FC920862

Overview
NameFC920862
Unique NameFC920862
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length419
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_BLOFL (Chaperone protein clpB OS=Blochmannia floridanus GN=clpB PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.681e-36
Identity = 77/130 (59.23%), Postives = 95/130 (73.08%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERG 394
            LTE++RRRPYS+VL DE+EKAH+ VFN LLQVLDDGRLTD QGR VDF NTVIIMTSNLG++ L+            +  VL  V ++FRPE +NR+DEIVVF PLS + L  +A +Q+K +  RL ERG
Sbjct:  664 LTESIRRRPYSIVLLDEIEKAHLDVFNILLQVLDDGRLTDNQGRMVDFNNTVIIMTSNLGSD-LIQKKFDISDYDTMKKTVLNVVNQYFRPEFINRIDEIVVFHPLSIKHLIDIANIQLKYLYSRLEERG 792          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 8.725e-36
Identity = 74/148 (50.00%), Postives = 110/148 (74.32%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQ-----------VLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            QLTE+VRRRPY+VVLFDE+EK H  VFN LLQ+L+DGRLTD +GRTVDF+NT++I+TSN+G++ +  G  G +   ++ DQ           V +E++++FRPE LNRLDEI+VF  L+ +++ ++A + +K+V  R++E+G+ L VT
Sbjct:  602 QLTESVRRRPYTVVLFDEIEKGHPDVFNLLLQILEDGRLTDSKGRTVDFKNTLLILTSNVGSKVIEKG-GGGLGFDLSEDQTESQYGRIKALVNEELKQYFRPEFLNRLDEIIVFRQLTKDEVGEIAEIMLKEVFTRISEKGIQLEVT 748          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_STAES (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.140e-35
Identity = 74/145 (51.03%), Postives = 102/145 (70.34%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNTVIIMTSN+GA+ L         G       +  R  +++E++  FRPE LNR+D+I+VF  L+ ++L+++  + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQELQDQRFAGFGGASEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTD 745          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_STAEQ (ATP-dependent Clp protease ATP-binding subunit clpC OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpC PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.140e-35
Identity = 74/145 (51.03%), Postives = 102/145 (70.34%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL-------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTE VRR+PYSV+LFDE+EKAH  VFN LLQVLDDG LTD +GRTVDFRNTVIIMTSN+GA+ L         G       +  R  +++E++  FRPE LNR+D+I+VF  L+ ++L+++  + +  +  RL+E+ + + VTD
Sbjct:  601 QLTEKVRRKPYSVILFDEIEKAHPDVFNILLQVLDDGHLTDTKGRTVDFRNTVIIMTSNVGAQELQDQRFAGFGGASEGSDYETVRKTMMKELKNSFRPEFLNRVDDIIVFHKLTKDELKEIVTMMVNKLTHRLSEQNINIVVTD 745          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_PLEBO (Chaperone protein clpB OS=Plectonema boryanum GN=clpB PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 1.140e-35
Identity = 73/139 (52.52%), Postives = 103/139 (74.10%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPYSV+LFDE+EKAH  VFN +LQ+LDDGR+TD QGRTVDF+NT+IIMTSN+G++++          +    +V++ +  +FRPE LNR+DEI++F  L   QLR++ ++Q   +  RLA R ++L ++DA
Sbjct:  668 QLTEAVRRRPYSVILFDEIEKAHPDVFNVMLQILDDGRVTDSQGRTVDFKNTIIIMTSNIGSQYIFEYGGDDDRYEEILSRVMEAMLSNFRPEFLNRIDEIIIFHSLQKAQLREIVKIQTHRLESRLA-RKMSLKLSDA 805          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.140e-35
Identity = 75/144 (52.08%), Postives = 106/144 (73.61%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMG------KVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            +LTEAVRR+PYSV+L DE+EKAH  V +  LQVLDDGRLTD  GRTVDFRNTVIIMTSN+G+++LL+  +           + A+++VL+E++ + RPE +NR+DEI+VF PL+  +L K+  L + +V  RLAER + + +T+
Sbjct:  782 KLTEAVRRKPYSVILLDEIEKAHPRVLDLFLQVLDDGRLTDSHGRTVDFRNTVIIMTSNIGSQYLLNIPVDADEETLNREFEKAKEKVLEELKLYMRPEFINRIDEIIVFKPLTMRELSKIIDLLIANVNKRLAERNIKIELTE 925          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB2_SYNPX (Chaperone protein clpB 2 OS=Synechococcus sp. (strain WH8102) GN=clpB2 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.140e-35
Identity = 80/143 (55.94%), Postives = 100/143 (69.93%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGA----EHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVRRRPY+V+L DEVEKAH  VFN LLQVLDDGRLTD QG TVDFR+TV++MTSNL +    EH  SG      +Q    QV   +   FRPE LNR+DE++ F PL  + L ++ RLQ+ D+   +AE+G++L V DA
