FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_BACTN (Chaperone protein clpB OS=Bacteroides thetaiotaomicron GN=clpB PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 3.204e-38
Identity = 78/145 (53.79%), Postives = 108/145 (74.48%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEA+RR+PYSVVLFDE+EKAH  VFN LLQVLDDGRLTD +GR V+F+NT+IIMTSN+G+ ++      LSG   +  ++  + +V+  ++K+ RPE LNR+DE ++F PL+  ++R++  LQ+K V   LAE GV L +TDA
Sbjct:  659 QLTEAIRRKPYSVVLFDEIEKAHPDVFNILLQVLDDGRLTDNKGRVVNFKNTIIIMTSNMGSSYIQSQMEKLSGSNKEEVIEETKKEVMNMLKKNIRPEFLNRIDETIMFLPLTETEIRQIVLLQIKGVQKMLAENGVELEMTDA 803          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 4.184e-38
Identity = 80/136 (58.82%), Postives = 99/136 (72.79%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG++ ++    G +     +D V+  V  +FRPE +NR+DE VVF PL    L  +A +Q++ +  RL ERG  + +T
Sbjct:  662 LTEAVRRRPYSVILLDEVEKAHSDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSD-MIQERFGSLNYDEMKDIVMGIVSHNFRPEFINRIDEAVVFHPLGRRHLSAIADIQLQRLYKRLEERGYQVTIT 796          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 5.465e-38
Identity = 75/139 (53.96%), Postives = 101/139 (72.66%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QL+EAVRR PYSVVL DEVEKAH  VFN LLQVLDDGR+TD QGRTVDFRNTVI+MTSN+G+EH+L         +  R++V+  +R HFRPE LNR+D+ ++F  LS  ++  + R+Q+K V   L ++ ++  ++ A
Sbjct:  670 QLSEAVRRHPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRNTVIVMTSNIGSEHILDVSGDDTQYETMRNRVMDALRSHFRPEFLNRVDDTILFHALSRSEMSHIIRIQLKRVESLLRDQKISFEISPA 808          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_BRUME (Chaperone protein clpB OS=Brucella melitensis GN=clpB PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.138e-38
Identity = 80/137 (58.39%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRRRPY V+LFDE+EKAH  VFN LLQVLDDGRLTDGQG TVDFRNTVIIMTSNLGAE+L++ +     ++  RD V+  VR  FRPE LNR+DEI++F  L  E +  +  +QM+ +   L++R + L + D
Sbjct:  662 LTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGHTVDFRNTVIIMTSNLGAEYLVN-LGENDDVETVRDDVMGVVRASFRPEFLNRVDEIILFHRLRREDMGAIVDIQMQRLQYLLSDRKITLQLED 797          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_AGRT5 (Chaperone protein clpB OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=clpB PE=3 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 7.138e-38
Identity = 77/137 (56.20%), Postives = 102/137 (74.45%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRRRPY VVLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDF+NT+IIMTSNLG+E  ++ M     +   R+ V++ VR HFRPE LNR+D+I++F  L  +++  +  +Q+K +   LA+R + L + +
Sbjct:  664 LTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTIIIMTSNLGSE-FMTQMGDNDDVDSVRELVMERVRSHFRPEFLNRIDDIILFHRLRRDEMGAIVEIQLKRLVSLLADRKITLELDE 799          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLP_TRYBB (Heat shock protein 100 OS=Trypanosoma brucei brucei GN=HSP100 PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.322e-38
Identity = 82/138 (59.42%), Postives = 101/138 (73.19%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE VRRRP++VVLFDEVEKAH +V+N LLQVLDDGRLTD +GRTVDF NT+I+MTSNLG+EHLL+      + +V R+ VL  VR +FRPEL+NRLD+IVVF  L  E LR V    +  V  RL   G ++ + D
Sbjct:  659 QLTEPVRRRPHAVVLFDEVEKAHPNVYNVLLQVLDDGRLTDSRGRTVDFSNTIIVMTSNLGSEHLLNPEETNESYEVLRENVLAAVRSYFRPELINRLDDIVVFRRLRTEDLRGVVDNLIAGVNERLKSSGFSVLLDD 796          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_RHOPA (Chaperone protein clpB OS=Rhodopseudomonas palustris GN=clpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.322e-38
Identity = 79/133 (59.40%), Postives = 101/133 (75.94%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVAL 403
            LTEAVRRRPY V+LFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNT+I+MTSNLG+E+L++   G+ T  V R+QV+  VR HFRPE LNR+DEI++F  L   ++ ++  +Q   +   L +R + L
Sbjct:  663 LTEAVRRRPYQVILFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIVMTSNLGSEYLVNQPEGEDTGAV-REQVMGMVRAHFRPEFLNRVDEIILFHRLQKSEMGRIVDIQFARLTKLLEDRKIVL 794          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.322e-38
Identity = 82/138 (59.42%), Postives = 100/138 (72.46%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            LTEAVRRRPYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTV+IMTSNLG+ HL+      +     ++ V+  V +HFRPE +NR+DE VVF PL  E +R++A +Q+  +  R+   G  L  TDA
Sbjct:  661 LTEAVRRRPYSVILLDEVEKAHHDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGS-HLIQ-ENSTLDYPSMKELVMSVVGQHFRPEFINRIDETVVFHPLGKENIREIATIQLARLIKRMESHGYQLHFTDA 796          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.322e-38
Identity = 75/139 (53.96%), Postives = 105/139 (75.54%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPY+VVLFDE+EKAH  VFN LLQVLDDGR+TD QGRT+DF+N VIIMTSN+G++ +L         +  R++V++ ++ HFRPE LNR+D+I++F  L  +QL  + +LQ+  +  RLA+R + L +++A
Sbjct:  668 QLTEAVRRRPYAVVLFDEIEKAHNDVFNVLLQVLDDGRITDSQGRTIDFKNAVIIMTSNIGSDAILRLGGNDAYYEQMREEVMRAMQVHFRPEFLNRVDDIIIFRNLRRDQLAAIVKLQIARLEKRLADRKITLKLSEA 806          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.322e-38
Identity = 79/138 (57.25%), Postives = 104/138 (75.36%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRRRPYS+VLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLG++ +     G       +  V + +++ F+PE LNR+DEIV++  L  EQ++K+  +Q++ +  RLA+R + L ++D
Sbjct:  667 QLTEAVRRRPYSIVLFDEIEKAHPEVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQWI--QQYGSSDYARMKAMVTETLKEGFKPEFLNRIDEIVIYHALPLEQIKKIVDIQVECLKQRLADRRIVLELSD 802          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_BACTN3.204e-3853.79Chaperone protein clpB OS=Bacteroides thetaiotaomi... [more]
CLPB_PHOLL4.184e-3858.82Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB1_ANASP5.465e-3853.96Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB_BRUME7.138e-3858.39Chaperone protein clpB OS=Brucella melitensis GN=c... [more]
CLPB_AGRT57.138e-3856.20Chaperone protein clpB OS=Agrobacterium tumefacien... [more]
CLP_TRYBB9.322e-3859.42Heat shock protein 100 OS=Trypanosoma brucei bruce... [more]
CLPB_RHOPA9.322e-3859.40Chaperone protein clpB OS=Rhodopseudomonas palustr... [more]
CLPB_PASMU9.322e-3859.42Chaperone protein clpB OS=Pasteurella multocida GN... [more]
CLPB_GLOVI9.322e-3853.96Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_GEOSL9.322e-3857.25Chaperone protein clpB OS=Geobacter sulfurreducens... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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