FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_PSEAE (Chaperone protein clpB OS=Pseudomonas aeruginosa GN=clpB PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.031e-36
Identity = 78/138 (56.52%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL--LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTEA+RR+PYSVVL DEVEKAH  VFN LLQVL+DGRLTD  GRTVDFRNTV++MTSNLG+  +  L+G       +  R  V+  V  HFRPE +NR+DE+VVF+PL+ EQ+  +A +Q+  +  RLAER ++L ++
Sbjct:  662 LTEAIRRKPYSVVLLDEVEKAHPDVFNILLQVLEDGRLTDSHGRTVDFRNTVVVMTSNLGSAQIQELAG-----DREAQRAAVMDAVNAHFRPEFINRIDEVVVFEPLAREQIAGIAEIQLGRLRKRLAERELSLELS 794          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_LACPL (Chaperone protein clpB OS=Lactobacillus plantarum GN=clpB PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 76/139 (54.68%), Postives = 102/139 (73.38%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQV-ARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR PYS+VLFDE+EKAH  VFN LLQVLDDGRLTDGQGRTVDF+NT++IMTSNLG+E LL+G+  +  +      QV+Q V+  F+PE LNR+D+I++F PL    + ++    +  +  RL +R + L ++D
Sbjct:  663 QLTEAVRRNPYSIVLFDEIEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTILIMTSNLGSELLLAGVDDQGHLSADTHQQVMQLVQSRFKPEFLNRIDDIIMFTPLQLGAIEEIVVKLIDRLSARLQDREITLKISD 801          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 151.369 bits (381), Expect = 1.346e-36
Identity = 69/137 (50.36%), Postives = 106/137 (77.37%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            QLTEAVRRRPYSV+LFDE+EKAH  VFN +LQ+LDDGR+TD +GRTVDF+NT++I+TSN+G++++L         +  R +V + +R +FRPE LNR+DE ++F  L  +QL+++ R+Q+  +  RL++R ++L+++
Sbjct:  667 QLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSRGRTVDFKNTILILTSNIGSQYILDVAGDDSRYEEMRSRVTEALRANFRPEFLNRVDETIIFHSLRKDQLQQIVRIQLHRLEERLSDRKLSLSMS 803          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CLOTE (Chaperone protein clpB OS=Clostridium tetani GN=clpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 69/138 (50.00%), Postives = 102/138 (73.91%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR+PYSV+LFDE+EKAH  VFN  LQ+LDDGRLTD +G+TVDF+N +IIMTSN+G+ +LL         +  +++V   ++  F+PE LNRLD+I++F PL++ ++ K+  + ++D+  RL +R + L VT+
Sbjct:  667 QLTEAVRRKPYSVILFDEIEKAHDDVFNIFLQILDDGRLTDNKGKTVDFKNCIIIMTSNIGSSYLLENKKEDGIDETVKNKVSNALKDRFKPEFLNRLDDIIMFKPLTNREITKIIDIFLQDIENRLKDRNITLIVTE 804          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_CLOAB (Chaperone protein clpB OS=Clostridium acetobutylicum GN=clpB PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 1.758e-36
Identity = 67/138 (48.55%), Postives = 103/138 (74.64%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRR+PYSV+LFDE+EKAH  VFN  LQ+ DDGRLTD +G T+DF+N++IIMTSN+G+EHLL+        +  +D+V+ E++  F+PE LNRLD+I++F PLS  ++ K+  + ++++  +L E+ + + + +
Sbjct:  667 QLTEAVRRKPYSVILFDEIEKAHSDVFNIFLQIFDDGRLTDNKGNTIDFKNSIIIMTSNIGSEHLLNNKGVSNVDEETKDKVMNELKGRFKPEFLNRLDDIIMFKPLSINEIGKIIDIFLENIKSKLKEKNIKIDIAE 804          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 74/138 (53.62%), Postives = 99/138 (71.74%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVRRRPY+V+LFDEVEKAH  VFN +LQ+LDDGR+TDGQGRTVDF NTV+I+TSN+G++ +L         +    +V   +  HFRPE LNRLDE ++F  L  E+LR++  LQ+  +  RL +R + L ++D
Sbjct:  667 QLTEAVRRRPYAVILFDEVEKAHQDVFNVMLQILDDGRVTDGQGRTVDFTNTVLILTSNIGSQSILDLGGDDSQYREMERRVHDALHAHFRPEFLNRLDETIIFHSLRREELRQIVALQVNRLRERLCDRKLGLEISD 804          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 2.296e-36
Identity = 76/137 (55.47%), Postives = 105/137 (76.64%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            LTEAVRR+PYSVVLFDEVEKAH  VFNTLLQVLD+GRLTDGQGRTVDFR+TVIIMTSNLG++  +  ++ + + +  +  V++ V  HFRPE +NR+DE +VF  L+   + ++A++Q++ +  RL  R + L+V +
Sbjct:  667 LTEAVRRKPYSVVLFDEVEKAHSDVFNTLLQVLDEGRLTDGQGRTVDFRHTVIIMTSNLGSD--MIQLLAEKSYEEMKSAVMEIVMAHFRPEFINRIDEAIVFHGLAKTHMYRIAQIQLERLRQRLQTRELLLSVEE 801          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_STAAW (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MW2) GN=clpC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 75/145 (51.72%), Postives = 102/145 (70.34%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+L+++  + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_STAAS (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MSSA476) GN=clpC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 75/145 (51.72%), Postives = 102/145 (70.34%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+L+++  + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_STAAR (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus aureus (strain MRSA252) GN=clpC PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.115e-36
Identity = 75/145 (51.72%), Postives = 102/145 (70.34%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNT+IIMTSN+GA+ L         G       +  R  +L+E++  FRPE LNR+D+I+VF  L+ E+L+++  + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTIIIMTSNVGAQELQDQRFAGFGGSSDGQDYETIRKTMLKELKNSFRPEFLNRVDDIIVFHKLTKEELKEIVTMMVNKLTNRLSEQNINIIVTD 745          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_PSEAE1.031e-3656.52Chaperone protein clpB OS=Pseudomonas aeruginosa G... [more]
CLPB_LACPL1.346e-3654.68Chaperone protein clpB OS=Lactobacillus plantarum ... [more]
CLPB1_SYNE71.346e-3650.36Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPB_CLOTE1.758e-3650.00Chaperone protein clpB OS=Clostridium tetani GN=cl... [more]
CLPB_CLOAB1.758e-3648.55Chaperone protein clpB OS=Clostridium acetobutylic... [more]
CLPB_PROMM2.296e-3653.62Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_DICNO2.296e-3655.47Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]
CLPC_STAAW5.115e-3651.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAS5.115e-3651.72ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAAR5.115e-3651.72ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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