE 803          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_BRUSU (Chaperone protein clpB OS=Brucella suis GN=clpB PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.878e-38
Identity = 81/137 (59.12%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRRRPY V+LFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAE+L++ +     ++  RD V+  VR  FRPE LNR+DEI++F  L  E +  +  +QM+ +   L++R + L + D
Sbjct:  662 LTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEYLVN-LGENDDVETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLED 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.453e-38
Identity = 82/139 (58.99%), Postives = 102/139 (73.38%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL--LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTE VRRRPYS++L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG+  +  LSG          +  V+  V+ HFRPE +NRLD+IVVF PL   Q++++AR+Q++ +  RLAE  + L + D
Sbjct:  662 LTELVRRRPYSLILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSHQIQELSGDDSPEVYTQMKAAVMGVVQAHFRPEFINRLDDIVVFHPLDKAQIKQIARIQLRGLEKRLAESELKLDLDD 800          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_COXBU (Chaperone protein clpB OS=Coxiella burnetii GN=clpB PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 2.453e-38
Identity = 80/137 (58.39%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEA+RRRPYSV+L DE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVI+MTSNLG++ L+    G+      +D V++ V +HFRPE +NR+DE VVF  L  EQ+R +A +Q+  +  RL E+   L ++D
Sbjct:  664 LTEAIRRRPYSVILLDEIEKAHNDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIVMTSNLGSD-LIREFSGE-NYDKMKDAVMEVVAQHFRPEFINRIDEAVVFHSLKKEQIRNIAIIQIDRIKKRLKEKDYQLTISD 798          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_CORDI8.431e-3958.27Chaperone protein clpB OS=Corynebacterium diphther... [more]
CLPB_BACAN8.431e-3955.00Chaperone protein clpB OS=Bacillus anthracis GN=cl... [more]
CLPB_XYLFA1.101e-3858.99Chaperone protein clpB OS=Xylella fastidiosa GN=cl... [more]
CLPB_SHEON1.101e-3859.85Chaperone protein clpB OS=Shewanella oneidensis GN... [more]
CLPB_PHOPR1.438e-3857.97Chaperone protein clpB OS=Photobacterium profundum... [more]
CLPB_BRAJA1.438e-3859.42Chaperone protein clpB OS=Bradyrhizobium japonicum... [more]
CLPB1_THEEB1.438e-3852.90Chaperone protein clpB 1 OS=Thermosynechococcus el... [more]
CLPB_BRUSU1.878e-3859.12Chaperone protein clpB OS=Brucella suis GN=clpB PE... [more]
CLPB_XYLFT2.453e-3858.99Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]
CLPB_COXBU2.453e-3858.39Chaperone protein clpB OS=Coxiella burnetii GN=clp... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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