FC920863

Overview
NameFC920863
Unique NameFC920863
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.310e-29
Identity = 80/230 (34.78%), Postives = 116/230 (50.43%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFF-XXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            F  SL G+TPLAER+ + TEQ+A YTGPT+GGLLNAT GNATE+II+++AL    I VV+                   F GG+ +  ++Q +++  A VNS                 +  +      K+ + LSR SS +ML+ Y +YL FQL + R  +                   I       WL  +T  I++LS ++V  I+ A  S  + V+FIS+ILLP+
Sbjct:   98 FLFSLIGITPLAERLGYATEQLALYTGPTIGGLLNATFGNATEMIISLYALKNGMIRVVQQSLLGSILSNMLLVLGCAFFAGGLVHPSRDQVFNKASAVVNSGLLLMAVLGLMFPAVLHFTHSEVQY-GKSEVSLSRFSSCIMLVAYASYLFFQLKSQRSLYSPIGEQEEEVTEDEEEEKEITQGEAICWLFVLTIWISILSGYLVDAIQGASESLNMPVAFISVILLPI 326          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 75/239 (31.38%), Postives = 107/239 (44.77%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREF----------FXXXXXXXXXXXXXXXTPVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            F LS+ G+ PLAER+ F T+   +     VG LLN+  GNATELII+I AL   K+ VV+                   F GG+A  +  Q + +  A VNS                 Y  + +    K+ L LSR SS +ML+ Y +YL FQL  +R                             P I      +W+    A I++LS ++V  I+ A  +W I V+FIS++LLP+
Sbjct:   97 FPLSMLGIIPLAERLGFATD---WQISCEVGRLLNSAFGNATELIISIHALSRGKLHVVQQCLLGSILSNLLLVLGSAFFSGGLACGKTMQTFSKADAVVNSGLLLMAVMGLLIPAALHYTHSEAQF-GKSELALSRFSSCIMLVAYASYLYFQLSNNRRRNEANVYPCMPLIKRRIQDDVDGNDDEVPEISKREAISWIAIFIAWISMLSYYLVDAIDGASKAWNIPVAFISVVLLPV 331          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: VCX1_YEAST (Vacuolar calcium ion transporter OS=Saccharomyces cerevisiae GN=VCX1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.193e-18
Identity = 69/236 (29.24%), Postives = 109/236 (46.19%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFK----YAAASSDITAKATLQLSRASSIVMLIGYIAYLVFQLWTHREFFXXXXXXXXXXXXXXXT---PVIGFWSGFAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            F  +   + PLA  ++  TE++A   G T+GGLLNAT GNA ELI++I AL + ++ +V+                     GG    R +Q +++  A   S               F+    +      I  K  L+LSR +SIV+LI Y+ +L FQL +H   F                     +   S    L+G T II+  ++F+VGTI++   S G+S +FI +I++P+
Sbjct:   64 FLFNFLAIIPLAAILANATEELADKAGNTIGGLLNATFGNAVELIVSIIALKKGQVRIVQASMLGSLLSNLLLVLGLCFIFGGYN--RVQQTFNQTAAQTMSSLLAIACASLLIPAAFRATLPHGKEDHFIDGK-ILELSRGTSIVILIVYVLFLYFQLGSHHALFEQQEEETDEVMSTISRNPHHSLSVKSSLVILLGTTVIISFCADFLVGTIDNVVESTGLSKTFIGLIVIPI 296          
BLAST of FC920863 vs. ExPASy Swiss-Prot
Match: YFKE_BACSU (Putative cation exchanger yfkE OS=Bacillus subtilis GN=yfkE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.085e-13
Identity = 65/233 (27.90%), Postives = 96/233 (41.20%), Query Frame = 1
Query:    1 FALSLPGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNATELIIAIFALYERKIDVVKYXXXXXXXXXXXXXXXXXXFCGGIANLRKEQKYDRKQADVNSXXXXXXXXXXXXXXXFKYAAASSDITAKAT-LQLSRASSIVMLIGYIAYLVFQLWTHREFFXXXXXXXXXXXXXXXTPVIGFWSG---FAWLVGMTAIIALLSEFVVGTIEDAXNSWGISVSFISIILLPL 687
            FA+    +  LA  +   TE ++   GP +GGLLNAT GNA ELII++FAL E    +V                    F GG+       KY R++ +++                F      S     A+ L LS   SI+M++ Y+A L F+L THR  +                     WSG      L   T ++A +SE +V T       +G S  FI +I++ +
Sbjct:   30 FAVYCVTIIALASYMGRATESLSIIAGPRIGGLLNATFGNAVELIISLFALKEGLTGIVLASLTGSVLGNLLLVAGLSFFVGGL-------KYKRQEFNIHDARHNSGLLIFAIIVAFVIPEVFSVGMGNASKLNLSIGISIIMILLYVAALYFKLVTHRGVYQPNNAAQTEEEEEPE------WSGKVATIVLFAATIVVAYISENLVHTFHSVAEQFGWSELFIGVIIVAI 249          
The following BLAST results are available for this feature:
BLAST of FC920863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CAX2_ORYSJ5.310e-2934.78Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX4_ORYSJ4.075e-2131.38Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]
VCX1_YEAST7.193e-1829.24Vacuolar calcium ion transporter OS=Saccharomyces ... [more]
YFKE_BACSU4.085e-1327.90Putative cation exchanger yfkE OS=Bacillus subtili... [more]

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Properties
Property NameValue
Genbank descriptionC32013H12EF RVDevelop1 Citrus clementina cDNA clone C32013H12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920863 ID=FC920863; Name=FC920863; organism=Citrus clementina; type=EST; length=704bp
TTCGCTCTGAGCTTACCAGGACTGACTCCTCTGGCTGAACGTGTCAGCTT
CTTGACAGAGCAAATTGCTTTCTACACTGGCCCAACAGTGGGGGGATTAT
TGAACGCGACATGCGGCAATGCCACGGAGCTCATCATAGCAATTTTTGCC
CTATACGAACGTAAAATTGACGTGGTCAAATATTCTCTTTTGGGTTCCAT
TCTCTCAAACCTTCTTCTGGTTCTTGGCACTTCGCTCTTCTGTGGAGGGA
TTGCCAATCTCAGAAAGGAACAAAAATACGATAGAAAACAAGCCGATGTC
AACTCGCTGCTGCTGCTGCTGGCATTGCTGTGCCACATGTTACCATTGCT
ATTCAAATACGCTGCGGCCTCCTCTGATATTACTGCCAAGGCGACCCTTC
AGCTATCAAGAGCCAGCAGCATTGTAATGCTGATTGGTTACATCGCCTAT
CTCGTCTTCCAATTGTGGACACACCGGGAATTTTTTGAAGCTCAAGAGGA
TTCAGAGGACGACGATGATGTGACTGAAGAAACGCCTGTGATTGGGTTTT
GGAGTGGATTTGCTTGGCTTGTTGGGATGACTGCTATCATTGCTTTACTA
TCAGAATTTGTAGTGGGCACAATTGAGGATGCTTNCAATTCTTGGGGGAT
TTCTGTGAGCTTTATCAGCATTATCTTGCTACCATTGNTGGAATGCAGCT
GACA
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