FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CHRVO (Chaperone protein clpB OS=Chromobacterium violaceum GN=clpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.322e-38
Identity = 77/137 (56.20%), Postives = 104/137 (75.91%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTE VRR+PYSV+L DEVEKAH  VFN LLQVLDDGRLTDGQGRTVDF+NTVI+MTSN+G++ + +  M     QV +  V+ EV+  FRPE +NR+DE+VVF  L  + ++ +AR+Q+K +  RLA+  ++L ++D
Sbjct:  666 LTEQVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTVIVMTSNIGSQQIQA--MATDDYQVIKLAVMAEVKTQFRPEFINRIDEVVVFHGLDEKHIQSIARIQLKSLENRLAKLELSLQISD 800          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_BIFLO (Chaperone protein clpB OS=Bifidobacterium longum GN=clpB PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.322e-38
Identity = 80/139 (57.55%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPYSVVLFDEVEKA+  +F+ LLQVLDDGRLTDGQGRTVDF+NT++IMTSNLG++ L++  M        +  V+  V  +F+PE LNRLD+IV+F PL+ E+L  +  +Q+  V  RL +R + L VTD+
Sbjct:  672 QLTEAVRRRPYSVVLFDEVEKANPEIFDVLLQVLDDGRLTDGQGRTVDFKNTILIMTSNLGSQFLVNEDM---DADAKKKAVMDAVHMNFKPEFLNRLDDIVMFHPLTREELGGIVDIQVAGVSQRLTDRRITLDVTDS 807          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_RHILO (Chaperone protein clpB OS=Rhizobium loti GN=clpB PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.590e-37
Identity = 78/135 (57.78%), Postives = 101/135 (74.81%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAV 409
            LTEAVRRRPY VVLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDFRNT+IIMTSNLGAE+L++ +     +   RD+V+  VR  FRPE LNR+DE+++F  L  + + ++  +Q K +   L +R + L++
Sbjct:  662 LTEAVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTLIIMTSNLGAEYLVN-LGEDQDVDAVRDEVMGVVRASFRPEFLNRVDEVILFHRLRRKDMDRIVEIQFKRLESLLVDRKITLSL 795          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNY3 (Chaperone protein clpB 2 OS=Synechocystis sp. (strain PCC 6803) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.077e-37
Identity = 72/138 (52.17%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEA+RRRPYSV+LFDE+EKAH  VFN +LQ+LDDGRLTD QG  VDF+NT+IIMTSNLG++++L         +  R +V+  +R++FRPE LNR+DE ++F  L   +LR + ++Q++ +  RL E+ + L +TD
Sbjct:  667 QLTEAIRRRPYSVILFDEIEKAHGDVFNVMLQILDDGRLTDAQGHVVDFKNTIIIMTSNLGSQYILDVAGDDSRYEEMRSRVMDVMRENFRPEFLNRVDETIIFHGLQKSELRSIVQIQIQSLATRLEEQKLTLKLTD 804          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNE7 (Chaperone protein clpB 2 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.077e-37
Identity = 75/139 (53.96%), Postives = 104/139 (74.82%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QL+EA+RR PY+VVLFDEVEKAH  VFN LLQVLDDGR+TD QGRT+DF N VI+MTSN+G++ +L     + ++     +VL  +R+HFRPE LNR+D+ ++F PLS  QL+++  +Q++ +   LAE+ +AL VT A
Sbjct:  673 QLSEAIRRHPYAVVLFDEVEKAHPDVFNLLLQVLDDGRITDSQGRTIDFCNAVIVMTSNIGSQFILEMGEEEASLDAVELKVLGALRQHFRPEFLNRIDDTILFQPLSRGQLQQIVDIQLQRLKRLLAEQAIALNVTPA 811          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_TREPA (Chaperone protein clpB OS=Treponema pallidum GN=clpB PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.542e-37
Identity = 81/152 (53.29%), Postives = 103/152 (67.76%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKV--------TMQVARDQVLQE-----VRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPYSV+LFDEVEKAH  VFN  LQ+LDDGRLTDGQGR VDFRNT+IIMTSN+G+EH+LS    +           Q   +Q L E     +  +FRPE LNR+DE+++F  L+ + +R +  +Q++ V  RL  R + L V DA
