FC920866

Overview
NameFC920866
Unique NameFC920866
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length634
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB_COPC7 (Tubulin beta chain OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=CC1G_04743 PE=3 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.523e-90
Identity = 159/204 (77.94%), Postives = 175/204 (85.78%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDRMM T+SV PSPKVSDTVVEPYNATLSVHQLVEN+DE   +DNEALYDICFRTLKL+TPT+GDLNHL+S  MSG+T CLRFPGQLNSDLRKLAVN++PFPRLHFFM GFAPLT+RGS QYRA+TVPELTQQM+DAKNMM A++PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQITHSLGGGTGAGMGTLLISKIREEYPDRMMCTYSVVPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLSTPTYGDLNHLVSIVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMTGFAPLTARGSAQYRAVTVPELTQQMFDAKNMMAASDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB3_RAT (Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.523e-90
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE ENCDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLS+HQLVEN DE   +DNEALYDICFRTLKLATPT+GDLNHL+SATMSGVT  LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB3_MOUSE (Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.523e-90
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE ENCDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLS+HQLVEN DE   +DNEALYDICFRTLKLATPT+GDLNHL+SATMSGVT  LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB3_MACFA (Tubulin beta-3 chain OS=Macaca fascicularis GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.523e-90
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE ENCDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLS+HQLVEN DE   +DNEALYDICFRTLKLATPT+GDLNHL+SATMSGVT  LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB3_HUMAN (Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1 SV=2)

HSP 1 Score: 332.028 bits (850), Expect = 1.523e-90
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE ENCDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLS+HQLVEN DE   +DNEALYDICFRTLKLATPT+GDLNHL+SATMSGVT  LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB3_BOVIN (Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 SV=1)

HSP 1 Score: 332.028 bits (850), Expect = 1.523e-90
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE ENCDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLS+HQLVEN DE   +DNEALYDICFRTLKLATPT+GDLNHL+SATMSGVT  LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT+RGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTARGSQQYRALTVPELTQQMFDAKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB1_GADMO (Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1)

HSP 1 Score: 331.643 bits (849), Expect = 1.989e-90
Identity = 161/204 (78.92%), Postives = 175/204 (85.78%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKEAE+CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL TP++GDLNHL+SATMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLTSRGSQQYR+LTVPELTQQM+D KNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPSYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRSLTVPELTQQMFDGKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB4_CHICK (Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 2.598e-90
Identity = 161/204 (78.92%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKE ENCDCLQGFQ+ H              ISK+REEYPDR+M TFSV PSPKVSDTVVEPYNATLS+HQLVEN DE   +DNEALYDICFRTLKLATPT+GDLNHL+SATMSGVT  LRFPGQLN+DLRKLAVN++PFPRLHFFM GFAPLT RGSQQYRALTVPELTQQM+DAKNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKECENCDCLQGFQLTHSLGGGTGSGMGTLLISKVREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSIHQLVENTDETYCIDNEALYDICFRTLKLATPTYGDLNHLVSATMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTRRGSQQYRALTVPELTQQMFDAKNMMAACDPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB3_OOMCK (Tubulin beta-3 chain OS=Oomycete-like sp. (strain MacKay2000) GN=TUBB3 PE=3 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 3.393e-90
Identity = 162/204 (79.41%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAELID  LDVVR EAE+CDCLQGFQ+ H              I+K+REEYPDR+M+TFSV PSPKVSDTVVEPYNATLSVHQ+VEN DE  VLDNEALYDICFRTLKL TPT+GDLNHL+   MSGVT  LRFPGQLN DLRK+AVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQ +DAKNMMCAA+PR
Sbjct:  103 KGHYTEGAELIDSVLDVVRNEAESCDCLQGFQMTHSLGGGTGSGMGTLLIAKLREEYPDRVMMTFSVCPSPKVSDTVVEPYNATLSVHQIVENTDESFVLDNEALYDICFRTLKLTTPTYGDLNHLVCVCMSGVTSSLRFPGQLNCDLRKVAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQCFDAKNMMCAADPR 306
[Close]
BLAST of FC920866 vs. ExPASy Swiss-Prot
Match: TBB1_NOTCO (Tubulin beta-1 chain OS=Notothenia coriiceps neglecta GN=tubb1 PE=1 SV=1)