Sbjct:  697 QLTEAVRRRPYAVLLLDEVEKAHPDVFNLLLQVLDDGRLTDSQGLTVDFRHTVVVMTSNLASPVILEHARSGSSDDAQLQ---QQVDAALSSQFRPEFLNRIDEVIRFRPLKVKDLVRIVRLQLADLSTLMAEQGLSLEVDDA 836          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_STRMU (Chaperone protein clpB OS=Streptococcus mutans GN=clpB PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 1.488e-35
Identity = 74/141 (52.48%), Postives = 106/141 (75.18%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMM--GKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTDA 418
            QLTEAVR+R YS+VL DE+EKAH  VFNTLLQVLD+GRLTD +GRT+DF+NT++IMTSN+G+ ++L  +   G +T +V R +VL E+   FRPE LNR+DE V+F+ LS + +  V ++ + D+  RL E+ + L +T++
Sbjct:  659 QLTEAVRQRLYSIVLLDEIEKAHPDVFNTLLQVLDEGRLTDSKGRTIDFKNTILIMTSNIGSTNILQSLQDSGCITSEV-RYKVLDELNHSFRPEFLNRIDETVLFNALSEKDMTGVVKVMVSDLQARLLEQDIHLTLTES 798          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 70/148 (47.30%), Postives = 111/148 (75.00%), Query Frame = 2
Query:    2 QLTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHL----------LSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVTD 415
            QLTEAVR+RPY+VVLFDE+EKAH  VFN LLQ+L+DGRLTD +GRT+DF+NT++IMTSN+G++ +          L   + ++     R+ V +E++++FRPE LNR+DEI+VF  L+ +++R +A + ++++  R+ ++G++L VT+
Sbjct:  635 QLTEAVRKRPYTVVLFDEIEKAHPDVFNLLLQILEDGRLTDSKGRTIDFKNTLLIMTSNIGSKVIEKKGGGLGFELEENIEELQYSRMRNLVNEELKQYFRPEFLNRVDEIIVFRQLTKDEVRDIAHIMLREIFERVKQQGISLQVTE 782          
BLAST of FC920862 vs. ExPASy Swiss-Prot
Match: CLPB_PSESM (Chaperone protein clpB OS=Pseudomonas syringae pv. tomato GN=clpB PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.539e-35
Identity = 74/136 (54.41%), Postives = 100/136 (73.53%), Query Frame = 2
Query:    5 LTEAVRRRPYSVVLFDEVEKAHISVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGMMGKVTMQVARDQVLQEVRKHFRPELLNRLDEIVVFDPLSHEQLRKVARLQMKDVXIRLAERGVALAVT 412
            LTEAVRR+PYSV+L DEVEKAH  VFN LLQVL+DGRLTD  GRTVDFRNTVI+MTSNLG+   +  ++G    +  R  V+  V  HFRPE +NR+DE+V+F+PL+ +Q+  +  +Q+  +  RLAER + + ++
Sbjct:  662 LTEAVRRKPYSVILLDEVEKAHSDVFNILLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSAQ-IQELVG--DREAQRAAVMDAVSTHFRPEFVNRIDEVVIFEPLARDQIAGITDIQLGRLRKRLAERELTMVLS 794          
The following BLAST results are available for this feature:
BLAST of FC920862 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPB_BLOFL6.681e-3659.23Chaperone protein clpB OS=Blochmannia floridanus G... [more]
CLPC_GUITH8.725e-3650.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAES1.140e-3551.03ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_STAEQ1.140e-3551.03ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_PLEBO1.140e-3552.52Chaperone protein clpB OS=Plectonema boryanum GN=c... [more]
CLPB_AQUAE1.140e-3552.08Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]
CLPB2_SYNPX1.140e-3555.94Chaperone protein clpB 2 OS=Synechococcus sp. (str... [more]
CLPB_STRMU1.488e-3552.48Chaperone protein clpB OS=Streptococcus mutans GN=... [more]
CLPC_CYACA2.539e-3547.30ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_PSESM2.539e-3554.41Chaperone protein clpB OS=Pseudomonas syringae pv.... [more]

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Properties
Property NameValue
Genbank descriptionC32013H11EF RVDevelop1 Citrus clementina cDNA clone C32013H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920862 ID=FC920862; Name=FC920862; organism=Citrus clementina; type=EST; length=419bp
ACAACTTACTGAGGCTGTGAGGAGAAGGCCTTATAGTGTTGTGTTGTTTG
ATGAAGTGGAAAAAGCTCACATTTCTGTGTTTAATACTCTACTTCAAGTT
TTGGATGATGGAAGATTAACTGATGGCCAAGGCCGTACAGTTGACTTTAG
AAACACAGTTATTATCATGACCTCAAACCTTGGAGCAGAGCACCTCTTAT
CGGGAATGATGGGCAAGGTCACAATGCAAGTTGCACGTGATCAAGTCCTG
CAAGAGGTGAGGAAGCACTTTAGGCCAGAGCTGTTGAACCGTCTTGATGA
GATTGTTGTGTTTGATCCTCTCTCACACGAACAACTAAGGAAGGTGGCAA
GGCTGCAAATGAAGGATGTTGNCATTCGTCTTGCTGAGAGGGGTGTAGCA
TTGGCAGTAACTGATGCTG
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