Sbjct:  665 QLTEAVRRRPYSVLLFDEVEKAHQDVFNIFLQILDDGRLTDGQGRVVDFRNTIIIMTSNIGSEHILSARESRTHTSDLPVPETQSTEEQTLPEQIRGLLHTYFRPEFLNRIDEVLIFKRLTRKHIRLITDIQLQMVVERLESRHIKLRVRDA 816          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_RHIME (Chaperone protein clpB OS=Rhizobium meliloti GN=clpB PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 4.626e-37
Identity = 78/137 (56.93%), Postives = 101/137 (73.72%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTE+VRRRPY VVLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDF+NT+IIMTSNLGAE+ L+ +         RDQV++ VR  FRPE LNR+DEI++F  L   ++  +  +Q++ +   L++R + L + D
Sbjct:  664 LTESVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTMIIMTSNLGAEY-LTALGENEDSDAVRDQVMEVVRAAFRPEFLNRVDEIILFHRLRRSEMGAIVDIQLERLRKLLSDRKITLELED 799          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_NITEU (Chaperone protein clpB OS=Nitrosomonas europaea GN=clpB PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 77/137 (56.20%), Postives = 104/137 (75.91%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTE VRR+PYSV+L DEVEKAH  VFN LLQVLDDGR+TDGQGRTVDF+NTVI+MTSNLG++ ++  M G    QV +  V+ EV+ +FRPE +NR+DE+VVF  L    ++ +AR+Q+ ++  RLA+  + L V++
Sbjct:  667 LTEQVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSQ-MIQQMSGD-DYQVIKLAVMGEVKTYFRPEFINRIDEVVVFHALGEAHIKSIARIQLSNLGKRLAQMEMKLVVSE 801          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CORGL (Chaperone protein clpB OS=Corynebacterium glutamicum GN=clpB PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 6.042e-37
Identity = 80/139 (57.55%), Postives = 102/139 (73.38%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPY+VVLFDEVEKAH  VF+ LLQVLD+GRLTDGQGRTVDFRNT++I+TSNLGA                R+Q++  V+  F+PE +NRLD++V+FD LS EQL  +  +Q+K +  RLA R + L V+D+
Sbjct:  664 QLTEAVRRRPYTVVLFDEVEKAHPDVFDILLQVLDEGRLTDGQGRTVDFRNTILILTSNLGAGG-------------TREQMMDAVKMAFKPEFVNRLDDVVIFDRLSPEQLTSIVDIQIKQLTDRLAGRRLNLRVSDS 789          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 7.892e-37
Identity = 69/138 (50.00%), Postives = 103/138 (74.64%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE +RRRPY+V+LFDE+EKAH  VFN  LQ+LDDGR+TD QG TVDF+NT+IIMTSN+G++++L            R +V++ +R  FRPE LNR+DE+++F  L  ++LR++ +LQ++ +  RL +R ++L ++D
Sbjct:  667 QLTETIRRRPYAVILFDEIEKAHPDVFNIFLQILDDGRVTDAQGHTVDFKNTIIIMTSNIGSQYILDIAGDNSRYDEMRHRVMEAMRNSFRPEFLNRIDEVIIFHSLDKKELRQIVQLQVERLKARLDDRKISLRLSD 804          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_CHRVO9.322e-3856.20Chaperone protein clpB OS=Chromobacterium violaceu... [more]
CLPB_BIFLO9.322e-3857.55Chaperone protein clpB OS=Bifidobacterium longum G... [more]
CLPB_RHILO1.590e-3757.78Chaperone protein clpB OS=Rhizobium loti GN=clpB P... [more]
CLPB2_SYNY32.077e-3752.17Chaperone protein clpB 2 OS=Synechocystis sp. (str... [more]
CLPB2_SYNE72.077e-3753.96Chaperone protein clpB 2 OS=Synechococcus elongatu... [more]
CLPB_TREPA3.542e-3753.29Chaperone protein clpB OS=Treponema pallidum GN=cl... [more]
CLPB_RHIME4.626e-3756.93Chaperone protein clpB OS=Rhizobium meliloti GN=cl... [more]
CLPB_NITEU6.042e-3756.20Chaperone protein clpB OS=Nitrosomonas europaea GN... [more]
CLPB_CORGL6.042e-3757.55Chaperone protein clpB OS=Corynebacterium glutamic... [more]
CLPB2_ANASP7.892e-3750.00Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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