HSP 1 Score: 330.487 bits (846), Expect = 4.432e-90
Identity = 160/204 (78.43%), Postives = 174/204 (85.29%), Query Frame = 2 
Query:    2 KGHYTEGAELIDFPLDVVRKEAENCDCLQGFQVCHXXXXXXXXXXXXXXISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMMCAAEPR 613
            KGHYTEGAEL+D  LDVVRKEAE CDCLQGFQ+ H              ISKIREEYPDR+M TFSV PSPKVSDTVVEPYNATLSVHQLVEN DE   +DNEALYDICFRTLKL TPT+GDLNHL+SATMSGVT CLRFPGQLN+DLRKLAVN++PFPRLHFF+ GFAPLTSRG QQYR+LTVPELTQQM+D+KNMM A +PR
Sbjct:  103 KGHYTEGAELVDSVLDVVRKEAEGCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNATLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQLNADLRKLAVNMVPFPRLHFFIPGFAPLTSRGGQQYRSLTVPELTQQMFDSKNMMAACDPR 306
The following BLAST results are available for this feature:
BLAST of FC920866 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 419
Match NameE-valueIdentityDescription
TBB_COPC71.523e-9077.94Tubulin beta chain OS=Coprinopsis cinerea (strain ... [more]
TBB3_RAT1.523e-9078.92Tubulin beta-3 chain OS=Rattus norvegicus GN=Tubb3... [more]
TBB3_MOUSE1.523e-9078.92Tubulin beta-3 chain OS=Mus musculus GN=Tubb3 PE=1... [more]
TBB3_MACFA1.523e-9078.92Tubulin beta-3 chain OS=Macaca fascicularis GN=TUB... [more]
TBB3_HUMAN1.523e-9078.92Tubulin beta-3 chain OS=Homo sapiens GN=TUBB3 PE=1... [more]
TBB3_BOVIN1.523e-9078.92Tubulin beta-3 chain OS=Bos taurus GN=TUBB3 PE=2 S... [more]
TBB1_GADMO1.989e-9078.92Tubulin beta-1 chain OS=Gadus morhua PE=2 SV=1[more]
TBB4_CHICK2.598e-9078.92Tubulin beta-4 chain OS=Gallus gallus PE=1 SV=1[more]
TBB3_OOMCK3.393e-9079.41Tubulin beta-3 chain OS=Oomycete-like sp. (strain ... [more]
TBB1_NOTCO4.432e-9078.43Tubulin beta-1 chain OS=Notothenia coriiceps negle... [more]

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Properties
Property NameValue
Genbank descriptionC32014A06EF RVDevelop1 Citrus clementina cDNA clone C32014A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920866 ID=FC920866; Name=FC920866; organism=Citrus clementina; type=EST; length=634bp
CAAGGGTCATTACACCGAAGGCGCTGAGTTGATCGATTTTCCTCTGGATG
TTGTTAGAAAGGAAGCTGAGAATTGTGATTGCTTGCAGGGATTTCAAGTA
TGTCATTCTTTGGGAGGAGGTACTGGTTCTGGTATGGGAACCCTTCTTAT
TTCCAAGATCAGGGAGGAGTATCCAGATCGCATGATGTTGACATTTTCCG
TCTTCCCGTCTCCTAAGGTATCTGACACGGTTGTTGAGCCTTACAATGCT
ACCCTCTCAGTACATCAGCTTGTTGAGAATGCCGATGAATGTATGGTGCT
AGATAATGAAGCTCTATATGATATTTGCTTCAGAACTCTCAAGCTCGCCA
CCCCTACTTTTGGTGATCTTAACCATCTTATCTCTGCTACCATGAGTGGC
GTCACATGCTGTCTTCGATTCCCCGGACAGCTGAACTCTGACCTCAGGAA
GCTTGCTGTTAACCTTATCCCTTTCCCGCGTCTCCATTTCTTCATGGTTG
GGTTTGCACCCTTGACATCACGAGGATCACAGCAGTATCGTGCCCTTACT
GTGCCAGAACTAACCCAGCAGATGTGGGATGCTAAGAACATGATGTGTGC
TGCTGAACCACGCACGGTCGTTACCTAACTGCTT
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